View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16428_high_6 (Length: 283)
Name: NF16428_high_6
Description: NF16428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16428_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 19 - 274
Target Start/End: Complemental strand, 43063714 - 43063459
Alignment:
| Q |
19 |
agtgcatcaactcgaacgtaaccctagaggcattgcggctgctgaagtgatcggaggttggcaacaatggtaggtttcgatcaatcggaatctcaatcac |
118 |
Q |
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| T |
43063714 |
agtgcatcaactcgaacgtaaccctagaggcattgcggctgctgaagtgatcggagcttggcaacaatggtaggtttcgatcaatcggaatctcaatcac |
43063615 |
T |
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| Q |
119 |
tcatgttaatcttcgtatctgatattctcaatctcaccattaaatttgtttgttaattgtttaagacgttcaagcgtagaaatggaggtcgtaacaagca |
218 |
Q |
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| T |
43063614 |
tcatgttaatcttcgtatctgatattctcaatctcaccattaaatttgtttgttaattgtttcagacgttcaagcgtagaaatggaggtcgtaacaagca |
43063515 |
T |
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| Q |
219 |
tggtcgtggccatgtcaaattcatccgatgctccaactgtggaaaatgctgtccta |
274 |
Q |
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| T |
43063514 |
tggtcgtggccatgtcaaattcatccgatgctccaactgtggaaaatgctgtccta |
43063459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 190 - 272
Target Start/End: Complemental strand, 42559257 - 42559175
Alignment:
| Q |
190 |
aagcgtagaaatggaggtcgtaacaagcatggtcgtggccatgtcaaattcatccgatgctccaactgtggaaaatgctgtcc |
272 |
Q |
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||||| ||||||||||| |||||||| |||||||||||||||||||||||||| || |||||||||||||| ||||||||||| |
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| T |
42559257 |
aagcgcagaaatggaggccgtaacaaacatggtcgtggccatgtcaaattcattcgttgctccaactgtggtaaatgctgtcc |
42559175 |
T |
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