View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16427_low_7 (Length: 480)
Name: NF16427_low_7
Description: NF16427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16427_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 399; Significance: 0; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 16 - 462
Target Start/End: Complemental strand, 35789812 - 35789365
Alignment:
| Q |
16 |
gtcaaagaggcattcaacaatgcaaaaaacaggttctgggctgagatcaacgacattccctgcgacataccatcgcctgatcctaacatttacatagatg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35789812 |
gtcaaagaggcattcaacaatgcaaaaaacaggttctgggctgagatcaacgacattccctgcgacataccatcgcctgatcctaacatttacatagatg |
35789713 |
T |
|
| Q |
116 |
atatagactggaacgcaagcgtcaacactgaactttatctggatgtggaaagagaagtagaggcccgccgcaacattgaagaaaaaggcgaggaagtcgt |
215 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
35789712 |
atatagactggaacgcaagcgtcgacactgaactttatctggatgtggaaagagaagtagaggcctgccgcaacattgaagaaaaaggcgaggaagtcgt |
35789613 |
T |
|
| Q |
216 |
gattctcagtagttctctcttcttggatcagtccttatcgggtccaggatggggggacaaagaagacgaaaagttaacaaagccttatgaaccaaatgat |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
35789612 |
gattctcagtagttctctcttcttggatcagtccttatcgggtccaggatggggggacgaagaagacgaaaagttaacaaagccttatgaaccaaatgat |
35789513 |
T |
|
| Q |
316 |
gttgctctgggatgggaatcgaaccaacatggaaat-accnnnnnnncttttggaaacagtatgatgcttccattgaacatgctgcaaaagaatatggat |
414 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
35789512 |
gttgctcggggatgggaatcgaaccaacatggaaataaccaaaaaaacttttggaaacagtatgatgctcccattgaacatgctgcaaaagaatatggat |
35789413 |
T |
|
| Q |
415 |
ggaaaaatggtcagaatgattctcaaggatggaatcagagggagcaat |
462 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35789412 |
ggaaaaatggtcagaatgattctcaaggatggaatcagagggagcaat |
35789365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 14 - 459
Target Start/End: Complemental strand, 35799457 - 35798996
Alignment:
| Q |
14 |
ctgtcaaagaggcattcaacaatgcaaaaaacaggttctgggctgagatcaacgacattccctgcgacataccatcgcctgatcctaacatttacataga |
113 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||| |||||||||| ||| ||||||||||||||||||| |
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|
| T |
35799457 |
ctgtcaaagaggcattcgacaatgcaaaaaacaggtattgggctgagatcaacggcattccctgggacataccattgcccaatcctaacatttacataga |
35799358 |
T |
|
| Q |
114 |
tgatatagactggaacgcaagcgtcaacactgaactttatctggatgtggaaagagaagtagaggcccgccgcaacattgaagaaaaaggcgaggaagtc |
213 |
Q |
| |
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|||| |||| | || ||||| ||| | |||||||| ||| ||||||||||| ||||| ||||||||||| |||||| |||||||||| |||| | |
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| T |
35799357 |
tgatgtagattcaaatgcaagtgtcgattctgaacttcatcgggatgtggaaatagaagcagaggcccgccacaacataaaagaaaaaggagaggcggct |
35799258 |
T |
|
| Q |
214 |
gtgattctcagtagttctctcttcttggatcagtccttatcgggtc---------------caggatggggggacaaagaagacgaaaagttaacaaagc |
298 |
Q |
| |
|
|||||||| | ||||||||| ||||| ||||||||| || |||| | |||||||||||| |||||||||||||||||||||||| |
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|
| T |
35799257 |
gtgattctaggcagttctctcctcttgaatcagtcctcttccggtcttggattgggacctactggatggggggacgaagaagacgaaaagttaacaaagc |
35799158 |
T |
|
| Q |
299 |
cttatgaaccaaatgatgttgctctgggatgggaatcgaaccaacatggaaat-accnnnnnnncttttggaaacagtatgatgcttccattgaacatgc |
397 |
Q |
| |
|
