View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16428_low_10 (Length: 238)
Name: NF16428_low_10
Description: NF16428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16428_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 226
Target Start/End: Original strand, 52713899 - 52714106
Alignment:
| Q |
19 |
ctttttaagtcaagccagcatcatgaatagaaaactaggaaacaacttcgaaatcccgacaggttctgtccccgtctttggtgccatcaacggcctcata |
118 |
Q |
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| T |
52713899 |
ctttttaagtcaagccagcatcatgaatagaaaactaggaaacaacttcgaaatcccgacaggttctgtccccgtctttggtgccatcaacggcctcata |
52713998 |
T |
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| Q |
119 |
cttgtacctttctacgagagattcataatcccatttctccgtaagtttaccggccaccaccgtggcatcacatcgttacaacgaatgggcgttgggcttt |
218 |
Q |
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| T |
52713999 |
cttgtacctttctacgagagattcataatcccatttctccgtaagtttaccggccaccaccgtggcatcacatcgttacaacgaatgggtgttgggcttt |
52714098 |
T |
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| Q |
219 |
tcatctca |
226 |
Q |
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|||||||| |
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| T |
52714099 |
tcatctca |
52714106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 26 - 226
Target Start/End: Original strand, 52722928 - 52723128
Alignment:
| Q |
26 |
agtcaagccagcatcatgaatagaaaactaggaaacaacttcgaaatcccgacaggttctgtccccgtctttggtgccatcaacggcctcatacttgtac |
125 |
Q |
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| T |
52722928 |
agtcaagccagcatcatgaatagaaaactaggaaacaagttcgaaatcccaacaggttctgtccctgtctttgctgccatcaacggcctcatacttgtac |
52723027 |
T |
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| Q |
126 |
ctttctacgagagattcataatcccatttctccgtaagtttaccggccaccaccgtggcatcacatcgttacaacgaatgggcgttgggcttttcatctc |
225 |
Q |
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| T |
52723028 |
ctctctacgagagattaataatcccatttctccgcaaatttacaggccatcaccgtggcatcacatcgttacaacgaatgggtgttgggctttttatctc |
52723127 |
T |
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| Q |
226 |
a |
226 |
Q |
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| T |
52723128 |
a |
52723128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 65 - 219
Target Start/End: Original strand, 52699668 - 52699822
Alignment:
| Q |
65 |
ttcgaaatcccgacaggttctgtccccgtctttggtgccatcaacggcctcatacttgtacctttctacgagagattcataatcccatttctccgtaagt |
164 |
Q |
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||||||||||| | || ||||| |||| |||| ||||| || | | ||||||||| |||| || || |||||||| ||||||||| ||||||| || | |
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| T |
52699668 |
ttcgaaatcccaaatggatctgttaccgtgtttgctgccagcagcagtctcatacttatacccttatatgagagatttataatcccaattctccgaaaat |
52699767 |
T |
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| Q |
165 |
ttaccggccaccaccgtggcatcacatcgttacaacgaatgggcgttgggctttt |
219 |
Q |
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||||||||||| ||| ||||||||||| |||||||||||||| ||||| ||||| |
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| T |
52699768 |
ttaccggccacagccgcggcatcacatccttacaacgaatgggagttggactttt |
52699822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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