View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16428_high_5 (Length: 289)

Name: NF16428_high_5
Description: NF16428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16428_high_5
NF16428_high_5
[»] chr3 (29 HSPs)
chr3 (68-277)||(1627299-1627509)
chr3 (68-266)||(1610164-1610376)
chr3 (68-193)||(1615118-1615244)
chr3 (207-262)||(31195195-31195250)
chr3 (207-262)||(52773063-52773118)
chr3 (3-43)||(25904155-25904195)
chr3 (207-266)||(1615032-1615090)
chr3 (7-38)||(45207752-45207783)
chr3 (3-38)||(45674320-45674355)
chr3 (37-72)||(49872976-49873011)
chr3 (37-68)||(51549582-51549613)
chr3 (209-259)||(8836235-8836285)
chr3 (228-262)||(17479396-17479430)
chr3 (3-41)||(19961072-19961110)
chr3 (3-41)||(29651990-29652028)
chr3 (3-41)||(30744849-30744887)
chr3 (37-71)||(46597535-46597569)
chr3 (3-41)||(52060518-52060556)
chr3 (3-40)||(8108433-8108470)
chr3 (1-38)||(27848895-27848932)
chr3 (3-40)||(43599568-43599605)
chr3 (3-39)||(3671627-3671663)
chr3 (37-69)||(6510213-6510245)
chr3 (3-39)||(30190322-30190358)
chr3 (3-39)||(38783688-38783724)
chr3 (3-39)||(43175733-43175769)
chr3 (3-39)||(45824132-45824168)
chr3 (207-259)||(53978162-53978214)
chr3 (209-257)||(55310170-55310218)
[»] scaffold0013 (1 HSPs)
scaffold0013 (207-262)||(248956-249011)
[»] chr7 (20 HSPs)
chr7 (207-262)||(16256553-16256608)
chr7 (39-79)||(44569107-44569147)
chr7 (3-39)||(47834398-47834434)
chr7 (209-262)||(18481653-18481706)
chr7 (37-76)||(1830803-1830842)
chr7 (37-76)||(21298272-21298311)
chr7 (3-41)||(45780896-45780934)
chr7 (3-40)||(9818082-9818119)
chr7 (3-40)||(10720007-10720044)
chr7 (3-40)||(24924418-24924455)
chr7 (3-40)||(45823205-45823242)
chr7 (3-39)||(1643752-1643788)
chr7 (3-39)||(10453154-10453190)
chr7 (37-77)||(17167813-17167853)
chr7 (3-39)||(22918172-22918208)
chr7 (3-39)||(23059069-23059105)
chr7 (37-69)||(29141184-29141216)
chr7 (37-69)||(35913311-35913343)
chr7 (209-265)||(38847307-38847363)
chr7 (3-39)||(46373249-46373285)
[»] chr6 (16 HSPs)
chr6 (207-262)||(26133476-26133531)
chr6 (37-79)||(24062421-24062463)
chr6 (37-68)||(31851757-31851788)
chr6 (37-68)||(31886055-31886086)
chr6 (37-67)||(7922317-7922347)
chr6 (3-40)||(10364718-10364755)
chr6 (209-266)||(14815029-14815086)
chr6 (209-262)||(28519707-28519760)
chr6 (37-66)||(30381567-30381596)
chr6 (37-69)||(56139-56171)
chr6 (3-39)||(2603642-2603678)
chr6 (3-39)||(4657822-4657858)
chr6 (3-39)||(6835711-6835747)
chr6 (3-39)||(8201459-8201495)
chr6 (3-39)||(15497840-15497876)
chr6 (37-73)||(24387788-24387824)
[»] chr1 (30 HSPs)
chr1 (3-41)||(46160335-46160373)
chr1 (37-79)||(8928803-8928845)
chr1 (37-70)||(28410911-28410944)
chr1 (37-73)||(22604689-22604725)
chr1 (3-39)||(26834827-26834863)
chr1 (3-39)||(42709675-42709711)
chr1 (3-42)||(24589494-24589533)
chr1 (37-71)||(2472386-2472420)
chr1 (3-41)||(6920976-6921014)
chr1 (37-67)||(35034322-35034352)
chr1 (3-41)||(38238863-38238901)
chr1 (37-67)||(42736848-42736878)
chr1 (37-71)||(43635831-43635865)
chr1 (3-41)||(49251811-49251849)
chr1 (3-41)||(50942616-50942654)
chr1 (209-266)||(2359788-2359845)
chr1 (3-40)||(3552806-3552843)
chr1 (3-40)||(16436053-16436090)
chr1 (1-38)||(32557932-32557969)
chr1 (37-69)||(9439429-9439461)
chr1 (3-39)||(16010915-16010951)
chr1 (3-39)||(18127333-18127369)
chr1 (6-38)||(22172678-22172710)
chr1 (3-39)||(24583828-24583864)
chr1 (37-69)||(24987606-24987638)
chr1 (37-69)||(26095812-26095844)
chr1 (3-39)||(31925313-31925349)
chr1 (37-69)||(32131930-32131962)
chr1 (3-39)||(41529108-41529144)
chr1 (207-259)||(49641085-49641137)
[»] chr2 (25 HSPs)
chr2 (37-77)||(18555834-18555874)
chr2 (37-76)||(3364318-3364357)
chr2 (3-39)||(44710081-44710117)
chr2 (37-76)||(16577374-16577413)
chr2 (3-41)||(325378-325416)
chr2 (3-41)||(3628631-3628669)
chr2 (37-71)||(34635702-34635736)
chr2 (3-41)||(36443510-36443548)
chr2 (210-259)||(13130806-13130855)
chr2 (37-66)||(18701552-18701581)
chr2 (37-66)||(19493277-19493306)
chr2 (1-41)||(3870788-3870828)
chr2 (3-35)||(5669253-5669285)
chr2 (3-39)||(19002904-19002940)
chr2 (37-69)||(19493475-19493507)
chr2 (37-69)||(20182262-20182294)
chr2 (3-39)||(22060978-22061014)
chr2 (37-69)||(22116153-22116185)
chr2 (3-39)||(24000371-24000407)
chr2 (3-39)||(31909824-31909860)
chr2 (37-69)||(38386186-38386218)
chr2 (37-69)||(38937535-38937567)
chr2 (3-39)||(39407775-39407811)
chr2 (3-39)||(39927737-39927773)
chr2 (3-39)||(40833467-40833503)
[»] scaffold0014 (1 HSPs)
scaffold0014 (207-262)||(95839-95894)
[»] chr4 (34 HSPs)
chr4 (3-38)||(3506010-3506045)
chr4 (207-262)||(13988023-13988078)
chr4 (209-263)||(23167449-23167503)
chr4 (3-39)||(52920830-52920866)
chr4 (3-38)||(29290357-29290392)
chr4 (37-68)||(51396158-51396189)
chr4 (37-67)||(21798592-21798622)
chr4 (209-259)||(35087429-35087479)
chr4 (209-266)||(5239571-5239628)
chr4 (3-40)||(10555342-10555379)
chr4 (209-266)||(10652968-10653025)
chr4 (209-266)||(10867113-10867170)
chr4 (3-40)||(20180365-20180402)
chr4 (6-39)||(36937197-36937230)
chr4 (37-70)||(41331766-41331799)
chr4 (3-40)||(42507782-42507819)
chr4 (3-40)||(43587663-43587700)
chr4 (37-70)||(47320983-47321016)
chr4 (3-39)||(2401219-2401255)
chr4 (3-39)||(4294175-4294211)
chr4 (37-69)||(11563544-11563576)
chr4 (207-259)||(18254022-18254074)
chr4 (3-39)||(23621637-23621673)
chr4 (37-73)||(24215768-24215804)
chr4 (3-39)||(29832789-29832825)
chr4 (3-39)||(30088844-30088880)
chr4 (3-39)||(31648580-31648616)
chr4 (3-39)||(34016766-34016802)
chr4 (37-69)||(37273422-37273454)
chr4 (3-39)||(48380572-48380608)
chr4 (3-39)||(49236005-49236041)
chr4 (3-39)||(51817190-51817226)
chr4 (3-39)||(55968540-55968576)
chr4 (3-39)||(55984360-55984396)
[»] chr8 (23 HSPs)
chr8 (1-38)||(2031635-2031672)
chr8 (209-262)||(21029626-21029679)
chr8 (37-68)||(6952929-6952960)
chr8 (37-68)||(27198143-27198174)
chr8 (37-71)||(27987553-27987587)
chr8 (37-71)||(28044855-28044889)
chr8 (3-41)||(29938287-29938325)
chr8 (37-71)||(34985349-34985383)
chr8 (37-70)||(12330330-12330363)
chr8 (3-40)||(16872607-16872644)
chr8 (3-40)||(19715225-19715262)
chr8 (16-49)||(38451216-38451249)
chr8 (3-35)||(6796101-6796133)
chr8 (3-39)||(8378336-8378372)
chr8 (207-259)||(15193144-15193196)
chr8 (3-39)||(22578204-22578240)
chr8 (3-39)||(23597260-23597296)
chr8 (3-39)||(23606182-23606218)
chr8 (37-77)||(27164685-27164725)
chr8 (3-39)||(31873666-31873702)
chr8 (1-41)||(37504987-37505027)
chr8 (3-39)||(38896705-38896741)
chr8 (3-39)||(42373253-42373289)
[»] chr5 (19 HSPs)
chr5 (209-262)||(42139696-42139749)
chr5 (37-73)||(11439824-11439860)
chr5 (3-39)||(14153743-14153779)
chr5 (37-68)||(31861490-31861521)
chr5 (3-41)||(12360784-12360822)
chr5 (37-71)||(22551518-22551552)
chr5 (209-259)||(26472138-26472188)
chr5 (3-41)||(34163119-34163157)
chr5 (37-67)||(38313170-38313200)
chr5 (209-266)||(26466806-26466863)
chr5 (3-40)||(29619464-29619501)
chr5 (37-69)||(10976774-10976806)
chr5 (37-69)||(15061850-15061882)
chr5 (37-69)||(15615101-15615133)
chr5 (40-68)||(32144922-32144950)
chr5 (3-39)||(34382068-34382104)
chr5 (37-73)||(35798710-35798746)
chr5 (3-39)||(35869928-35869964)
chr5 (3-39)||(42940763-42940799)
[»] scaffold0246 (1 HSPs)
scaffold0246 (37-69)||(15870-15902)
[»] scaffold0769 (1 HSPs)
scaffold0769 (37-71)||(4178-4212)
[»] scaffold0450 (1 HSPs)
scaffold0450 (37-71)||(7855-7889)
[»] scaffold0308 (1 HSPs)
scaffold0308 (5-39)||(20666-20700)
[»] scaffold0475 (1 HSPs)
scaffold0475 (3-39)||(5118-5154)
[»] scaffold0164 (1 HSPs)
scaffold0164 (207-259)||(27158-27210)


Alignment Details
Target: chr3 (Bit Score: 165; Significance: 3e-88; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 68 - 277
Target Start/End: Complemental strand, 1627509 - 1627299
Alignment:
Q  68 taaattaaaatacgaagtcaccaattttgtacaaaaattggttcttatgatagaaaatcaatattattgtaaagttaaaaccgtaaaaattgacaattgt 167  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||    
T  1627509 taaattaaaatacgaagtcaccaattttgtaaaaaaattggttcttatgatagaaaatcaatattattgtaaagttaaaat-gtaaaaattgacaatggt 1627411  T
