View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16427_low_23 (Length: 248)
Name: NF16427_low_23
Description: NF16427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16427_low_23 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 14727326 - 14727546
Alignment:
| Q |
17 |
aattctcacctcgctcactgtacccttcttctcggtgaacggaaccaaacctgtccacacatctaaccaaaatctagtgaaaccagtgctcccttgccat |
116 |
Q |
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| T |
14727326 |
aattctcacctcgctcactgtacccttcttctcggtgaacggaaccaaacctgtccacacatctaaccaaaatctagtgaaaccagtgctcccttgccat |
14727425 |
T |
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| Q |
117 |
catatctacccctccaatatctttccaccagcacgaagaacaatacagaaaagcttcctcttcccagattcctctctacaaaatctctttcccgtatttc |
216 |
Q |
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| T |
14727426 |
catatctacccctccaatatctttccaccagcacgaagaacaatacagaaaagcttcctcttcccagattcctctctacaaaatctctttcccgtatttc |
14727525 |
T |
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| Q |
217 |
tctatagaatctctttccttt |
237 |
Q |
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||||||||||||||||||||| |
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| T |
14727526 |
tctatagaatctctttccttt |
14727546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 45 - 248
Target Start/End: Complemental strand, 17596123 - 17595920
Alignment:
| Q |
45 |
ttctcggtgaacggaaccaaacctgtccacacatctaaccaaaatctagtgaaaccagtgctcccttgccatcatatctacccctccaatatctttccac |
144 |
Q |
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|||||| | ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
17596123 |
ttctcgcttaacagaaccaaacctgtccacacatctaaccaaaatctagtgaaacaagtgctcccttgccatcatatctacccctcgaatatctttccac |
17596024 |
T |
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| Q |
145 |
cagcacgaagaacaatacagaaaagcttcctcttcccagattcctctctacaaaatctctttcccgtatttctctatagaatctctttcctttgcttctc |
244 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
17596023 |
cagcacgaagaacaatacagaaaagcttcctctccccagattcctctctacaaaatctctttcccgtatttctctatagaatctctttcctgtatttctc |
17595924 |
T |
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| Q |
245 |
cact |
248 |
Q |
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|||| |
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| T |
17595923 |
cact |
17595920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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