View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16427_low_17 (Length: 297)
Name: NF16427_low_17
Description: NF16427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16427_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 24232326 - 24232046
Alignment:
| Q |
1 |
tattgattgtgttttgttctttcataaggctctcggaaatgcttggaaggaagcatgtgcatcaacaactgcatcaaaaattgtgattccaggaggtaca |
100 |
Q |
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| T |
24232326 |
tattgattgtgttttgtcctttcataaggctcttggaaatgcttggaaggaagcatgtgcatcaacaactgcatcaaaaattgtgattccaggaggtaca |
24232227 |
T |
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| Q |
101 |
tacaagatgggtggaatagaacttaaaggtccttgtaaggcacctattgaagttcaagttgatggaacaattcaagcacctgcagacccttctcaaatca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
24232226 |
tacaagatgggtggaatagaacttaaaggtccttgtaaggcacctattgaagttcaagttgatggaacaattcaagcccctgcagacccttctcagatca |
24232127 |
T |
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| Q |
201 |
aagcggcggatcaatgggtcaaatttctatatattgaccatcttaccttatcaggaaaaggagtttttgatggtcaaggtg |
281 |
Q |
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| T |
24232126 |
aagcggcggatcaatgggttaaatttctatacatggaacatcttaccttatcaggaaaaggagtttttgatggtcaaggtg |
24232046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 2 - 281
Target Start/End: Complemental strand, 24244036 - 24243757
Alignment:
| Q |
2 |
attgattgtgttttgttctttcataaggctctcggaaatgcttggaaggaagcatgtgcatcaacaactgcatcaaaaattgtgattccaggaggtacat |
101 |
Q |
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| T |
24244036 |
attgattgtgttttttccgttcataaggctttgacagctgcttggaaggaagcatgtgcatcaacaactgcagcgaaaatagtgattccagctggtacat |
24243937 |
T |
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| Q |
102 |
acaagatgggtggaatagaacttaaaggtccttgtaaggcacctattgaagttcaagttgatggaacaattcaagcacctgcagacccttctcaaatcaa |
201 |
Q |
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| T |
24243936 |
accagttgaatggaattgaacttaaaggtccttgtaaggctcctattgaacttcaagttgatggaacaattcaagcacctgcagaccctagcgtaataaa |
24243837 |
T |
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| Q |
202 |
agcggcggatcaatgggtcaaatttctatatattgaccatcttaccttatcaggaaaaggagtttttgatggtcaaggtg |
281 |
Q |
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| T |
24243836 |
agggaccgaacaatggttcaagtttctatatatggaccatcttaccttatcaggcaaaggagtttttgatggtcaaggtg |
24243757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 2 - 281
Target Start/End: Original strand, 24298162 - 24298441
Alignment:
| Q |
2 |
attgattgtgttttgttctttcataaggctctcggaaatgcttggaaggaagcatgtgcatcaacaactgcatcaaaaattgtgattccaggaggtacat |
101 |
Q |
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| T |
24298162 |
attgattgtgttttttccgttcataaggctttgacagctgcttggaaggaagcatgtgcatcaacaactgcagcgaaaatagtgattccagctggtacat |
24298261 |
T |
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| Q |
102 |
acaagatgggtggaatagaacttaaaggtccttgtaaggcacctattgaagttcaagttgatggaacaattcaagcacctgcagacccttctcaaatcaa |
201 |
Q |
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| T |
24298262 |
accagttgaatggaattgaacttaaaggtccttgtaaggctcctattgaacttcaagttgatggaacaattcaagcacctgcagaccctagcgtaataaa |
24298361 |
T |
|
| Q |
202 |
agcggcggatcaatgggtcaaatttctatatattgaccatcttaccttatcaggaaaaggagtttttgatggtcaaggtg |
281 |
Q |
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|| | | || |||||| |||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
24298362 |
agggaccgaacaatggttcaagtttctatatatggaccatcttaccttatcaggcaaaggagtttttgatggtcaaggtg |
24298441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 177
Target Start/End: Original strand, 42843384 - 42843524
Alignment:
| Q |
37 |
aaatgcttggaaggaagcatgtgcatcaacaactgcatcaaaaattgtgattccaggaggtacatacaagatgggtggaatagaacttaaaggtccttgt |
136 |
Q |
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| T |
42843384 |
aaatgcttggaaagcagcatgtggatcaacaactgcaagcaaagttattattccaagagggatatacaagatacatgctgtagatgtaaaaggtccttgt |
42843483 |
T |
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| Q |
137 |
aaggcacctattgaagttcaagttgatggaacaattcaagc |
177 |
Q |
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| T |
42843484 |
aaggctcccattgaagttcaagttgatggcacaattcaagc |
42843524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 274
Target Start/End: Original strand, 42843560 - 42843624
Alignment:
| Q |
210 |
atcaatgggtcaaatttctatatattgaccatcttaccttatcaggaaaaggagtttttgatggt |
274 |
Q |
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| T |
42843560 |
atcaatgggttaaatttggatatgttgactattttaccttatcaggtaaaggtgtttttgatggt |
42843624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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