Q  168 ccag--ttttctatgcttgaattatattatgctaaaggaccagttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaacacatttt 265  Q
    ||||  |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||    
T  1627410 ccagagttttctatgcttgaattatattctgctaaaggaccagttgtgttgagactccccagcaaaatggaagagtagaaaaagagcatcaacacatttt 1627311  T
Q  266 atttcacaggtt 277  Q
    ||||||||||||    
T  1627310 atttcacaggtt 1627299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 68 - 266
Target Start/End: Complemental strand, 1610376 - 1610164
Alignment:
Q  68 taaattaaaatacgaagtcaccaattttgtacaaaaattggttcttatgatagaaaatcaatattattgtaaagttaaaaccgtaaaaattgacaattgt 167  Q
    |||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||  |||| |||||| ||| ||    
T  1610376 taaattaaaatatgaagtcgccaattttgt-caaaaattggttcttatgatagaaaatcaatattattttaaagttaaaattgtaagaattgataatggt 1610278  T
Q  168 c--cagttttctatgcttgaattatattatgctaaagg-------------accagttgtgttgagactctccagcaaaatggaagagtagaaagaaagc 252  Q
    |   ||||||||||| |||||||||||| |||||||||             | ||||||||||||||||| || ||||||||| ||||||||||  ||||    
T  1610277 cttgagttttctatgattgaattatattctgctaaagggatagaacatcaaatcagttgtgttgagactccccggcaaaatgggagagtagaaacgaagc 1610178  T
Q  253 atcaacacatttta 266  Q
    ||||||||||||||    
T  1610177 atcaacacatttta 1610164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 68 - 193
Target Start/End: Complemental strand, 1615244 - 1615118
Alignment:
Q  68 taaattaaaatacgaagtcaccaattttgtacaaaaattggttcttatgatagaaaatcaatattattgtaaagttaaaaccgtaaaaattgacaattgt 167  Q
    ||||| |||||| ||| |||||||||| ||||||||||   ||||||||||||||||||||||||||||  |||||||||| | || || ||||||| ||    
T  1615244 taaatcaaaatatgaa-tcaccaatttcgtacaaaaatacattcttatgatagaaaatcaatattattggcaagttaaaactgcaagaactgacaatggt 1615146  T
Q  168 cc--agttttctatgcttgaattatatt 193  Q
     |  ||||||||||||||||||| ||||    
T  1615145 actgagttttctatgcttgaattttatt 1615118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 262
Target Start/End: Complemental strand, 31195250 - 31195195
Alignment:
Q  207 agttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaacacat 262  Q
    |||||||||||||||| ||| |||||||| |||||||||||||| |||||||||||    
T  31195250 agttgtgttgagactccccaacaaaatgggagagtagaaagaaaacatcaacacat 31195195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 262
Target Start/End: Original strand, 52773063 - 52773118
Alignment:
Q  207 agttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaacacat 262  Q
    |||||||||||||||| ||| |||||||| |||||||||||||| |||||||||||    
T  52773063 agttgtgttgagactccccaacaaaatgggagagtagaaagaaaacatcaacacat 52773118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 25904155 - 25904195
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtatatta 43  Q
    |||||||||||||||||||||| || |||||||||||||||    
T  25904155 ttctaaagtgacatacaatttgggacggagggagtatatta 25904195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 266
Target Start/End: Complemental strand, 1615090 - 1615032
Alignment:
Q  207 agttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaacacatttta 266  Q
    ||||||| | |||||| ||| |||||||| ||||||||||||||||||||| ||||||||    
T  1615090 agttgtgataagactc-ccaacaaaatgggagagtagaaagaaagcatcaatacatttta 1615032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 38
Target Start/End: Original strand, 45207752 - 45207783
Alignment:
Q  7 aaagtgacatacaatttgagatggagggagta 38  Q
    ||||||||||||||||||||||||||||||||    
T  45207752 aaagtgacatacaatttgagatggagggagta 45207783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 38
Target Start/End: Original strand, 45674320 - 45674355
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagta 38  Q
    |||||||||||||||||||||| |||||||||||||    
T  45674320 ttctaaagtgacatacaatttgggatggagggagta 45674355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 72
Target Start/End: Original strand, 49872976 - 49873011
Alignment:
Q  37 tatattacaggggataaagacctattaaccctaaat 72  Q
    ||||||||||||| ||||||||||||||||||||||    
T  49872976 tatattacagggggtaaagacctattaaccctaaat 49873011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 68
Target Start/End: Original strand, 51549582 - 51549613
Alignment:
Q  37 tatattacaggggataaagacctattaaccct 68  Q
    ||||||||||||||||||||||||||||||||    
T  51549582 tatattacaggggataaagacctattaaccct 51549613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 259
Target Start/End: Original strand, 8836235 - 8836285
Alignment:
Q  209 ttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaaca 259  Q
    ||||||||| |||| ||| |||||||| ||||| |||||||||||||||||    
T  8836235 ttgtgttgaaactccccaacaaaatggtagagttgaaagaaagcatcaaca 8836285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 262
Target Start/End: Complemental strand, 17479430 - 17479396
Alignment:
Q  228 caaaatggaagagtagaaagaaagcatcaacacat 262  Q
    |||||||| ||||||||||||||||||||||||||    
T  17479430 caaaatgggagagtagaaagaaagcatcaacacat 17479396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 19961072 - 19961110
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtatat 41  Q
    |||||||||||||||||||||| || |||||||||||||    
T  19961072 ttctaaagtgacatacaatttgggacggagggagtatat 19961110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 29652028 - 29651990
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtatat 41  Q
    |||||||||||||||||||||| || |||||||||||||    
T  29652028 ttctaaagtgacatacaatttgggacggagggagtatat 29651990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 30744887 - 30744849
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtatat 41  Q
    ||||||||||||||||||||||||| ||||| |||||||    
T  30744887 ttctaaagtgacatacaatttgagacggaggaagtatat 30744849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 71
Target Start/End: Original strand, 46597535 - 46597569
Alignment:
Q  37 tatattacaggggataaagacctattaaccctaaa 71  Q
    ||||||||||||| |||||||||||||||||||||    
T  46597535 tatattacagggggtaaagacctattaaccctaaa 46597569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 52060518 - 52060556
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtatat 41  Q
    |||||||||||||||||||||| || |||||||||||||    
T  52060518 ttctaaagtgacatacaatttgggacggagggagtatat 52060556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 8108470 - 8108433
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtata 40  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  8108470 ttctaaagtgacatacattttgggatggagggagtata 8108433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 27848895 - 27848932
Alignment:
Q  1 tattctaaagtgacatacaatttgagatggagggagta 38  Q
    |||||||||||||||||||||||| || ||||||||||    
T  27848895 tattctaaagtgacatacaatttgggacggagggagta 27848932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 43599605 - 43599568
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtata 40  Q
    |||||||||||||||||||||| || ||||||||||||    
T  43599605 ttctaaagtgacatacaatttgggacggagggagtata 43599568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 3671627 - 3671663
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtat 39  Q
    |||||||||||||||||||||| || |||||||||||    
T  3671627 ttctaaagtgacatacaatttgggacggagggagtat 3671663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 69
Target Start/End: Complemental strand, 6510245 - 6510213
Alignment:
Q  37 tatattacaggggataaagacctattaacccta 69  Q
    ||||||||||||| |||||||||||||||||||    
T  6510245 tatattacagggggtaaagacctattaacccta 6510213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 30190358 - 30190322
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtat 39  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  30190358 ttctaaagtgacatacaatttgagacggatggagtat 30190322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 38783688 - 38783724
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtat 39  Q
    |||||||||||||||||||||| || |||||||||||    
T  38783688 ttctaaagtgacatacaatttgggacggagggagtat 38783724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 43175769 - 43175733
