View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16428_low_2 (Length: 453)

Name: NF16428_low_2
Description: NF16428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16428_low_2
NF16428_low_2
[»] chr8 (11 HSPs)
chr8 (195-442)||(20852690-20852940)
chr8 (17-103)||(20853041-20853129)
chr8 (45-116)||(12045542-12045613)
chr8 (45-116)||(42443217-42443288)
chr8 (43-116)||(1796594-1796667)
chr8 (43-116)||(32725669-32725742)
chr8 (48-113)||(5782902-5782967)
chr8 (43-115)||(14233530-14233603)
chr8 (45-116)||(6005055-6005126)
chr8 (42-116)||(30578365-30578440)
chr8 (45-113)||(36740426-36740494)
[»] chr7 (13 HSPs)
chr7 (45-115)||(35072134-35072204)
chr7 (45-115)||(35098476-35098546)
chr7 (43-116)||(18157072-18157145)
chr7 (45-116)||(25940556-25940627)
chr7 (45-116)||(27688748-27688819)
chr7 (45-115)||(6655506-6655576)
chr7 (45-115)||(2469804-2469874)
chr7 (46-108)||(22692199-22692261)
chr7 (76-116)||(29034196-29034236)
chr7 (45-116)||(9031318-9031389)
chr7 (37-116)||(47644820-47644899)
chr7 (51-116)||(37351885-37351950)
chr7 (47-116)||(43107723-43107792)
[»] chr3 (18 HSPs)
chr3 (49-116)||(29800442-29800509)
chr3 (44-116)||(43409253-43409325)
chr3 (43-116)||(1031314-1031387)
chr3 (48-116)||(41717374-41717442)
chr3 (45-116)||(31326819-31326890)
chr3 (45-116)||(1901815-1901886)
chr3 (45-116)||(1911261-1911332)
chr3 (45-116)||(25959431-25959502)
chr3 (45-116)||(32795947-32796018)
chr3 (45-116)||(44593077-44593148)
chr3 (45-115)||(7867598-7867668)
chr3 (45-113)||(34607808-34607876)
chr3 (45-113)||(50294013-50294081)
chr3 (46-113)||(462291-462358)
chr3 (45-116)||(1295443-1295514)
chr3 (45-112)||(32981010-32981077)
chr3 (46-116)||(981581-981651)
chr3 (38-115)||(29706015-29706092)
[»] chr1 (23 HSPs)
chr1 (43-116)||(4604640-4604713)
chr1 (45-116)||(40595943-40596014)
chr1 (45-115)||(44730756-44730826)
chr1 (46-116)||(51339590-51339660)
chr1 (45-113)||(18648879-18648947)
chr1 (45-116)||(42299076-42299148)
chr1 (45-116)||(36930645-36930716)
chr1 (43-115)||(11121592-11121665)
chr1 (45-116)||(48872490-48872561)
chr1 (45-116)||(49621472-49621543)
chr1 (45-115)||(25061845-25061915)
chr1 (43-116)||(45349984-45350057)
chr1 (45-116)||(25239125-25239197)
chr1 (45-113)||(30687166-30687234)
chr1 (45-116)||(40605309-40605381)
chr1 (44-116)||(43611970-43612042)
chr1 (45-116)||(27352741-27352812)
chr1 (53-116)||(30530471-30530534)
chr1 (48-115)||(32821747-32821814)
chr1 (45-116)||(50527946-50528017)
chr1 (45-103)||(51172196-51172254)
chr1 (45-116)||(8577390-8577462)
chr1 (45-116)||(21255673-21255745)
[»] chr5 (12 HSPs)
chr5 (45-115)||(15639497-15639567)
chr5 (44-116)||(582757-582829)
chr5 (44-116)||(9636046-9636118)
chr5 (45-116)||(24792563-24792634)
chr5 (43-116)||(7080625-7080696)
chr5 (44-116)||(7144686-7144758)