||| |||||||||| ||| |||||||||||| ||||| |||||||||| |||| | ||| || |||||||| |||| || |||||||||| |
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|
| T |
35799157 |
cttctgaaccaaattatgctgctctgggatgcgaatcaaaccaacatgaaaataatgaaacaaacttatgtgaacagtatcatgcgcccgttgaacatgc |
35799058 |
T |
|
| Q |
398 |
tgcaaaagaatatggatggaaaaatggtcagaatgattctcaaggatggaatcagagggagc |
459 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
35799057 |
tgcaaaagaacatggatggcaaaatggtcagaatgattctcagggatggaatcagagggagc |
35798996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 14 - 333
Target Start/End: Complemental strand, 35785962 - 35785646
Alignment:
| Q |
14 |
ctgtcaaagaggcattcaacaatgcaaaaaacaggttctgggctgagatcaacgacattccctgcgacataccatcgcctgatcctaacatttacataga |
113 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |||||||||||||||| | |||||||| ||||||||| ||||||||||||||||||||| || |
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|
| T |
35785962 |
ctgtcaaagaggcatttgacaatgcaaaaaacaggttttgggctgagatcaacggccttccctgcaacataccattgcctgatcctaacatttacatcga |
35785863 |
T |
|
| Q |
114 |
tgatatagactggaacgcaagcgtcaacactgaactttatctggatgtggaaagagaagtagaggcccgccgcaacattgaagaaaaaggcgaggaagtc |
213 |
Q |
| |
|
||| |||| ||||| ||||| | || ||||||||||| |||| ||||||||||||| |||||||||||||||||| || ||||| ||||||| || |
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|
| T |
35785862 |
cgatgtagattggaatgcaagtattgactctgaactttatttggaggtggaaagagaagcagaggcccgccgcaacatggatcaaaaacccgaggaaatc |
35785763 |
T |
|
| Q |
214 |
gtgattctcagtagttctctcttcttggatcagtccttatcgggtccaggatggggggacaaagaagacgaaaagttaacaaagccttatgaaccaaatg |
313 |
Q |
| |
|
||||||||| ||||||||||| ||||| |||||||||| || ||||| |||||||||||||||||| ||||| |||||||||| | ||||||||| |
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|
| T |
35785762 |
gtgattctcggtagttctctcctcttgaatcagtccttgtctggtcctggatggggggacaaagaa---gaaaacgtaacaaagccctctgaaccaaact |
35785666 |
T |
|
| Q |
314 |
atgttgctctgggatgggaa |
333 |
Q |
| |
|
||| ||||| |||||||||| |
|
|
| T |
35785665 |
atgctgctcagggatgggaa |
35785646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 14 - 352
Target Start/End: Complemental strand, 35755866 - 35755525
Alignment:
| Q |
14 |
ctgtcaaagaggcattcaacaatgcaaaaaacaggttctgggctgagatcaacgacattccctgcgacataccatcgcctgatcctaacatttacataga |
113 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||| |||||||||| ||||||||||||||| ||| | || |
|
|
| T |
35755866 |
ctgtaaaagaggcattcaacaatgcaaaaaacaggttttgggctgagatcaacggccttccctgtgacataccattgcctgatcctaacatatacctcga |
35755767 |
T |
|
| Q |
114 |
tgatatagactggaacgcaagcgtcaacactgaactttatctggatgtggaaagagaagtagaggcccgccgcaacattgaagaaaaaggcgaggaagtc |
213 |
Q |
| |
|
|||| |||| ||||| |||| | | ||||||| |||||||||||||||||||||| || |||||||||||||| ||||||||||||||||| | | |
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|
| T |
35755766 |
tgatgtagattggaatgcaactattgatcctgaactatatctggatgtggaaagagaagcagtagcccgccgcaacatagaagaaaaaggcgaggaggcc |
35755667 |
T |
|
| Q |
214 |
gtgattctcagtagttctctcttcttggatcagtccttatcgggtccaggatggggggacaaagaagacgaa----aagttaacaaagccttatgaacca |
309 |
Q |
| |
|
|||||||||||||| ||| | ||||| ||| ||||| || |||||||||||||||||| ||||||| || ||||| | |||||||| ||| ||| |
|
|
| T |
35755666 |
gtgattctcagtagctcttttctcttgagtcattccttttcaggtccaggatggggggacgaagaagaaaaagaagaagtt-agaaagccttctgagcca |
35755568 |
T |
|
| Q |
310 |
aatgatgttgctctgggatgggaatcgaaccaacatggaaata |
352 |
Q |
| |
|