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtat 39  Q
    |||||||||||||||||||||| || |||||||||||    
T  43175769 ttctaaagtgacatacaatttgggacggagggagtat 43175733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 45824132 - 45824168
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtat 39  Q
    |||||||||||||||||||||| || |||||||||||    
T  45824132 ttctaaagtgacatacaatttgggacggagggagtat 45824168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 259
Target Start/End: Original strand, 53978162 - 53978214
Alignment:
Q  207 agttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaaca 259  Q
    ||||||||||| |||| ||| |||||||| ||||| ||||| |||||||||||    
T  53978162 agttgtgttgaaactccccaacaaaatgggagagttgaaaggaagcatcaaca 53978214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 257
Target Start/End: Original strand, 55310170 - 55310218
Alignment:
Q  209 ttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaa 257  Q
    ||||||||| |||| ||| |||||||| ||||| |||||||||||||||    
T  55310170 ttgtgttgaaactccccaacaaaatggtagagttgaaagaaagcatcaa 55310218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 262
Target Start/End: Complemental strand, 249011 - 248956
Alignment:
Q  207 agttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaacacat 262  Q
    |||||||||||||||| ||| |||||||| |||||||||||||| |||||||||||    
T  249011 agttgtgttgagactccccaacaaaatgggagagtagaaagaaaacatcaacacat 248956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 262
Target Start/End: Original strand, 16256553 - 16256608
Alignment:
Q  207 agttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaacacat 262  Q
    |||||||||||||||| ||| |||||||| |||||||||||||| |||||||||||    
T  16256553 agttgtgttgagactccccaacaaaatgggagagtagaaagaaaacatcaacacat 16256608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 44569107 - 44569147
Alignment:
Q  39 tattacaggggataaagacctattaaccctaaattaaaata 79  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  44569107 tattacaggggataaagacctattaaccctaaatttaaata 44569147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 47834398 - 47834434
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtat 39  Q
    |||||||||||||||||||||||||||||||||||||    
T  47834398 ttctaaagtgacatacaatttgagatggagggagtat 47834434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 262
Target Start/End: Complemental strand, 18481706 - 18481653
Alignment:
Q  209 ttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaacacat 262  Q
    ||||||||| || | ||| |||||||||||||| ||||||||||||||||||||    
T  18481706 ttgtgttgaaaccccccaacaaaatggaagagtggaaagaaagcatcaacacat 18481653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 76
Target Start/End: Complemental strand, 1830842 - 1830803
Alignment:
Q  37 tatattacaggggataaagacctattaaccctaaattaaa 76  Q
    ||||||||||||| ||||| ||||||||||||||||||||    
T  1830842 tatattacagggggtaaagccctattaaccctaaattaaa 1830803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 76
Target Start/End: Original strand, 21298272 - 21298311
Alignment:
Q  37 tatattacaggggataaagacctattaaccctaaattaaa 76  Q
    ||||||||| |||||||||||||||||||||| |||||||    
T  21298272 tatattacaagggataaagacctattaacccttaattaaa 21298311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 45780896 - 45780934
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtatat 41  Q
    |||||||||||||||||||||| || |||||||||||||    
T  45780896 ttctaaagtgacatacaatttgggacggagggagtatat 45780934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 9818119 - 9818082
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtata 40  Q
    |||||||||||||||||||||| || ||||||||||||    
T  9818119 ttctaaagtgacatacaatttgggacggagggagtata 9818082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 10720044 - 10720007
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtata 40  Q
    |||||||||||||||||||||| || ||||||||||||    
T  10720044 ttctaaagtgacatacaatttgggacggagggagtata 10720007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 24924418 - 24924455
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtata 40  Q
    |||||||||||||||||||||| || ||||||||||||    
T  24924418 ttctaaagtgacatacaatttgggacggagggagtata 24924455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 45823205 - 45823242
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtata 40  Q
    |||||||||||||||||||||| || ||||||||||||    
T  45823205 ttctaaagtgacatacaatttgggacggagggagtata 45823242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 1643752 - 1643788
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtat 39  Q
    |||||||||||||||||||||| || |||||||||||    
T  1643752 ttctaaagtgacatacaatttgggacggagggagtat 1643788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 10453154 - 10453190
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtat 39  Q
    |||||||||||||||||||||| || |||||||||||    
T  10453154 ttctaaagtgacatacaatttgggacggagggagtat 10453190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 17167813 - 17167853
Alignment:
Q  37 tatattacaggggataaagacctattaaccctaaattaaaa 77  Q
    |||||||||||||||||||  |||||||||||||| |||||    
T  17167813 tatattacaggggataaagcactattaaccctaaaataaaa 17167853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 22918208 - 22918172
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtat 39  Q
    |||||||||||||||||||||| || |||||||||||    
T  22918208 ttctaaagtgacatacaatttgggacggagggagtat 22918172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 23059105 - 23059069
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtat 39  Q
    |||||||||||||||||||||| || |||||||||||    
T  23059105 ttctaaagtgacatacaatttgggacggagggagtat 23059069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 69
Target Start/End: Original strand, 29141184 - 29141216
Alignment:
Q  37 tatattacaggggataaagacctattaacccta 69  Q
    |||||||||||||||||||||||||||| ||||    
T  29141184 tatattacaggggataaagacctattaatccta 29141216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 69
Target Start/End: Original strand, 35913311 - 35913343
Alignment:
Q  37 tatattacaggggataaagacctattaacccta 69  Q
    ||||||||||||| |||||||||||||||||||    
T  35913311 tatattacagggggtaaagacctattaacccta 35913343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 265
Target Start/End: Complemental strand, 38847363 - 38847307
Alignment:
Q  209 ttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaacacatttt 265  Q
    |||||||||||| |  || |||||||| ||||| |||||||| ||||||||||||||    
T  38847363 ttgtgttgagacacctcaacaaaatgggagagtggaaagaaaacatcaacacatttt 38847307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 46373249 - 46373285
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtat 39  Q
    |||||||||||||||||||||| || |||||||||||    
T  46373249 ttctaaagtgacatacaatttgggacggagggagtat 46373285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 262
Target Start/End: Original strand, 26133476 - 26133531
Alignment:
Q  207 agttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaacacat 262  Q
    |||||||||||||||| ||| |||||||| |||||||||||||| |||||||||||    
T  26133476 agttgtgttgagactccccaacaaaatgggagagtagaaagaaaacatcaacacat 26133531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 79
Target Start/End: Original strand, 24062421 - 24062463
Alignment:
Q  37 tatattacaggggataaagacctattaaccctaaattaaaata 79  Q
    ||||||||| ||||||||||||||||||||||||||| |||||    
T  24062421 tatattacatgggataaagacctattaaccctaaatttaaata 24062463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 68
Target Start/End: Complemental strand, 31851788 - 31851757
Alignment:
Q  37 tatattacaggggataaagacctattaaccct 68  Q
    ||||||||||||||||||||||||||||||||    
T  31851788 tatattacaggggataaagacctattaaccct 31851757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 68
Target Start/End: Original strand, 31886055 - 31886086
Alignment:
Q  37 tatattacaggggataaagacctattaaccct 68  Q
    ||||||||||||||||||||||||||||||||    
T  31886055 tatattacaggggataaagacctattaaccct 31886086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 67
