View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16427_low_14 (Length: 355)
Name: NF16427_low_14
Description: NF16427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16427_low_14 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 18 - 355
Target Start/End: Original strand, 48403317 - 48403658
Alignment:
| Q |
18 |
agagagctctgcaattatcaattatgtcctcga-ttcaatgacatcaaagttgggtgacgaaaattgaaccact---cgctttgaatcaagctcaaaatc |
113 |
Q |
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| T |
48403317 |
agagagctctgcaattatcaattatgtcctcgaattcaatgacatcaaagttgggtgacgaaaattgaaccactactcgctttgaatcaagctcaaaatc |
48403416 |
T |
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| Q |
114 |
atcaagcctgagttgaaactcatggacccaatttaacgccgacaaaaggcctaaagcttctcctatgtgtatgtacaaatgctctcatttcatctctaat |
213 |
Q |
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| T |
48403417 |
atcaagcctgagttgaagctcatggacccaatttaacgccgacaaaaggcctaaagcttctcctatgtgtatgtacaaatgctctcatttcatctctaat |
48403516 |
T |
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| Q |
214 |
aaacatgtcaatgccaactctattatgctggttagagaaagctgcatttgtacctcccagcatattgcttgacccaatttgttgttcctgttcacggtgc |
313 |
Q |
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| T |
48403517 |
aaacatgtcaatgccaactctattatgctggttagagaaagctgcatttgtacctcccagcatattgcttgacccaatttgttgttcctgttcacggtgc |
48403616 |
T |
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| Q |
314 |
ttgctagctggtttgttgacttactttccgtcattctgtgct |
355 |
Q |
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| T |
48403617 |
ttgctagctggtttgttgacttactttccgtcattccgtgct |
48403658 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 127 - 182
Target Start/End: Original strand, 25537655 - 25537710
Alignment:
| Q |
127 |
tgaaactcatggacccaatttaacgccgacaaaaggcctaaagcttctcctatgtg |
182 |
Q |
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| T |
25537655 |
tgaagctcatggacccaatttaatgccgacaacagtcctaatgcttctccaatgtg |
25537710 |
T |
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