View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16427_low_22 (Length: 254)

Name: NF16427_low_22
Description: NF16427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16427_low_22
NF16427_low_22
[»] chr4 (10 HSPs)
chr4 (86-235)||(2924532-2924681)
chr4 (96-241)||(31485399-31485542)
chr4 (85-235)||(31485950-31486100)
chr4 (91-191)||(2924424-2924524)
chr4 (86-192)||(14088308-14088414)
chr4 (85-186)||(3464072-3464173)
chr4 (86-176)||(17869644-17869734)
chr4 (114-186)||(21845033-21845105)
chr4 (114-186)||(21900896-21900968)
chr4 (86-130)||(44095304-44095348)
[»] chr5 (3 HSPs)
chr5 (86-241)||(14209789-14209938)
chr5 (86-235)||(14209019-14209180)
chr5 (114-186)||(40719831-40719903)
[»] chr3 (3 HSPs)
chr3 (86-240)||(49340356-49340512)
chr3 (86-134)||(44636976-44637024)
chr3 (85-167)||(46462637-46462719)
[»] chr8 (2 HSPs)
chr8 (22-87)||(5598094-5598158)
chr8 (22-87)||(5637117-5637181)
[»] chr2 (2 HSPs)
chr2 (86-176)||(40321141-40321231)
chr2 (86-166)||(38823220-38823300)
[»] scaffold0020 (1 HSPs)
scaffold0020 (86-130)||(155425-155469)


Alignment Details
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 86 - 235
Target Start/End: Complemental strand, 2924681 - 2924532
Alignment:
Q  86 gagtccatctttgctccattttgcttaactccatttactcctttttaatacacagatgactgccatgcggaaaaaataaatccaagggctgtagttaaaa 185  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| || |||| ||||||    
T  2924681 gagtccatctttgctccattttacttaactccatttactcctttttaatacacagatgactgccatgtggaaaaaataaattcaaaggttgtaattaaaa 2924582  T
Q  186 gaattaacatggtattctttgatacatcagtgcacttccatcttctctcc 235  Q
    ||||||| || ||||||||||||||| |||| ||||||||||||||||||    
T  2924581 gaattaatatagtattctttgatacaccagtacacttccatcttctctcc 2924532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 96 - 241
Target Start/End: Original strand, 31485399 - 31485542
Alignment:
Q  96 ttgctccattttgcttaactccatttactcctttttaatacacagatgactgccatgcggaaaaaataaatccaagggctgtagttaaaagaattaacat 195  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||  ||||| |||| ||||||||||||| |     
T  31485399 ttgctcgattttacttaactccatttactcctttttaatacacagatgactgtcatgtggaaaaaataaat--aagggttgtaattaaaagaattaatag 31485496  T
Q  196 ggtattctttgatacatcagtgcacttccatcttctctcctcatct 241  Q
     ||||||||||||||| |||| ||||||||||||||||||||||||    
T  31485497 agtattctttgatacaccagtacacttccatcttctctcctcatct 31485542  T

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Target: chr4; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 85 - 235
Target Start/End: Complemental strand, 31486100 - 31485950
Alignment:
Q  85 cgagtccatctttgctccattttgcttaactccatttactcctttttaatacacagatgactgccatgcggaaaaaataaatccaagggctgtagttaaa 184  Q
    ||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||| |  ||| |||||||||||||||||||| | || |||||    
T  31486100 cgagtccatctttgctccattttacttaactccatatactcatttttaatacacagatgacagttatgtggaaaaaataaatccaagggttataattaaa 31486001  T
Q  185 agaattaacatggtattctttgatacatcagtgcacttccatcttctctcc 235  Q
    |||||||| || ||||| ||| ||||| |||| ||||| ||| ||||||||    
T  31486000 agaattaatatagtattttttcatacaccagtacactttcattttctctcc 31485950  T