Target Start/End: Complemental strand, 7922347 - 7922317
Alignment:
Q  37 tatattacaggggataaagacctattaaccc 67  Q
    |||||||||||||||||||||||||||||||    
T  7922347 tatattacaggggataaagacctattaaccc 7922317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 10364718 - 10364755
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtata 40  Q
    |||||||||||||||||||||| || ||||||||||||    
T  10364718 ttctaaagtgacatacaatttgggacggagggagtata 10364755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 266
Target Start/End: Original strand, 14815029 - 14815086
Alignment:
Q  209 ttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaacacatttta 266  Q
    |||||| || |||| ||| |||||||| ||||| |||||||| |||||||||||||||    
T  14815029 ttgtgtagaaactccccaacaaaatggtagagttgaaagaaaacatcaacacatttta 14815086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 262
Target Start/End: Complemental strand, 28519760 - 28519707
Alignment:
Q  209 ttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaacacat 262  Q
    ||||||||| || | ||| |||||||| ||||| ||||||||||||||||||||    
T  28519760 ttgtgttgaaaccccccaacaaaatgggagagtggaaagaaagcatcaacacat 28519707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Complemental strand, 30381596 - 30381567
Alignment:
Q  37 tatattacaggggataaagacctattaacc 66  Q
    ||||||||||||||||||||||||||||||    
T  30381596 tatattacaggggataaagacctattaacc 30381567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 69
Target Start/End: Original strand, 56139 - 56171
Alignment:
Q  37 tatattacaggggataaagacctattaacccta 69  Q
    ||||||||||||| |||||||||||||||||||    
T  56139 tatattacagggggtaaagacctattaacccta 56171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 2603642 - 2603678
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtat 39  Q
    |||||||||||||||||||||| || |||||||||||    
T  2603642 ttctaaagtgacatacaatttgggacggagggagtat 2603678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 4657858 - 4657822
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtat 39  Q
    ||||||||||| |||||||||| ||||||||||||||    
T  4657858 ttctaaagtgatatacaatttgggatggagggagtat 4657822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 6835747 - 6835711
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtat 39  Q
    |||||||||||||||||||||| || |||||||||||    
T  6835747 ttctaaagtgacatacaatttgggacggagggagtat 6835711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 8201495 - 8201459
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtat 39  Q
    |||||||||||||||||||||| || |||||||||||    
T  8201495 ttctaaagtgacatacaatttgggacggagggagtat 8201459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 15497876 - 15497840
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtat 39  Q
    |||||||||||||||||||||| || |||||||||||    
T  15497876 ttctaaagtgacatacaatttgggacggagggagtat 15497840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 24387788 - 24387824
Alignment:
Q  37 tatattacaggggataaagacctattaaccctaaatt 73  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  24387788 tatattacagggggtaaagacctattaacccaaaatt 24387824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 46160373 - 46160335
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtatat 41  Q
    |||||||||||||||||||||||||||||||||||||||    
T  46160373 ttctaaagtgacatacaatttgagatggagggagtatat 46160335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 79
Target Start/End: Complemental strand, 8928845 - 8928803
Alignment:
Q  37 tatattacaggggataaagacctattaaccctaaattaaaata 79  Q
    ||||||||||||| ||||||||||||||||||||| |||||||    
T  8928845 tatattacagggggtaaagacctattaaccctaaaataaaata 8928803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 70
Target Start/End: Complemental strand, 28410944 - 28410911
Alignment:
Q  37 tatattacaggggataaagacctattaaccctaa 70  Q
    ||||||||||||||||||||||||||||||||||    
T  28410944 tatattacaggggataaagacctattaaccctaa 28410911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 22604689 - 22604725
Alignment:
Q  37 tatattacaggggataaagacctattaaccctaaatt 73  Q
    ||||||||||||| |||||||||||||||||||||||    
T  22604689 tatattacaggggttaaagacctattaaccctaaatt 22604725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 26834863 - 26834827
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtat 39  Q
    |||||||||||||||||||||| ||||||||||||||    
T  26834863 ttctaaagtgacatacaatttgggatggagggagtat 26834827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 42709711 - 42709675
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtat 39  Q
    |||||||||||||||||||||| ||||||||||||||    
T  42709711 ttctaaagtgacatacaatttgggatggagggagtat 42709675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 24589533 - 24589494
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtatatt 42  Q
    |||||||||||||||||||||| || ||||||||||||||    
T  24589533 ttctaaagtgacatacaatttgggacggagggagtatatt 24589494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 71
Target Start/End: Complemental strand, 2472420 - 2472386
Alignment:
Q  37 tatattacaggggataaagacctattaaccctaaa 71  Q
    ||||||||||||| |||||||||||||||||||||    
T  2472420 tatattacaggggttaaagacctattaaccctaaa 2472386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 6920976 - 6921014
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtatat 41  Q
    |||||||||||||||||||||| || |||||||||||||    
T  6920976 ttctaaagtgacatacaatttgggacggagggagtatat 6921014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 67
Target Start/End: Original strand, 35034322 - 35034352
Alignment:
Q  37 tatattacaggggataaagacctattaaccc 67  Q
    |||||||||||||||||||||||||||||||    
T  35034322 tatattacaggggataaagacctattaaccc 35034352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 38238901 - 38238863
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtatat 41  Q
    |||||||||||||||||||||| || |||||||||||||    
T  38238901 ttctaaagtgacatacaatttgggacggagggagtatat 38238863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 67
Target Start/End: Original strand, 42736848 - 42736878
Alignment:
Q  37 tatattacaggggataaagacctattaaccc 67  Q
    |||||||||||||||||||||||||||||||    
T  42736848 tatattacaggggataaagacctattaaccc 42736878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 71
Target Start/End: Complemental strand, 43635865 - 43635831
Alignment:
Q  37 tatattacaggggataaagacctattaaccctaaa 71  Q
    ||||||||||||| |||||||||||||||||||||    
T  43635865 tatattacagggggtaaagacctattaaccctaaa 43635831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 49251811 - 49251849
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtatat 41  Q
    |||||||||||||||||||||| || |||||||||||||    
T  49251811 ttctaaagtgacatacaatttgggacggagggagtatat 49251849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 50942654 - 50942616
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtatat 41  Q
    |||||||||||||||||||||| || |||||||||||||    
T  50942654 ttctaaagtgacatacaatttgggacggagggagtatat 50942616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 266
Target Start/End: Original strand, 2359788 - 2359845
Alignment:
Q  209 ttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaacacatttta 266  Q
    |||||| || |||| ||| |||||||| ||||| |||||||| |||||||||||||||    
T  2359788 ttgtgtagaaactccccaacaaaatggtagagttgaaagaaaacatcaacacatttta 2359845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 3552806 - 3552843
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtata 40  Q
    |||||||||||||||||||||| || ||||||||||||    
T  3552806 ttctaaagtgacatacaatttgggacggagggagtata 3552843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 16436090 - 16436053
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtata 40  Q
    |||||||||||||||||||||| || ||||||||||||    
T  16436090 ttctaaagtgacatacaatttgggacggagggagtata 16436053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 32557969 - 32557932
Alignment:
Q  1 tattctaaagtgacatacaatttgagatggagggagta 38  Q
    |||||||||||||||||||||||| || ||||||||||    