||| ||| || || |||||||||||| || ||||||| ||||| |
|
|
| T |
35755567 |
aattatgctggtcagggatgggaatcaaatcaacatgaaaata |
35755525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 14 - 269
Target Start/End: Complemental strand, 35761024 - 35760769
Alignment:
| Q |
14 |
ctgtcaaagaggcattcaacaatgcaaaaaacaggttctgggctgagatcaacgacattccctgcgacataccatcgcctgatcctaacatttacataga |
113 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| || ||||||||||||||||| |||||||||||||||||| ||||||||| ||| | |||| || |
|
|
| T |
35761024 |
ctgtcaaagaggcatttgacaatgcaaaaaacagattttgggctgagatcaacgaatttccctgcgacataccattgcctgatcccgacactcacattga |
35760925 |
T |
|
| Q |
114 |
tgatatagactggaacgcaagcgtcaacactgaactttatctggatgtggaaagagaagtagaggcccgccgcaacattgaagaaaaaggcgaggaagtc |
213 |
Q |
| |
|
|||| |||| ||||| ||||| || || |||||||||||| ||||||||||||||||| |||||||||||| ||||| |||||||||||||||| || |
|
|
| T |
35760924 |
tgatgtagattggaatgcaagtgtggaccctgaactttatcaggatgtggaaagagaagcagaggcccgccgtaacatggaagaaaaaggcgaggcagct |
35760825 |
T |
|
| Q |
214 |
gtgattctcagtagttctctcttcttggatcagtccttatcgggtccaggatgggg |
269 |
Q |
| |
|
|||||||| |||||||||| ||||| |||||||||| || ||||| |||||||| |
|
|
| T |
35760824 |
gtgattcttggtagttctcttctcttgaatcagtccttttccggtcctggatgggg |
35760769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 14 - 206
Target Start/End: Complemental strand, 35766507 - 35766315
Alignment:
| Q |
14 |
ctgtcaaagaggcattcaacaatgcaaaaaacaggttctgggctgagatcaacgacattccctgcgacataccatcgcctgatcctaacatttacataga |
113 |
Q |
| |
|
||||||||||||||||| ||||||| || |||||||| |||||||| ||||||| | |||||||||||||||||| |||||||||||||||| |||| || |
|
|
| T |
35766507 |
ctgtcaaagaggcattcgacaatgctaagaacaggttttgggctgatatcaacggctttccctgcgacataccattgcctgatcctaacattcacatcga |
35766408 |
T |
|
| Q |
114 |
tgatatagactggaacgcaagcgtcaacactgaactttatctggatgtggaaagagaagtagaggcccgccgcaacattgaagaaaaaggcga |
206 |
Q |
| |
|
||| | || | | |||||| ||| || || |||||||||| ||||||||||| |||| ||||||| | |||||| ||||||||| |||| |
|
|
| T |
35766407 |
cgatgtggattcaaccgcaagtgtcgaccctcaactttatcttgatgtggaaagtgaagcagaggccagtgacaacatggaagaaaaacgcga |
35766315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 290 - 352
Target Start/End: Complemental strand, 35760733 - 35760671
Alignment:
| Q |
290 |
taacaaagccttatgaaccaaatgatgttgctctgggatgggaatcgaaccaacatggaaata |
352 |
Q |
| |
|
|||||||||||| |||||| ||| ||| ||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
35760733 |
taacaaagccttctgaaccgaattatgctgctcagggatgggaatcgaaccaacatgaaaata |
35760671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 398 - 459
Target Start/End: Complemental strand, 35766104 - 35766043
Alignment:
| Q |
398 |
tgcaaaagaatatggatggaaaaatggtcagaatgattctcaaggatggaatcagagggagc |
459 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||||||| | ||| ||||||||||| |
|
|
| T |
35766104 |
tgcaaaagaatatggatggaaaaatgggcagaataattctcaaaggcggattcagagggagc |
35766043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 398 - 458
Target Start/End: Complemental strand, 35785604 - 35785544
Alignment:
| Q |
398 |
tgcaaaagaatatggatggaaaaatggtcagaatgattctcaaggatggaatcagagggag |
458 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||||||| | |||| |||||||||| |
|
|
| T |
35785604 |
tgcaaaagaatatgggtggaaaaatagtcagaatgattctcagaggtggattcagagggag |
35785544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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