View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16427_low_15 (Length: 340)

Name: NF16427_low_15
Description: NF16427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16427_low_15
NF16427_low_15
[»] chr3 (2 HSPs)
chr3 (1-328)||(51120133-51120460)
chr3 (193-227)||(51112886-51112920)
[»] chr5 (4 HSPs)
chr5 (194-238)||(41886292-41886336)
chr5 (198-240)||(41900191-41900233)
chr5 (291-322)||(28660967-28660998)
chr5 (198-236)||(32268880-32268918)
[»] chr2 (1 HSPs)
chr2 (193-240)||(45244521-45244568)
[»] chr4 (7 HSPs)
chr4 (198-236)||(566754-566792)
chr4 (201-236)||(1524000-1524035)
chr4 (193-240)||(1537246-1537293)
chr4 (198-240)||(1488824-1488866)
chr4 (198-239)||(12120920-12120961)
chr4 (204-240)||(554097-554133)
chr4 (184-240)||(645445-645501)
[»] chr1 (1 HSPs)
chr1 (184-240)||(9582031-9582087)
[»] chr6 (3 HSPs)
chr6 (193-240)||(9412450-9412497)
chr6 (199-239)||(6403935-6403975)
chr6 (199-239)||(6433172-6433212)
[»] chr8 (1 HSPs)
chr8 (198-240)||(17642614-17642656)
[»] chr7 (1 HSPs)
chr7 (198-235)||(10616209-10616246)


Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 51120133 - 51120460
Alignment:
Q  1 tgattctgtctcacttttaatattgttcgtataagtttaacctaatcttaaacttgcaaaccctcacagatagcacaactgtcaccggcagcaaccacgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51120133 tgattctgtctcacttttaatattgttcgtataagtttaacctaatcttaaacttgcaaaccctcacagatagcacaactgtcaccggcagcaaccacgt 51120232  T
Q  101 caatatgaaaagaaagagaagtaactctctcaaatcttcccaacaacaattgttttcttcttccacaaaaacgacaacaattacagcagcatatttctat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  51120233 caatatgaaaagaaagagaagtaactctctcaaatcttcccaacaacaattgttttcttcttccacaaaaacgacaaccattacagcagcatatttctat 51120332  T
Q  201 ttacctgatgactgttgggaatgtgtcttcaaattcctcacctatatggcaacggtaacatcagcaacagctacttgaaacgtctatccgttgtctcgaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51120333 ttacctgatgactgttgggaatgtgtcttcaaattcctcacctatatggcaacggtaacatcagcaacagctacttgaaacgtctatccgttgtctcgaa 51120432  T
Q  301 gcagttcctctctatcaccaaccttctc 328  Q
    ||||||||||||||||||||||||||||    
T  51120433 gcagttcctctctatcaccaaccttctc 51120460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 227
Target Start/End: Original strand, 51112886 - 51112920
Alignment:
Q  193 atttctatttacctgatgactgttgggaatgtgtc 227  Q
    |||||||||||||||||||||||||||||| ||||    
T  51112886 atttctatttacctgatgactgttgggaatatgtc 51112920  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 41886292 - 41886336
Alignment:
Q  194 tttctatttacctgatgactgttgggaatgtgtcttcaaattcct 238  Q
    |||||||||||||||||| ||||||||||||||||||||||||||    
T  41886292 tttctatttacctgatgagtgttgggaatgtgtcttcaaattcct 41886336  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 41900191 - 41900233
Alignment:
Q  198 tatttacctgatgactgttgggaatgtgtcttcaaattcctca 240  Q
    |||||||| ||||| ||||||||||||||||||||||||||||    
T  41900191 tatttaccagatgagtgttgggaatgtgtcttcaaattcctca 41900233  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 291 - 322
Target Start/End: Original strand, 28660967 - 28660998
Alignment:
Q  291 ttgtctcgaagcagttcctctctatcaccaac 322  Q
    ||||||||||||||||||||||||||||||||    
T  28660967 ttgtctcgaagcagttcctctctatcaccaac 28660998  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 236
Target Start/End: Complemental strand, 32268918 - 32268880
Alignment:
Q  198 tatttacctgatgactgttgggaatgtgtcttcaaattc 236  Q
    |||||||| ||||| ||||||||||||||||||||||||    
T  32268918 tatttaccagatgagtgttgggaatgtgtcttcaaattc 32268880  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 193 - 240
Target Start/End: Original strand, 45244521 - 45244568
Alignment:
Q  193 atttctatttacctgatgactgttgggaatgtgtcttcaaattcctca 240  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  45244521 atttctatttacctgatgagtgttgggaatgtgtcttgaaattcctca 45244568  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 236