T  32557969 tattctaaagtgacatacaatttgggacggagggagta 32557932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 69
Target Start/End: Original strand, 9439429 - 9439461
Alignment:
Q  37 tatattacaggggataaagacctattaacccta 69  Q
    ||||||||||||| |||||||||||||||||||    
T  9439429 tatattacagggggtaaagacctattaacccta 9439461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 16010951 - 16010915
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtat 39  Q
    |||||||||||||||||||||| || |||||||||||    
T  16010951 ttctaaagtgacatacaatttgggacggagggagtat 16010915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 18127369 - 18127333
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtat 39  Q
    |||||||||||||||||||||| || |||||||||||    
T  18127369 ttctaaagtgacatacaatttgggacggagggagtat 18127333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 22172678 - 22172710
Alignment:
Q  6 taaagtgacatacaatttgagatggagggagta 38  Q
    ||||||||||||||||||| |||||||||||||    
T  22172678 taaagtgacatacaatttgggatggagggagta 22172710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 24583864 - 24583828
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtat 39  Q
    |||||||||||||||||||||| || |||||||||||    
T  24583864 ttctaaagtgacatacaatttgggacggagggagtat 24583828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 69
Target Start/End: Complemental strand, 24987638 - 24987606
Alignment:
Q  37 tatattacaggggataaagacctattaacccta 69  Q
    ||||||||||||| |||||||||||||||||||    
T  24987638 tatattacagggggtaaagacctattaacccta 24987606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 69
Target Start/End: Complemental strand, 26095844 - 26095812
Alignment:
Q  37 tatattacaggggataaagacctattaacccta 69  Q
    ||||||||||||| |||||||||||||||||||    
T  26095844 tatattacagggggtaaagacctattaacccta 26095812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 31925313 - 31925349
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtat 39  Q
    ||||||||||||||||||||||| | |||||||||||    
T  31925313 ttctaaagtgacatacaatttgaaacggagggagtat 31925349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 69
Target Start/End: Original strand, 32131930 - 32131962
Alignment:
Q  37 tatattacaggggataaagacctattaacccta 69  Q
    ||||||||||||| |||||||||||||||||||    
T  32131930 tatattacagggggtaaagacctattaacccta 32131962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 41529144 - 41529108
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtat 39  Q
    |||||||||||||||||||||| || |||||||||||    
T  41529144 ttctaaagtgacatacaatttgggacggagggagtat 41529108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 259
Target Start/End: Complemental strand, 49641137 - 49641085
Alignment:
Q  207 agttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaaca 259  Q
    ||||||||||| |||| ||| |||||||| ||||| ||||| |||||||||||    
T  49641137 agttgtgttgaaactccccaacaaaatgggagagttgaaaggaagcatcaaca 49641085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 18555834 - 18555874
Alignment:
Q  37 tatattacaggggataaagacctattaaccctaaattaaaa 77  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  18555834 tatattacaggggataaagacctattaaccctaaaataaaa 18555874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 76
Target Start/End: Complemental strand, 3364357 - 3364318
Alignment:
Q  37 tatattacaggggataaagacctattaaccctaaattaaa 76  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  3364357 tatattacaggggataaagacctattaaccctagattaaa 3364318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 44710081 - 44710117
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtat 39  Q
    |||||||||||||||||||||| ||||||||||||||    
T  44710081 ttctaaagtgacatacaatttgggatggagggagtat 44710117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 76
Target Start/End: Original strand, 16577374 - 16577413
Alignment:
Q  37 tatattacaggggataaagacctattaaccctaaattaaa 76  Q
    ||||||||||||| ||||||||||||||||||||| ||||    
T  16577374 tatattacagggggtaaagacctattaaccctaaaataaa 16577413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 325378 - 325416
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtatat 41  Q
    |||||||||||||||||||||| || |||||||||||||    
T  325378 ttctaaagtgacatacaatttgggacggagggagtatat 325416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 3628631 - 3628669
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtatat 41  Q
    |||||||||||||||||||||| || |||||||||||||    
T  3628631 ttctaaagtgacatacaatttgggacggagggagtatat 3628669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 71
Target Start/End: Complemental strand, 34635736 - 34635702
Alignment:
Q  37 tatattacaggggataaagacctattaaccctaaa 71  Q
    ||||||||||||| |||||||||||||||||||||    
T  34635736 tatattacagggggtaaagacctattaaccctaaa 34635702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 36443548 - 36443510
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtatat 41  Q
    |||||||||||||||||||||| || |||||||||||||    
T  36443548 ttctaaagtgacatacaatttgggacggagggagtatat 36443510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 259
Target Start/End: Original strand, 13130806 - 13130855
Alignment:
Q  210 tgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaaca 259  Q
    |||||||| |||| ||| |||||||| ||||| |||||||||||||||||    
T  13130806 tgtgttgaaactccccaacaaaatggtagagttgaaagaaagcatcaaca 13130855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Complemental strand, 18701581 - 18701552
Alignment:
Q  37 tatattacaggggataaagacctattaacc 66  Q
    ||||||||||||||||||||||||||||||    
T  18701581 tatattacaggggataaagacctattaacc 18701552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Complemental strand, 19493306 - 19493277
Alignment:
Q  37 tatattacaggggataaagacctattaacc 66  Q
    ||||||||||||||||||||||||||||||    
T  19493306 tatattacaggggataaagacctattaacc 19493277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 3870828 - 3870788
Alignment:
Q  1 tattctaaagtgacatacaatttgagatggagggagtatat 41  Q
    |||| ||||| |||||||||||||||| |||||||||||||    
T  3870828 tattgtaaagcgacatacaatttgagacggagggagtatat 3870788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 5669253 - 5669285
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggaggga 35  Q
    ||||||||||||||||||||||||| |||||||    
T  5669253 ttctaaagtgacatacaatttgagacggaggga 5669285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 19002940 - 19002904
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtat 39  Q
    |||||||||||||||||||||| || |||||||||||    
T  19002940 ttctaaagtgacatacaatttgggacggagggagtat 19002904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 69
Target Start/End: Original strand, 19493475 - 19493507
Alignment:
Q  37 tatattacaggggataaagacctattaacccta 69  Q
    ||||||||||||| |||||||||||||||||||    
T  19493475 tatattacagggggtaaagacctattaacccta 19493507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 69
Target Start/End: Complemental strand, 20182294 - 20182262
Alignment:
Q  37 tatattacaggggataaagacctattaacccta 69  Q
    |||||||||||||||||| ||||||||||||||    
T  20182294 tatattacaggggataaaaacctattaacccta 20182262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 22061014 - 22060978
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtat 39  Q
    |||||||||||||||||||||| || |||||||||||    
T  22061014 ttctaaagtgacatacaatttgggacggagggagtat 22060978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 69
Target Start/End: Complemental strand, 22116185 - 22116153
Alignment:
Q  37 tatattacaggggataaagacctattaacccta 69  Q
    ||||||||||||| |||||||||||||||||||    
T  22116185 tatattacagggggtaaagacctattaacccta 22116153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 24000371 - 24000407
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtat 39  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  24000371 ttctaaagtgacatacaatttgagacggatggagtat 24000407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 31909824 - 31909860
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtat 39  Q
