View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16428_low_1 (Length: 661)
Name: NF16428_low_1
Description: NF16428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16428_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 469; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 11 - 643
Target Start/End: Original strand, 33993541 - 33994185
Alignment:
| Q |
11 |
cacagactacaacaggttcagtgagtttgaaactgtataaaggtagtgcttctgtgacgggtcggaagagtccttatagtttatatagggaagatatttc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33993541 |
cacagactacaacaggttcagtgagtttgaaactgtataaaggtagtgcttctgtgacgggtcggaagagtccttatagtttatatagggaagatatttc |
33993640 |
T |
|
| Q |
111 |
ttcatttgagagtggggagatatataatcatgctgatgctgttgggtttataaagctttatggtcttccaatgaggatcagagccatgatggaacaaggc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33993641 |
ttcatttgagagtggggagatatataatcatgctgatgctgttgggtttataaagctttatggtcttccaatgaggatcagagccatgatggaacaaggc |
33993740 |
T |
|
| Q |
211 |
atttaaatgttactttgtttggactattannnnnnnnnnnnnnncttgcttgttcttgacaatgtttgtggaacttttattattgtgggaaataaatgac |
310 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33993741 |
atttaaatgttactttgtttggactatta--tgtgtgtgtgtgtcttgcttgttcttgacaatgtttgtggaacttttattattgtgggaaataaatgac |
33993838 |
T |
|
| Q |
311 |
gtgaagtgattggcatgtgcttagagaagcaaacttgattcgaataaagctatttgtttggcaaaactgcatcatgaatcctttattaccatttttcatg |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33993839 |
gtgaagtgattggcatgtgcttagagaagcaaacttgattcgaataaagctatttgtttggcaaaactgcatcatgaatcctttattaccatttttcatg |
33993938 |
T |
|
| Q |
411 |
ccgagttagtcatttat-----------------aatgtcaatattgttggaccaaacttcactttttcatcctacgctatcaaaagccttacgtggcca |
493 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
33993939 |
tcgagttagtcatttatgtttaaaaatgtttaagaatgtcaatatt-ttggaccaaacttcac-ttttcatcctacgctatcaaaagccttacgtggcca |
33994036 |
T |
|
| Q |
494 |
ttcaaaaagataaatttacattttcgattcatcaagaaaacatctaaattacatcatagtgagtgttttaatatccaatccatcaaaatcaacacatcnn |
593 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
33994037 |
ttcaaaaagataaa-ttacattttcgattcatcaagaaaacatctaaattacatcatagtgagtgttataatatccaatccatcaaaattaacacatctt |
33994135 |
T |
|
| Q |
594 |
nnnnnnnnnnnatctaaggttgtgattttcttgtcaaagatggtgtacat |
643 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33994136 |
ttttagtttttatctaaggttgtgattttcttgtcaaagatggtgtacat |
33994185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 34000550 - 34000617
Alignment:
| Q |
18 |
tacaacaggttcagtgagtttgaaactgtataaaggtagtgcttctgtgacgggtcggaagagtcctt |
85 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
34000550 |
tacaacaggttcagtgagtttgaaactgtataaaggcagtgcttctgtgacgggtcggaagagtcctt |
34000617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 491 - 551
Target Start/End: Complemental strand, 41194314 - 41194255
Alignment:
| Q |
491 |
ccattcaaaaagataaatttacattttcgattcatcaagaaaacatctaaattacatcata |
551 |
Q |
| |
|
||||| ||||||||||||| |||| ||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
41194314 |
ccatttaaaaagataaatt-acatcttcaattcatcaagataacatctaaattacatcata |
41194255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 516 - 580
Target Start/End: Complemental strand, 12692829 - 12692765
Alignment:
| Q |
516 |
ttcgattcatcaagaaaacatctaaattacatcatagtgagtgttttaatatccaatccatcaaa |
580 |
Q |
| |
|
|||||||||||| || ||||| |||||||||||||| ||| |||| | |||| ||||||||||| |
|
|
| T |
12692829 |
ttcgattcatcacgataacatttaaattacatcataatgattgttatgttatctaatccatcaaa |
12692765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 14 - 221
Target Start/End: Complemental strand, 18852424 - 18852217
Alignment:
| Q |
14 |
agactacaacaggttcagtgagtttgaaactgtataaaggtagtgcttctgtgacgggtcggaagagtccttatagtttatatagggaagatatttcttc |
113 |
Q |
| |
|
|||| ||||||||||| |||| ||||||| | || |||||| || | |||| || ||| ||||||| || | ||| | |||||| ||||||| || || |
|
|
| T |
18852424 |
agaccacaacaggttctgtgactttgaaattatacaaaggttctgttactgtaacaggtaggaagagcccctttagcctgtataggcaagatatctcatc |
18852325 |
T |
|
| Q |
114 |
atttgagagtggggagatatataatcatgctgatgctgttgggtttataaagctttatggtcttccaatgaggatcagagccatgatggaacaaggcatt |
213 |
Q |
| |
|
|||||||| | | || |||||| |||| |||||||||| ||| ||||| |||||| ||||||||||||| | || | || ||| | || ||||||||| |
|
|
| T |
18852324 |
atttgagaatagtgatatatatgatcaagctgatgctgctggttttatccggctttacggtcttccaatgaaggtccgggcaatgcttgagcaaggcatt |
18852225 |
T |
|
| Q |
214 |
taaatgtt |
221 |
Q |
| |
|
||| |||| |
|
|
| T |
18852224 |
taagtgtt |
18852217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 180
Target Start/End: Complemental strand, 42865474 - 42865369
Alignment:
| Q |
75 |
gaagagtccttatagtttatatagggaagatatttcttcatttgagagtggggagatatataatcatgctgatgctgttgggtttataaagctttatggt |
174 |
Q |
| |
|
||||||||||| ||| | |||||| ||||||| || ||||||||| || | ||||||||| |||| |||||||||| ||| ||||| |||||| ||| |
|
|
| T |
42865474 |
gaagagtccttttagcctgtataggcaagatatctcatcatttgagggtagtgagatatatgatcaagctgatgctgctggttttatccggctttacggt |
42865375 |
T |
|
| Q |
175 |
cttcca |
180 |
Q |
| |
|
|||||| |
|
|
| T |
42865374 |
cttcca |
42865369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 520 - 551
Target Start/End: Complemental strand, 19045269 - 19045238
Alignment:
| Q |
520 |
attcatcaagaaaacatctaaattacatcata |
551 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
19045269 |
attcatcaagaaaacatctaaattacatcata |
19045238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University