View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16427_low_8 (Length: 452)
Name: NF16427_low_8
Description: NF16427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16427_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 30 - 434
Target Start/End: Original strand, 36226996 - 36227408
Alignment:
| Q |
30 |
tcaatgtgattgtaaactatgttctcgtta----gtaatgaaaatctaagattacaagc------aaacaacttatgtgccttacttgcaatacaagtaa |
119 |
Q |
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| T |
36226996 |
tcaatgtgattgtaaactatgttctcattatttagtaatgaaaatctaagattacaagcttatataaacaacttatgtggcttacttgcaatacaagtaa |
36227095 |
T |
|
| Q |
120 |
tcaatcaaaaccaaccaactcgatcaaaatagctaacaaacaactaactggttttaactacnnnnnnnnnnnnnnnnnngcaactaacttgaattaaaca |
219 |
Q |
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| T |
36227096 |
tcaatcaaaaccaaccaactcgatcaaaatagctaacaaacaactaactgtttttaactactttttttttttt------gcaactaacttgaattaaaca |
36227189 |
T |
|
| Q |
220 |
attgttcagcttgcaaga--acaaacatcaactccca--caacaacaatctaataagtactaaagagtcacttgagtgagtttggagactgaaattgcaa |
315 |
Q |
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|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
36227190 |
attgttcagcttgcaagagaacaaacatcaactcccatacaacaacaatctaataagtactaaagagtcacctgagtgagtttggagactgaaattgcaa |
36227289 |
T |
|
| Q |
316 |
ttgcagcctttgcatcgtcatcctcctcgagacatttgagagctctgtcgaacacaagtttattgtcctcattttaaactaccaggaagcaaaagacaaa |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36227290 |
ttgcagcctttgcatcgtcatcctcctcgagacatttgagagctctgtcgaacacaagtttattgtcctcattttaaactaccaggaagcaaaagacaaa |
36227389 |
T |
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| Q |
416 |
taaaacatcacaatagaag |
434 |
Q |
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| T |
36227390 |
taaaacatcacaatagaag |
36227408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 215 - 348
Target Start/End: Original strand, 36223238 - 36223373
Alignment:
| Q |
215 |
aaacaattgttcagcttgcaaga--acaaacatcaactcccacaacaacaatctaataagtactaaagagtcacttgagtgagtttggagactgaaattg |
312 |
Q |
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|||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||| | ||||||||||||||||| |
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| T |
36223238 |
aaacaattattcagcttgcaagagaacaaacatcaattcccacaacaacaatctaataagtattaaagagtcacctgagtaactttggagactgaaattg |
36223337 |
T |
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| Q |
313 |
caattgcagcctttgcatcgtcatcctcctcgagac |
348 |
Q |
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| T |
36223338 |
caattgcggcctttgcatcgtcatcctcctcgagac |
36223373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 30 - 180
Target Start/End: Original strand, 36222951 - 36223107
Alignment:
| Q |
30 |
tcaatgtgattgtaaactatgttctcgttagtaatgaaaatctaagattacaagca-------aacaacttatgtgccttacttgcaatacaagtaatca |
122 |
Q |
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| T |
36222951 |
tcaatgtgattgtaaactatgttctcattagtaatgaaaatctgagattacaagcttatatacaactacttatatggcttacttgcaatacaagtaatca |
36223050 |
T |
|
| Q |
123 |
atcaaaaccaaccaactcgatcaaaatagctaacaaacaactaactggttttaactac |
180 |
Q |
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||| |||| ||| ||||| ||||||||||||||| || ||||||||| |||||||||| |
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| T |
36223051 |
atc-aaactaactaactccatcaaaatagctaaccaaaaactaactgtttttaactac |
36223107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 100 - 180
Target Start/End: Complemental strand, 28067375 - 28067296
Alignment:
| Q |
100 |
cttacttgcaatacaagtaatcaatcaaaaccaaccaactcgatcaaaatagctaacaaacaactaactggttttaactac |
180 |
Q |
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| T |
28067375 |
cttacttccaatacaagtaattattcaaaactaactaactccatcaaaatagctaacaaactaataact-gttttaactac |
28067296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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