    |||||||||||||||||||||| || |||||||||||    
T  31909824 ttctaaagtgacatacaatttgggacggagggagtat 31909860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 69
Target Start/End: Original strand, 38386186 - 38386218
Alignment:
Q  37 tatattacaggggataaagacctattaacccta 69  Q
    ||||||||||||||||||||| |||||||||||    
T  38386186 tatattacaggggataaagacatattaacccta 38386218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 69
Target Start/End: Original strand, 38937535 - 38937567
Alignment:
Q  37 tatattacaggggataaagacctattaacccta 69  Q
    ||||||||||||| |||||||||||||||||||    
T  38937535 tatattacagggggtaaagacctattaacccta 38937567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 39407811 - 39407775
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtat 39  Q
    |||||||||||||||||||||| || |||||||||||    
T  39407811 ttctaaagtgacatacaatttgggacggagggagtat 39407775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 39927737 - 39927773
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtat 39  Q
    |||||||||||||||||||||| || |||||||||||    
T  39927737 ttctaaagtgacatacaatttgggacggagggagtat 39927773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 40833503 - 40833467
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtat 39  Q
    |||||||||||||||||||||| || |||||||||||    
T  40833503 ttctaaagtgacatacaatttgggacggagggagtat 40833467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 262
Target Start/End: Complemental strand, 95894 - 95839
Alignment:
Q  207 agttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaacacat 262  Q
    |||| ||||||||||| ||| |||||||| |||||||||||||| |||||||||||    
T  95894 agttatgttgagactccccaacaaaatgggagagtagaaagaaaacatcaacacat 95839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 38
Target Start/End: Complemental strand, 3506045 - 3506010
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagta 38  Q
    ||||||||||||||||||||||||||||||||||||    
T  3506045 ttctaaagtgacatacaatttgagatggagggagta 3506010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 262
Target Start/End: Original strand, 13988023 - 13988078
Alignment:
Q  207 agttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaacacat 262  Q
    |||| ||||||||||| ||| |||||||| |||||||||||||| |||||||||||    
T  13988023 agttatgttgagactccccaacaaaatgggagagtagaaagaaaacatcaacacat 13988078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 263
Target Start/End: Complemental strand, 23167503 - 23167449
Alignment:
Q  209 ttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaacacatt 263  Q
    |||||||||||||| ||| |||||||| ||||| ||||||||||| |||||||||    
T  23167503 ttgtgttgagactccccaacaaaatgggagagttgaaagaaagcaccaacacatt 23167449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 52920830 - 52920866
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtat 39  Q
    |||||||||||||||||||||| ||||||||||||||    
T  52920830 ttctaaagtgacatacaatttgggatggagggagtat 52920866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 38
Target Start/End: Original strand, 29290357 - 29290392
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagta 38  Q
    ||||||||||||||||||||||||| ||||||||||    
T  29290357 ttctaaagtgacatacaatttgagacggagggagta 29290392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 68
Target Start/End: Complemental strand, 51396189 - 51396158
Alignment:
Q  37 tatattacaggggataaagacctattaaccct 68  Q
    ||||||||||||||||||||||||||||||||    
T  51396189 tatattacaggggataaagacctattaaccct 51396158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 67
Target Start/End: Original strand, 21798592 - 21798622
Alignment:
Q  37 tatattacaggggataaagacctattaaccc 67  Q
    |||||||||||||||||||||||||||||||    
T  21798592 tatattacaggggataaagacctattaaccc 21798622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 259
Target Start/End: Original strand, 35087429 - 35087479
Alignment:
Q  209 ttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaaca 259  Q
    ||||||||| |||| |||||||||||| |||||||| ||||| ||||||||    
T  35087429 ttgtgttgaaactccccagcaaaatgggagagtagagagaaaacatcaaca 35087479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 266
Target Start/End: Original strand, 5239571 - 5239628
Alignment:
Q  209 ttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaacacatttta 266  Q
    |||||| || |||| ||| |||||||| ||||| |||||||| |||||||||||||||    
T  5239571 ttgtgtagaaactccccaacaaaatggtagagttgaaagaaaacatcaacacatttta 5239628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 10555342 - 10555379
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtata 40  Q
    |||||||||||||||||||||| || ||||||||||||    
T  10555342 ttctaaagtgacatacaatttgggacggagggagtata 10555379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 266
Target Start/End: Original strand, 10652968 - 10653025
Alignment:
Q  209 ttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaacacatttta 266  Q
    |||||| || |||| ||| |||||||| ||||| |||||||| |||||||||||||||    
T  10652968 ttgtgtagaaactccccaacaaaatggtagagttgaaagaaaacatcaacacatttta 10653025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 266
Target Start/End: Original strand, 10867113 - 10867170
Alignment:
Q  209 ttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaacacatttta 266  Q
    |||||| || |||| ||| |||||||| ||||| |||||||| |||||||||||||||    
T  10867113 ttgtgtagaaactccccaacaaaatggtagagttgaaagaaaacatcaacacatttta 10867170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 20180402 - 20180365
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtata 40  Q
    ||||||||||||||||||||||||| ||| ||||||||    
T  20180402 ttctaaagtgacatacaatttgagacggaaggagtata 20180365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 36937230 - 36937197
Alignment:
Q  6 taaagtgacatacaatttgagatggagggagtat 39  Q
    |||||||||||||||||||||| |||||||||||    
T  36937230 taaagtgacatacaatttgagacggagggagtat 36937197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 70
Target Start/End: Complemental strand, 41331799 - 41331766
Alignment:
Q  37 tatattacaggggataaagacctattaaccctaa 70  Q
    |||||| |||||||||||||||||||||||||||    
T  41331799 tatattgcaggggataaagacctattaaccctaa 41331766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 42507782 - 42507819
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtata 40  Q
    |||||||||||||||||||||| || ||||||||||||    
T  42507782 ttctaaagtgacatacaatttgggacggagggagtata 42507819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 43587700 - 43587663
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtata 40  Q
    |||||||||||||||||||||| |||||| ||||||||    
T  43587700 ttctaaagtgacatacaatttgggatggaaggagtata 43587663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 70
Target Start/End: Complemental strand, 47321016 - 47320983
Alignment:
Q  37 tatattacaggggataaagacctattaaccctaa 70  Q
    ||||||||||||||||||||||||| ||||||||    
T  47321016 tatattacaggggataaagacctataaaccctaa 47320983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 2401255 - 2401219
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtat 39  Q
    |||||||||||||||||||||| || |||||||||||    
T  2401255 ttctaaagtgacatacaatttgggacggagggagtat 2401219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 4294175 - 4294211
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtat 39  Q
    |||||||||||||||||||||| || |||||||||||    
T  4294175 ttctaaagtgacatacaatttgggacggagggagtat 4294211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 69
Target Start/End: Original strand, 11563544 - 11563576
Alignment:
Q  37 tatattacaggggataaagacctattaacccta 69  Q
    ||||||||||||| |||||||||||||||||||    
T  11563544 tatattacagggggtaaagacctattaacccta 11563576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 259
Target Start/End: Original strand, 18254022 - 18254074
Alignment:
Q  207 agttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaaca 259  Q
    ||||||||||| |||| ||| |||||||| ||||| ||||| |||||||||||    
