View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16428_high_3 (Length: 365)

Name: NF16428_high_3

Description: NF16428

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF16428_high_3

[»] chr5 (5 HSPs)

Alignment Details

Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 5)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 292; E-Value: 1e-164

Query Start/End: Original strand, 16 - 365

Target Start/End: Complemental strand, 41366924 - 41366574

Alignment:

Q	16	catctcagacatcgtccataacatagcttccgaagatgattgagtgccaccaacaaacatgtcctgcaaatggattaacggtagccttgtctaatatcaa	115	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	41366924	catctcagacatcgtccataacacagcttcagaagatgattgagtgccaccaacaaacatgtcctgcaaatggattaacggtagccttgtctaatatcaa	41366825	T

Q	116	accaaaatgaatttcttctatacaagctcaacnnnnnnnnntg-ttattaatttgatgttccctccaaattactatactggaaattttacttttaagcaa	214	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|
T	41366824	accaaaatgaatttcttctatacaaactcaacaaaaaaaaaaaattattaatttgatgttccctccaaattactatactggaaattttacttttaaacaa	41366725	T

Q	215	atgaaaaattatgaactatcctttaaattgtgaaaataaatgtgttaacatattcgatttgttgactaacctggatgaccgattttatattgtcgtcggt	314	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	41366724	atgaaaaattatgaactatcctttaaattgtgaaaataaatgtgttaacatattcgatttgttgactaacctggatgaccgattttatattgtcgtcggt	41366625	T

Q	315	caagggatgttgtgagtgatttacacgttgaatcttgagaagaacatctac	365	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	41366624	caagggatgttgtgagtgatttacacgttgaatcttgagaagaacatctac	41366574	T

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Target: chr5; HSP #2

Raw Score: 46; E-Value: 4e-17

Query Start/End: Original strand, 273 - 365

Target Start/End: Complemental strand, 41324578 - 41324483

Alignment:

Q	273	ttgttgactaacctggatgaccgattttatattgtcgtcggtcaagggatgttgtgagtgat---ttacacgttgaatcttgagaagaacatctac	365	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	41324578	ttgttgactaacctggatgattgactttatattgtcatcggttaaaggatgttgtgagtgataattttcctgttgaatcttgagaagaacatctac	41324483	T

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Target: chr5; HSP #3

Raw Score: 42; E-Value: 0.000000000000009

Query Start/End: Original strand, 273 - 365

Target Start/End: Complemental strand, 41316509 - 41316414

Alignment:

Q	273	ttgttgactaacctggatgaccgattttatattgtcgtcggtcaagggatgttgtgagtgat---ttacacgttgaatcttgagaagaacatctac	365	Q
		\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	41316509	ttgtggactaacctggatgattgattttatattgtcatcagttaaaggatgttgtgagtgataattttcctgttgaatcttgagaagaacatctac	41316414	T

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Target: chr5; HSP #4

Raw Score: 37; E-Value: 0.000000000008

Query Start/End: Original strand, 278 - 365

Target Start/End: Complemental strand, 41328471 - 41328381

Alignment:

Q	278	gactaacctggatgaccgattttatattgtcgtcggtcaagggatgttgtgagtgat---ttacacgttgaatcttgagaagaacatctac	365	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\| \|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	41328471	gactaacctggatgattgatttcatattgtcatcggttaaaggatgttctgagtgataattttcctgttgaatcttgagaagaacatctac	41328381	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5

Raw Score: 37; E-Value: 0.000000000008

Query Start/End: Original strand, 279 - 362

Target Start/End: Complemental strand, 41337412 - 41337326

Alignment:

Q	279	actaacctggatgaccgattttatattgtcgtcggtcaagggatgttgtgagtg---atttacacgttgaatcttgagaagaacatc	362	Q
		\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\| \|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	41337412	actaacctgaatgactgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatc	41337326	T

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