View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16427_low_4 (Length: 536)
Name: NF16427_low_4
Description: NF16427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16427_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 188 - 518
Target Start/End: Original strand, 34361037 - 34361367
Alignment:
| Q |
188 |
tggtggacatggaggcatcgcaatatgatgtgccttagcaatgatacttggtcccttacgcgtcttagtttccacattcagaattctgcagataccataa |
287 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
34361037 |
tggtggacatggaggcatcacaacatgatgtgccttagcaatgatacttggtcccttacgcgacttagtttctacattcagaattctgcggataccataa |
34361136 |
T |
|
| Q |
288 |
aaaccagctttcaaaacaacagtgctactcctcatgatcgaatggttagatggaatagtaataaccatctctgtcatatcctaaatgtggatgggagctg |
387 |
Q |
| |
|
|| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| || || |
|
|
| T |
34361137 |
aatccagctttcaaaacagcagtgccactcctcatgatcgaatggttagatggaatagtaataaccatctctgtcacattctaaatgtagatggaagttg |
34361236 |
T |
|
| Q |
388 |
ttctggtactccaactcgcgcaggttatgggggaattattcgaaacagtgccggcctttacctctctggcttctccggtttcattgcagactctactgat |
487 |
Q |
| |
|
||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||| || |
|
|
| T |
34361237 |
ttccggtattccaactcgcgcaggttatggaggaattattcgaaacagtgccggcctatacctctcttgcttctccggtttcatcgcagactctacggac |
34361336 |
T |
|
| Q |
488 |
attttgctcgcagagctcaccgcaattcacc |
518 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |
|
|
| T |
34361337 |
attttgctcgcagagctcaccgcaatccacc |
34361367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 86 - 189
Target Start/End: Original strand, 34360902 - 34361004
Alignment:
| Q |
86 |
gactgtaaattctctaccgcaatctggcagaagatcggattcataaatcctgaatttttctctcaaaattgcgcatataattgggcttaaaaccaactca |
185 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||| |||||||||||||| ||| ||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
34360902 |
gactataaattctctactgcaatctggcagaagatcggattctcaaatcctgaattttactcacaaaacagcgcatataatt-ggcttaaaaccaactca |
34361000 |
T |
|
| Q |
186 |
tctg |
189 |
Q |
| |
|
|||| |
|
|
| T |
34361001 |
tctg |
34361004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 145; Significance: 4e-76; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 358 - 518
Target Start/End: Complemental strand, 26702067 - 26701907
Alignment:
| Q |
358 |
ctgtcatatcctaaatgtggatgggagctgttctggtactccaactcgcgcaggttatgggggaattattcgaaacagtgccggcctttacctctctggc |
457 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
26702067 |
ctgtcatattctaaatgtggatgggagttgttccggtactccaactcgcgcaggttatgggggaattattcgaaacagtgtcggcctttacctctctggc |
26701968 |
T |
|
| Q |
458 |
ttctccggtttcattgcagactctactgatattttgctcgcagagctcaccgcaattcacc |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26701967 |
ttctccggtttcattgcagactctactgatattttgctcgcagagctcaccgcaattcacc |
26701907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 337 - 518
Target Start/End: Complemental strand, 46954591 - 46954410
Alignment:
| Q |
337 |
atggaatagtaataaccatctctgtcatatcctaaatgtggatgggagctgttctggtactccaactcgcgcaggttatgggggaattattcgaaacagt |
436 |
Q |
| |
|
|||||| |||||||| |||| ||| |||||||| || |||||||||||||||| | ||||||| ||||||||||| ||||||| ||||||| |||||| |
|
|
| T |
46954591 |
atggaacagtaataatcatcactgccatatccttaacgtggatgggagctgtttaagaactccaattcgcgcaggttttgggggagttattcgtaacagt |
46954492 |
T |
|
| Q |
437 |
gccggcctttacctctctggcttctccggtttcattgcagactctactgatattttgctcgcagagctcaccgcaattcacc |
518 |
Q |
| |
|
||||| | |||||||||||||||||||||||||||||||| || ||||| ||| |||| || |||||| | |||||||||| |
|
|
| T |
46954491 |
gccggtttatacctctctggcttctccggtttcattgcagattccactgacattctgcttgctgagctctcggcaattcacc |
46954410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 223 - 310
Target Start/End: Complemental strand, 26702156 - 26702069
Alignment:
| Q |
223 |
tagcaatgatacttggtcccttacgcgtcttagtttccacattcagaattctgcagataccataaaaaccagctttcaaaacaacagt |
310 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26702156 |
tagcaatgatacttggtcccttacgcgacttagtttccacattcagaattttgcagataccataaaaaccagctttcaaaacaacagt |
26702069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 257 - 441
Target Start/End: Complemental strand, 46954789 - 46954605
Alignment:
| Q |
