View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16427_low_6 (Length: 488)
Name: NF16427_low_6
Description: NF16427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16427_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 1 - 470
Target Start/End: Original strand, 34342139 - 34342608
Alignment:
| Q |
1 |
ctaaggaaattcaagtttccagacagtttatttccagagatatcaagaaagcgaagacgaatgagagaagagaattcagaaggaacttcaccagagaaaa |
100 |
Q |
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| T |
34342139 |
ctaaggaaattcaagtttccagaaagtttatttccagagatatcaagaaagcgaagacgaatgagagaagagaattcagaaggaacttcaccagagaaaa |
34342238 |
T |
|
| Q |
101 |
gattattagcaaggttcagaatctcaagctttctgcagtcaactatagaggttggtatttggtcaacgagtttgttgtctgaaagagagatttctttgag |
200 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
34342239 |
gattattagcaaggttcagaaactcaagctttctgcagtcaactatagaggttggtatttggtcaacgagtttgttgtctgaaagagagatttctttcag |
34342338 |
T |
|
| Q |
201 |
ctctgtgagttttccaatggttggtgaaagtatgccactgagttttcttgatttgaaaacaagttttgttactctgagtgcatagctttcattgttggtg |
300 |
Q |
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| T |
34342339 |
ctctgtgagttttccaatggttggtgaaagtatgccactgagttttcttgatttgaaaacaagttttgttactctgagtgcatagctttcattgttggtg |
34342438 |
T |
|
| Q |
301 |
agtcttctctcacagaacacaccttccttgttacataggttgtttgtagtagtatcaaggttgagtcctaggttgttttgtagagttgaaagagcttttg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34342439 |
agtcttctctcacagaacacaccttccttgttacataggttgtttgtagtagtatcaaggttgagtcctaggttgttttgtagagttgaaagagcttttg |
34342538 |
T |
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| Q |
401 |
tgtctgaagggtgaagggtgagtttagcatggattgagaaaagaagggacaaaaatggtaagagtaagag |
470 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
34342539 |
tgtctgaagggtgaagggtgagtttagcatggattgagaaaagaagggacaaaaatgataagagtaagag |
34342608 |
T |
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