Target Start/End: Complemental strand, 566792 - 566754
Alignment:
Q  198 tatttacctgatgactgttgggaatgtgtcttcaaattc 236  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  566792 tatttacctgatgactgttgggaacgtgtcttcaaattc 566754  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 201 - 236
Target Start/End: Original strand, 1524000 - 1524035
Alignment:
Q  201 ttacctgatgactgttgggaatgtgtcttcaaattc 236  Q
    |||||||||||||||||||||| |||||||||||||    
T  1524000 ttacctgatgactgttgggaatctgtcttcaaattc 1524035  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 193 - 240
Target Start/End: Original strand, 1537246 - 1537293
Alignment:
Q  193 atttctatttacctgatgactgttgggaatgtgtcttcaaattcctca 240  Q
    |||| |||||||||||||| |||||||||||||| |||| ||||||||    
T  1537246 atttatatttacctgatgagtgttgggaatgtgtattcagattcctca 1537293  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 1488824 - 1488866
Alignment:
Q  198 tatttacctgatgactgttgggaatgtgtcttcaaattcctca 240  Q
    |||||||||||||| || |||||||||||| ||||||||||||    
T  1488824 tatttacctgatgagtgctgggaatgtgtcgtcaaattcctca 1488866  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 239
Target Start/End: Original strand, 12120920 - 12120961
Alignment:
Q  198 tatttacctgatgactgttgggaatgtgtcttcaaattcctc 239  Q
    |||||||||||||| ||||||||||||||| ||| |||||||    
T  12120920 tatttacctgatgagtgttgggaatgtgtcatcagattcctc 12120961  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 240
Target Start/End: Complemental strand, 554133 - 554097
Alignment:
Q  204 cctgatgactgttgggaatgtgtcttcaaattcctca 240  Q
    |||||||| |||||||||| |||||||||||||||||    
T  554133 cctgatgaatgttgggaatttgtcttcaaattcctca 554097  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 240
Target Start/End: Complemental strand, 645501 - 645445
Alignment:
Q  184 cagcagcatatttctatttacctgatgactgttgggaatgtgtcttcaaattcctca 240  Q
    |||| ||| |||| ||||||||| |||| ||||||| ||||||||||| ||||||||    
T  645501 cagctgcagatttttatttaccttatgattgttgggtatgtgtcttcagattcctca 645445  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 240
Target Start/End: Complemental strand, 9582087 - 9582031
Alignment:
Q  184 cagcagcatatttctatttacctgatgactgttgggaatgtgtcttcaaattcctca 240  Q
    ||||| || |||| ||||||||| |||||||||||||||  ||||||||||||||||    
T  9582087 cagcaacagatttttatttacctaatgactgttgggaatccgtcttcaaattcctca 9582031  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 193 - 240
Target Start/End: Complemental strand, 9412497 - 9412450
Alignment:
Q  193 atttctatttacctgatgactgttgggaatgtgtcttcaaattcctca 240  Q
    |||| |||||||||||||| ||||||||| || |||||||||||||||    
T  9412497 atttttatttacctgatgaatgttgggaaagtatcttcaaattcctca 9412450  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 6403975 - 6403935
Alignment:
Q  199 atttacctgatgactgttgggaatgtgtcttcaaattcctc 239  Q
    |||| ||||||||||| |||||||| |||||||||||||||    
T  6403975 atttgcctgatgactgatgggaatgcgtcttcaaattcctc 6403935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 6433212 - 6433172
Alignment:
Q  199 atttacctgatgactgttgggaatgtgtcttcaaattcctc 239  Q
    |||||||||||||||||||||||||  |||||| |||||||    
T  6433212 atttacctgatgactgttgggaatgcatcttcagattcctc 6433172  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 17642614 - 17642656
Alignment:
Q  198 tatttacctgatgactgttgggaatgtgtcttcaaattcctca 240  Q
    |||||||||||||| |||||||| | |||||||||||||||||    
T  17642614 tatttacctgatgagtgttgggagtctgtcttcaaattcctca 17642656  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 235
Target Start/End: Complemental strand, 10616246 - 10616209
Alignment:
Q  198 tatttacctgatgactgttgggaatgtgtcttcaaatt 235  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  10616246 tatttacctgatgagtgttgggaatgtatcttcaaatt 10616209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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