T  18254022 agttgtgttgaaactccccaacaaaatgggagagttgaaaggaagcatcaaca 18254074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 23621673 - 23621637
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtat 39  Q
    |||||||||||||||||||||| || |||||||||||    
T  23621673 ttctaaagtgacatacaatttgggacggagggagtat 23621637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 24215768 - 24215804
Alignment:
Q  37 tatattacaggggataaagacctattaaccctaaatt 73  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  24215768 tatattacagggggtaaagacctattaacccttaatt 24215804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 29832789 - 29832825
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtat 39  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  29832789 ttctaaagtgacatacaatttgggatggagagagtat 29832825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 30088844 - 30088880
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtat 39  Q
    |||||||||||||||||||||| || |||||||||||    
T  30088844 ttctaaagtgacatacaatttgggacggagggagtat 30088880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 31648580 - 31648616
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtat 39  Q
    |||||||||||||||||||||| || |||||||||||    
T  31648580 ttctaaagtgacatacaatttgggacggagggagtat 31648616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 34016802 - 34016766
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtat 39  Q
    |||||||||||||||||||||| || |||||||||||    
T  34016802 ttctaaagtgacatacaatttgggacggagggagtat 34016766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 69
Target Start/End: Original strand, 37273422 - 37273454
Alignment:
Q  37 tatattacaggggataaagacctattaacccta 69  Q
    ||||||||||||| |||||||||||||||||||    
T  37273422 tatattacagggggtaaagacctattaacccta 37273454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 48380608 - 48380572
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtat 39  Q
    |||||||||||||||||||||| || |||||||||||    
T  48380608 ttctaaagtgacatacaatttgggacggagggagtat 48380572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 49236005 - 49236041
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtat 39  Q
    |||||||||||||||||||||| || |||||||||||    
T  49236005 ttctaaagtgacatacaatttgggacggagggagtat 49236041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 51817190 - 51817226
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtat 39  Q
    |||||||||||||||||||||| || |||||||||||    
T  51817190 ttctaaagtgacatacaatttgggacggagggagtat 51817226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 55968576 - 55968540
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtat 39  Q
    |||||||||||||||||||||| || |||||||||||    
T  55968576 ttctaaagtgacatacaatttgggacggagggagtat 55968540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 55984360 - 55984396
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtat 39  Q
    |||||||||||||||||||||| || |||||||||||    
T  55984360 ttctaaagtgacatacaatttgggacggagggagtat 55984396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 2031635 - 2031672
Alignment:
Q  1 tattctaaagtgacatacaatttgagatggagggagta 38  Q
    |||||||||| |||||||||||||||||||||||||||    
T  2031635 tattctaaagcgacatacaatttgagatggagggagta 2031672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 262
Target Start/End: Complemental strand, 21029679 - 21029626
Alignment:
Q  209 ttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaacacat 262  Q
    ||||||||| || | ||| |||||||||||||| ||||||||||||||||||||    
T  21029679 ttgtgttgaaaccccccaacaaaatggaagagtggaaagaaagcatcaacacat 21029626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 68
Target Start/End: Original strand, 6952929 - 6952960
Alignment:
Q  37 tatattacaggggataaagacctattaaccct 68  Q
    ||||||||||||||||||||||||||||||||    
T  6952929 tatattacaggggataaagacctattaaccct 6952960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 68
Target Start/End: Complemental strand, 27198174 - 27198143
Alignment:
Q  37 tatattacaggggataaagacctattaaccct 68  Q
    ||||||||||||||||||||||||||||||||    
T  27198174 tatattacaggggataaagacctattaaccct 27198143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 71
Target Start/End: Original strand, 27987553 - 27987587
Alignment:
Q  37 tatattacaggggataaagacctattaaccctaaa 71  Q
    ||||||||||||| |||||||||||||||||||||    
T  27987553 tatattacagggggtaaagacctattaaccctaaa 27987587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 71
Target Start/End: Original strand, 28044855 - 28044889
Alignment:
Q  37 tatattacaggggataaagacctattaaccctaaa 71  Q
    ||||||||||||| |||||||||||||||||||||    
T  28044855 tatattacagggggtaaagacctattaaccctaaa 28044889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 29938325 - 29938287
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtatat 41  Q
    |||||||||||||||||||||| || |||||||||||||    
T  29938325 ttctaaagtgacatacaatttgggacggagggagtatat 29938287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 71
Target Start/End: Original strand, 34985349 - 34985383
Alignment:
Q  37 tatattacaggggataaagacctattaaccctaaa 71  Q
    ||||||||||||| |||||||||||||||||||||    
T  34985349 tatattacagggggtaaagacctattaaccctaaa 34985383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 70
Target Start/End: Complemental strand, 12330363 - 12330330
Alignment:
Q  37 tatattacaggggataaagacctattaaccctaa 70  Q
    ||||||||||||| ||||||||||||||||||||    
T  12330363 tatattacagggggtaaagacctattaaccctaa 12330330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 16872607 - 16872644
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtata 40  Q
    |||||||||||||||||||||| || ||||||||||||    
T  16872607 ttctaaagtgacatacaatttgggacggagggagtata 16872644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 19715262 - 19715225
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtata 40  Q
    |||||||||||||||||||||| || ||||||||||||    
T  19715262 ttctaaagtgacatacaatttgggacggagggagtata 19715225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 49
Target Start/End: Original strand, 38451216 - 38451249
Alignment:
Q  16 tacaatttgagatggagggagtatattacagggg 49  Q
    ||||||||| ||||||||||||||||||||||||    
T  38451216 tacaatttgggatggagggagtatattacagggg 38451249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 6796133 - 6796101
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggaggga 35  Q
    |||||||||||||||||||||| ||||||||||    
T  6796133 ttctaaagtgacatacaatttgggatggaggga 6796101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 8378336 - 8378372
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtat 39  Q
    |||||||||||||||||||||| || |||||||||||    
T  8378336 ttctaaagtgacatacaatttgggacggagggagtat 8378372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 259
Target Start/End: Original strand, 15193144 - 15193196
Alignment:
Q  207 agttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaaca 259  Q
    ||||||||||| |||| ||| |||||||| ||||| ||||| |||||||||||    
T  15193144 agttgtgttgaaactccccaacaaaatgggagagttgaaaggaagcatcaaca 15193196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 22578240 - 22578204
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtat 39  Q
    |||||||||||||||||||||| || |||||||||||    
T  22578240 ttctaaagtgacatacaatttgggacggagggagtat 22578204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 23597296 - 23597260
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtat 39  Q
    |||||||||||||||||||||| || |||||||||||    
T  23597296 ttctaaagtgacatacaatttgggacggagggagtat 23597260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 23606218 - 23606182
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtat 39  Q
    |||||||||||||||||||||| || |||||||||||    
T  23606218 ttctaaagtgacatacaatttgggacggagggagtat 23606182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 27164685 - 27164725
Alignment:
Q  37 tatattacaggggataaagacctattaaccctaaattaaaa 77  Q
    ||||||||||||| |||||||||||||||| | ||||||||    
T  27164685 tatattacagggggtaaagacctattaacctttaattaaaa 27164725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 31873666 - 31873702