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Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 91 - 191
Target Start/End: Original strand, 2924424 - 2924524
Alignment:
Q  91 catctttgctccattttgcttaactccatttactcctttttaatacacagatgactgccatgcggaaaaaataaatccaagggctgtagttaaaagaatt 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||| |  |||| |||||||||||    
T  2924424 catctttgctccattttgcttaactccatttactcctttttaatacacagatgactgtcatgtggaaaaaacaaatccaaagattgtaattaaaagaatt 2924523  T
Q  191 a 191  Q
    |    
T  2924524 a 2924524  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 192
Target Start/End: Complemental strand, 14088414 - 14088308
Alignment:
Q  86 gagtccatctttgctccattttgcttaactccatttactcctttttaatacacagatgactgccatgcggaaaaaataaatccaagggctgtagttaaaa 185  Q
    |||||||||||  ||||||||  |||  |||||||||| ||| || |||||| ||||||| | |||| ||||||||||||||||| || |||| ||||||    
T  14088414 gagtccatcttacctccatttaacttggctccatttacccctgttcaatacatagatgacagacatgtggaaaaaataaatccaatggttgtaattaaaa 14088315  T
Q  186 gaattaa 192  Q
    | |||||    
T  14088314 ggattaa 14088308  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 186
Target Start/End: Original strand, 3464072 - 3464173
Alignment:
Q  85 cgagtccatctttgctccattttgcttaactccatttactcctttttaatacacagatgactgccatgcggaaaaaataaatccaagggctgtagttaaa 184  Q
    |||||||| |||  ||||||||  |||  |||||||||| ||| || |||||| ||||||| | |||| ||| ||||||||||||| ||||||| |||||    
T  3464072 cgagtccaacttacctccatttaacttggctccatttacacctgttcaatacatagatgacagacatgtggataaaataaatccaatggctgtaattaaa 3464171  T
Q  185 ag 186  Q
    ||    
T  3464172 ag 3464173  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 176
Target Start/End: Original strand, 17869644 - 17869734
Alignment:
Q  86 gagtccatctttgctccattttgcttaactccatttactcctttttaatacacagatgactgccatgcggaaaaaataaatccaagggctg 176  Q
    |||| |||||||||||||||| || |  ||||||||||||||||| ||| || |||||  || ||   || ||||||||||||||||||||    
T  17869644 gagttcatctttgctccatttagccttgctccatttactccttttcaatgcatagatgcatgacacatggtaaaaataaatccaagggctg 17869734  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 186
Target Start/End: Original strand, 21845033 - 21845105
Alignment:
Q  114 ctccatttactcctttttaatacacagatgactgccatgcggaaaaaataaatccaagggctgtagttaaaag 186  Q
    |||||||||| ||| || |||||| ||||||| | |||| ||| ||||||||||||| || |||| |||||||    
T  21845033 ctccatttacacctgttcaatacatagatgacagacatgtggataaaataaatccaatggttgtaattaaaag 21845105  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 186
Target Start/End: Original strand, 21900896 - 21900968
Alignment:
Q  114 ctccatttactcctttttaatacacagatgactgccatgcggaaaaaataaatccaagggctgtagttaaaag 186  Q
    |||||||||| ||| || |||||| ||||||| | |||| ||| ||||||||||||| || |||| |||||||    
T  21900896 ctccatttacacctgttcaatacatagatgacagacatgtggataaaataaatccaatggttgtaattaaaag 21900968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 130
Target Start/End: Original strand, 44095304 - 44095348
Alignment:
Q  86 gagtccatctttgctccattttgcttaactccatttactcctttt 130  Q
    |||| |||||||||||||||||| ||  |||||||||||||||||    
T  44095304 gagttcatctttgctccattttgatttcctccatttactcctttt 44095348  T

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Target: chr5 (Bit Score: 97; Significance: 9e-48; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 86 - 241
Target Start/End: Complemental strand, 14209938 - 14209789
Alignment:
Q  86 gagtccatctttgctccattttgcttaactccatttactcctttttaatacacagatgactgccatgcggaaaaaataaatccaagggctgtagttaaaa 185  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||      ||||||||||| |||| |||||     
T  14209938 gagttcatctttgctccattttgcttaactccatttactcctttttaatacacagatgactgccatgtgga------aaatccaagggttgtaattaaag 14209845  T
Q  186 gaattaacatggtattctttgatacatcagtgcacttccatcttctctcctcatct 241  Q
    ||||||| || ||||||||||||||| |||| ||||||||||||||||||||||||    
T  14209844 gaattaatatagtattctttgatacaccagtacacttccatcttctctcctcatct 14209789  T

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Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 86 - 235
Target Start/End: Original strand, 14209019 - 14209180
Alignment:
Q  86 gagtccatctttgctccattttgcttaactccatttactccttttt------------aatacacagatgactgccatgcggaaaaaataaatccaaggg 173  Q
    |||||||||||||||||||||||||||||| |||||||||||||||            ||||||||||||||||||||| ||||||||||||||||| ||    
T  14209019 gagtccatctttgctccattttgcttaacttcatttactcctttttaatgcacattttaatacacagatgactgccatgtggaaaaaataaatccaaagg 14209118  T
Q  174 ctgtagttaaaagaattaacatggtattctttgatacatcagtgcacttccatcttctctcc 235  Q
     |||| ||||||||||||| || ||||||||||||||| |||| ||||||||||||||||||    
T  14209119 ttgtaattaaaagaattaatatagtattctttgatacaccagtacacttccatcttctctcc 14209180  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 186
Target Start/End: Original strand, 40719831 - 40719903
Alignment:
Q  114 ctccatttactcctttttaatacacagatgactgccatgcggaaaaaataaatccaagggctgtagttaaaag 186  Q
    |||||||||| ||| || |||||| ||||||| | |||| ||| ||||||||||||| || |||| |||||||    
T  40719831 ctccatttacacctgttcaatacatagatgacagacatgtggacaaaataaatccaatggttgtaattaaaag 40719903  T