257 |
ttccacattcagaattctgcagataccataaaaaccagctttcaaaacaacagtgctactcctcatgatcgaatggttagatggaatagtaataaccatc |
356 |
Q |
| |
|
|||||||| ||||||||||| ||||| || ||| | || ||||||| |||| | | | | ||| |||||| ||||| | |||||| |||||||| |||| |
|
|
| T |
46954789 |
ttccacatccagaattctgctgatactatcaaagcaagttttcaaagcaacggcgtttcacctactgatcgtatggtcaaatggaacagtaataatcatc |
46954690 |
T |
|
| Q |
357 |
tctgtcatatcctaaatgtggatgggagctgttctggtactccaactcgcgcaggttatgggggaattattcgaaacagtgccgg |
441 |
Q |
| |
|
||| |||||||| || |||||||||||||||| | ||||||| ||||||||||| ||||||| ||||||| ||||||||||| |
|
|
| T |
46954689 |
actgccatatccttaacgtggatgggagctgtttaagaactccaattcgcgcaggttttgggggagttattcgtaacagtgccgg |
46954605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 387
Target Start/End: Complemental strand, 38645584 - 38645520
Alignment:
| Q |
323 |
gatcgaatggttagatggaatagtaataaccatctctgtcatatcctaaatgtggatgggagctg |
387 |
Q |
| |
|
||||| ||||| |||||||||| ||| ||||||||||||||| |||| ||||| ||||| ||||| |
|
|
| T |
38645584 |
gatcgtatggtaagatggaataataacaaccatctctgtcatgtcctgaatgttgatggcagctg |
38645520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 3e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 188 - 518
Target Start/End: Complemental strand, 50235106 - 50234776
Alignment:
| Q |
188 |
tggtggacatggaggcatcgcaatatgatgtgccttagcaatgatacttggtcccttacgcgtcttagtttccacattcagaattctgcagataccataa |
287 |
Q |
| |
|
|||||||||||||| ||||| || ||||||||||||||| | || |||||||| | || || |||| |||||||| || |||| ||| ||||| || | |
|
|
| T |
50235106 |
tggtggacatggagacatcgaaacatgatgtgccttagccaagaaacttggtctccaactcggcttaacttccacatccaaaattatgccgatacaatca |
50235007 |
T |
|
| Q |
288 |
aaaccagctttcaaaacaacagtgctactcctcatgatcgaatggttagatggaatagtaataaccatctctgtcatatcctaaatgtggatgggagctg |
387 |
Q |
| |
|
|| | || ||||||| |||| ||| | | ||| |||||| ||||| | |||||| || ||||| |||| ||| |||||||| |||||||||||||| || |
|
|
| T |
50235006 |
aagcaagttttcaaagcaacggtgattcaactcctgatcgtatggtcaaatggaacagcaataatcatcactgccatatccttaatgtggatgggagttg |
50234907 |
T |
|
| Q |
388 |
ttctggtactccaactcgcgcaggttatgggggaattattcgaaacagtgccggcctttacctctctggcttctccggtttcattgcagactctactgat |
487 |
Q |
| |
|
||| | ||||||| ||| ||||| | ||||||| ||||||| |||||||||||| | |||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
50234906 |
ttcatgaactccaattcgtgcaggctttgggggagttattcgtaacagtgccggcttatacctctctggcttctccggtttcattgcagattccactgac |
50234807 |
T |
|
| Q |
488 |
attttgctcgcagagctcaccgcaattcacc |
518 |
Q |
| |
|
||| | || || |||||| | |||||||||| |
|
|
| T |
50234806 |
attctacttgctgagctctcggcaattcacc |
50234776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 387
Target Start/End: Original strand, 32892160 - 32892224
Alignment:
| Q |
323 |
gatcgaatggttagatggaatagtaataaccatctctgtcatatcctaaatgtggatgggagctg |
387 |
Q |
| |
|
||||| ||||| |||||||||| ||| ||||||||||||||| |||| || || ||||| ||||| |
|
|
| T |
32892160 |
gatcgtatggtaagatggaataataacaaccatctctgtcatgtcctgaaagttgatggcagctg |
32892224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 8e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 372 - 518
Target Start/End: Original strand, 11052549 - 11052694
Alignment:
| Q |
372 |
atgtggatgggagctgttctggtactccaactcgcgcaggttatgggggaattattcgaaacagtgccggcctttacctctctggcttctccggtttcat |
471 |
Q |
| |
|
|||| |||| ||| |||||||||||||||||||||||||||| |||||| |||||| ||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
11052549 |
atgtagatgagagttgttctggtactccaactcgcgcaggttttgggggg-ttattcaaaatagtgccggtttttacctctctggcttctccggtttcat |
11052647 |
T |
|
| Q |
472 |
tgcagactctactgatattttgctcgcagagctcaccgcaattcacc |
518 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
11052648 |
tgcagactctactgatattttgctcgctaagctcaccacaattcacc |
11052694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 387
Target Start/End: Complemental strand, 11585371 - 11585307
Alignment:
| Q |
323 |
gatcgaatggttagatggaatagtaataaccatctctgtcatatcctaaatgtggatgggagctg |
387 |
Q |
| |
|
||||| ||||| |||||||||| ||| ||||||||||||||| |||| || || ||||| ||||| |
|
|
| T |
11585371 |
gatcgtatggtaagatggaataataacaaccatctctgtcatgtcctgaacgttgatggcagctg |
11585307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University