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtat 39  Q
    |||||||||||||||||||||| || |||||||||||    
T  31873666 ttctaaagtgacatacaatttgggacggagggagtat 31873702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 37505027 - 37504987
Alignment:
Q  1 tattctaaagtgacatacaatttgagatggagggagtatat 41  Q
    |||| ||||||||||||||||||| || |||||||||||||    
T  37505027 tattataaagtgacatacaatttgggacggagggagtatat 37504987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 38896705 - 38896741
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtat 39  Q
    |||||||||||||||||||||| || |||||||||||    
T  38896705 ttctaaagtgacatacaatttgggacggagggagtat 38896741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 42373253 - 42373289
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtat 39  Q
    |||||||||||||||||||||| || |||||||||||    
T  42373253 ttctaaagtgacatacaatttgggacggagggagtat 42373289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 262
Target Start/End: Original strand, 42139696 - 42139749
Alignment:
Q  209 ttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaacacat 262  Q
    ||||||||| || | ||| |||||||||||||| ||||||||||||||||||||    
T  42139696 ttgtgttgaaaccccccaacaaaatggaagagtggaaagaaagcatcaacacat 42139749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 11439824 - 11439860
Alignment:
Q  37 tatattacaggggataaagacctattaaccctaaatt 73  Q
    ||||||||||| |||||||||||||||||||||||||    
T  11439824 tatattacaggagataaagacctattaaccctaaatt 11439860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 14153743 - 14153779
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtat 39  Q
    ||||||||||||||||||||||||| |||||||||||    
T  14153743 ttctaaagtgacatacaatttgagacggagggagtat 14153779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 68
Target Start/End: Complemental strand, 31861521 - 31861490
Alignment:
Q  37 tatattacaggggataaagacctattaaccct 68  Q
    ||||||||||||||||||||||||||||||||    
T  31861521 tatattacaggggataaagacctattaaccct 31861490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 12360822 - 12360784
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtatat 41  Q
    |||||||||||||||||||||| || |||||||||||||    
T  12360822 ttctaaagtgacatacaatttgggacggagggagtatat 12360784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 71
Target Start/End: Complemental strand, 22551552 - 22551518
Alignment:
Q  37 tatattacaggggataaagacctattaaccctaaa 71  Q
    ||||||||||||| |||||||||||||||||||||    
T  22551552 tatattacagggggtaaagacctattaaccctaaa 22551518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 259
Target Start/End: Original strand, 26472138 - 26472188
Alignment:
Q  209 ttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaaca 259  Q
    ||||||||| |||| ||| |||||||| ||||| |||||||||||||||||    
T  26472138 ttgtgttgaaactccccaacaaaatggtagagttgaaagaaagcatcaaca 26472188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 34163157 - 34163119
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtatat 41  Q
    |||||||||||||||||||||| || |||||||||||||    
T  34163157 ttctaaagtgacatacaatttgggacggagggagtatat 34163119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 67
Target Start/End: Complemental strand, 38313200 - 38313170
Alignment:
Q  37 tatattacaggggataaagacctattaaccc 67  Q
    |||||||||||||||||||||||||||||||    
T  38313200 tatattacaggggataaagacctattaaccc 38313170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 266
Target Start/End: Complemental strand, 26466863 - 26466806
Alignment:
Q  209 ttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaacacatttta 266  Q
    |||||||||||||| ||| |||||||| || || |||||||| ||||| |||||||||    
T  26466863 ttgtgttgagactccccaacaaaatgggagggttgaaagaaaacatcagcacatttta 26466806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 29619464 - 29619501
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtata 40  Q
    |||||||||||||||||||||| || ||||||||||||    
T  29619464 ttctaaagtgacatacaatttgggacggagggagtata 29619501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 69
Target Start/End: Original strand, 10976774 - 10976806
Alignment:
Q  37 tatattacaggggataaagacctattaacccta 69  Q
    ||||||||||||| |||||||||||||||||||    
T  10976774 tatattacagggggtaaagacctattaacccta 10976806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 69
Target Start/End: Original strand, 15061850 - 15061882
Alignment:
Q  37 tatattacaggggataaagacctattaacccta 69  Q
    ||||||||||||| |||||||||||||||||||    
T  15061850 tatattacagggggtaaagacctattaacccta 15061882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 69
Target Start/End: Complemental strand, 15615133 - 15615101
Alignment:
Q  37 tatattacaggggataaagacctattaacccta 69  Q
    ||||||||||||| |||||||||||||||||||    
T  15615133 tatattacagggggtaaagacctattaacccta 15615101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 68
Target Start/End: Complemental strand, 32144950 - 32144922
Alignment:
Q  40 attacaggggataaagacctattaaccct 68  Q
    |||||||||||||||||||||||||||||    
T  32144950 attacaggggataaagacctattaaccct 32144922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 34382068 - 34382104
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtat 39  Q
    |||||||||||||||||||||| || |||||||||||    
T  34382068 ttctaaagtgacatacaatttgggacggagggagtat 34382104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 35798710 - 35798746
Alignment:
Q  37 tatattacaggggataaagacctattaaccctaaatt 73  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  35798710 tatattacaggggataaagacctactaacccttaatt 35798746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 35869964 - 35869928
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtat 39  Q
    |||||||||||||||||||||| || |||||||||||    
T  35869964 ttctaaagtgacatacaatttgggacggagggagtat 35869928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 42940799 - 42940763
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtat 39  Q
    |||||||||||||||||||||| || |||||||||||    
T  42940799 ttctaaagtgacatacaatttgggacggagggagtat 42940763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 69
Target Start/End: Complemental strand, 15902 - 15870
Alignment:
Q  37 tatattacaggggataaagacctattaacccta 69  Q
    |||||||||||||||||||||||||||||||||    
T  15902 tatattacaggggataaagacctattaacccta 15870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0769 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0769
Description:

Target: scaffold0769; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 71
Target Start/End: Original strand, 4178 - 4212
Alignment:
Q  37 tatattacaggggataaagacctattaaccctaaa 71  Q
    ||||||||||||| |||||||||||||||||||||    
T  4178 tatattacagggggtaaagacctattaaccctaaa 4212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0450 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 71
Target Start/End: Complemental strand, 7889 - 7855
Alignment:
Q  37 tatattacaggggataaagacctattaaccctaaa 71  Q
    ||||||||||||| |||||||||||||||||||||    
T  7889 tatattacagggggtaaagacctattaaccctaaa 7855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 39
Target Start/End: Complemental strand, 20700 - 20666
Alignment:
Q  5 ctaaagtgacatacaatttgagatggagggagtat 39  Q
    |||||| ||||||||||||||||||||||||||||    
T  20700 ctaaagcgacatacaatttgagatggagggagtat 20666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 5154 - 5118
Alignment:
Q  3 ttctaaagtgacatacaatttgagatggagggagtat 39  Q
    ||||||||||| |||||||||| ||||||||||||||    
T  5154 ttctaaagtgatatacaatttgggatggagggagtat 5118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 259
Target Start/End: Complemental strand, 27210 - 27158
Alignment:
Q  207 agttgtgttgagactctccagcaaaatggaagagtagaaagaaagcatcaaca 259  Q
    ||||||||||| |||| ||| |||||||| ||||| ||||| |||||||||||    
T  27210 agttgtgttgaaactccccaacaaaatgggagagttgaaaggaagcatcaaca 27158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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