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Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 86 - 240
Target Start/End: Original strand, 49340356 - 49340512
Alignment:
Q  86 gagtccatctttgctccattttgcttaactccatttactcctttttaatacacagatgactgccatgcggaaaaaataaatccaagggctgtagtt-aaa 184  Q
    ||||| |||||| ||||||||||||| ||||||||||||| | ||||||||| |||||||||||||| ||||||| ||||||||||||||||| || |||    
T  49340356 gagtctatcttttctccattttgcttgactccatttactcttgtttaatacatagatgactgccatgtggaaaaattaaatccaagggctgtaattaaaa 49340455  T
Q  185 agaattaacat-ggtattctttgatacatcagtgcacttccatcttctctcctcatc 240  Q
    | |||||| ||  ||||||||||||||||||   |||||||||||||| || |||||    
T  49340456 aaaattaatataagtattctttgatacatcaacacacttccatcttctttcatcatc 49340512  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 134
Target Start/End: Original strand, 44636976 - 44637024
Alignment:
Q  86 gagtccatctttgctccattttgcttaactccatttactcctttttaat 134  Q
    |||| ||||||||||||||||| ||| |||| |||||||||||||||||    
T  44636976 gagttcatctttgctccattttactttactctatttactcctttttaat 44637024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 167
Target Start/End: Complemental strand, 46462719 - 46462637
Alignment:
Q  85 cgagtccatctttgctccattttgcttaactccatttactcctttttaatacacagatgactgccatgcggaaaaaataaatc 167  Q
    ||||| |||||||||||||||| ||    ||||||||||||||||| |||||| ||||||||| ||   || |||||||||||    
T  46462719 cgagtgcatctttgctccatttagcaaccctccatttactccttttgaatacatagatgactgacacatggcaaaaataaatc 46462637  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 5598158 - 5598094
Alignment:
Q  22 ttaagtagtttaatggttaaaatttacctcatttaaaattaataagtgggggtgtctaagattcga 87  Q
    ||||||||||||||||||||||||||| || |||||||| ||||||| ||||||||| ||||||||    
T  5598158 ttaagtagtttaatggttaaaatttacatcttttaaaataaataagt-ggggtgtctgagattcga 5598094  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 5637117 - 5637181
Alignment:
Q  22 ttaagtagtttaatggttaaaatttacctcatttaaaattaataagtgggggtgtctaagattcga 87  Q
    ||||||||||||||||||||||||||| || |||||||| ||||||| ||||||||| ||||||||    
T  5637117 ttaagtagtttaatggttaaaatttacatcttttaaaataaataagt-ggggtgtctgagattcga 5637181  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 176
Target Start/End: Complemental strand, 40321231 - 40321141
Alignment:
Q  86 gagtccatctttgctccattttgcttaactccatttactcctttttaatacacagatgactgccatgcggaaaaaataaatccaagggctg 176  Q
    |||| |||||||||||||||| || |  ||||||||||||||||| ||| || |||||  || ||   || ||||||||||||||||||||    
T  40321231 gagttcatctttgctccatttagccttgctccatttactccttttcaatgcatagatgcatgacacatggtaaaaataaatccaagggctg 40321141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 166
Target Start/End: Original strand, 38823220 - 38823300
Alignment:
Q  86 gagtccatctttgctccattttgcttaactccatttactcctttttaatacacagatgactgccatgcggaaaaaataaat 166  Q
    |||| ||||||||||||||||   ||  ||||||||||||||||| |||  |||||||  || |||| |||||||||||||    
T  38823220 gagttcatctttgctccatttatatttgctccatttactccttttgaatttacagatgtgtgacatgtggaaaaaataaat 38823300  T

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Target: scaffold0020 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 130
Target Start/End: Original strand, 155425 - 155469
Alignment:
Q  86 gagtccatctttgctccattttgcttaactccatttactcctttt 130  Q
    |||| |||||||||||||||| || | ||||||||||||||||||    
T  155425 gagttcatctttgctccatttagccttactccatttactcctttt 155469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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