chr5 (45-113)||(38387825-38387892)
chr5 (45-116)||(91326-91397)
chr5 (45-116)||(6865676-6865747)
chr5 (44-103)||(26627454-26627513)
chr5 (43-116)||(19437368-19437441)
chr5 (43-116)||(36624429-36624502)
[»] scaffold0184 (1 HSPs)
scaffold0184 (43-116)||(16481-16554)
[»] scaffold0078 (1 HSPs)
scaffold0078 (43-116)||(56290-56363)
[»] chr6 (8 HSPs)
chr6 (44-116)||(8173200-8173272)
chr6 (45-113)||(32730003-32730071)
chr6 (45-115)||(16533148-16533219)
chr6 (45-116)||(25561831-25561900)
chr6 (45-116)||(26101345-26101414)
chr6 (43-103)||(25567380-25567439)
chr6 (45-116)||(21443799-21443870)
chr6 (51-115)||(32253892-32253957)
[»] chr4 (12 HSPs)
chr4 (44-116)||(28676042-28676114)
chr4 (45-116)||(46567040-46567111)
chr4 (49-116)||(12638935-12639002)
chr4 (45-112)||(37977230-37977297)
chr4 (44-106)||(23836988-23837050)
chr4 (45-116)||(18874812-18874884)
chr4 (49-116)||(16508870-16508937)
chr4 (44-103)||(40847491-40847550)
chr4 (49-115)||(30778157-30778223)
chr4 (45-74)||(54801150-54801179)
chr4 (44-116)||(33438156-33438228)
chr4 (43-71)||(38889033-38889061)
[»] scaffold0166 (1 HSPs)
scaffold0166 (45-116)||(34946-35017)
[»] scaffold0003 (1 HSPs)
scaffold0003 (45-116)||(337229-337300)
[»] chr2 (13 HSPs)
chr2 (47-116)||(5167633-5167702)
chr2 (52-116)||(10288263-10288327)
chr2 (45-116)||(21805675-21805746)
chr2 (43-116)||(305855-305929)
chr2 (43-116)||(32128241-32128313)
chr2 (46-113)||(11126578-11126644)
chr2 (54-116)||(13553254-13553316)
chr2 (45-115)||(40951302-40951372)
chr2 (51-116)||(3091852-3091917)
chr2 (45-90)||(19637364-19637409)
chr2 (47-116)||(19668078-19668147)
chr2 (45-90)||(19835957-19836002)
chr2 (48-116)||(30856918-30856986)
[»] scaffold0002 (1 HSPs)
scaffold0002 (45-115)||(440830-440900)
[»] scaffold0115 (1 HSPs)
scaffold0115 (51-115)||(15084-15147)


Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 195 - 442
Target Start/End: Complemental strand, 20852940 - 20852690
Alignment:
Q  195 ggttgtacaaatatcatttctcctaaaatatgttagataaccgtggtaaagtacataattaaggacggtgttaagaaataaaaaattgttaagataaatt 294  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20852940 ggttgtacaaatatcatttctcctaaaatatgttagatgaccgtggtaaagtacataattaaggacggtgttaagaaataaaaaattgttaagataaatt 20852841  T
Q  295 tgatgcaatgccagtgtaaatctttatttattgtcaatcaattataaatcatcctgttgg--tcattccttgggtgttggaggtacaattaatc-ttttg 391  Q
    ||||||||||   |||||||||||||| ||||||||||||||||||||||||||||||||  |||||||||||| ||||||||| ||||||||| |||||    
T  20852840 tgatgcaatgtatgtgtaaatctttatatattgtcaatcaattataaatcatcctgttgggatcattccttgggggttggaggtgcaattaatctttttg 20852741  T
Q  392 aattatatgaactacaattaatcattccttgtgatctgataaactattcat 442  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  20852740 aattatatgaacaacaattaatcattccttgtgatctgataaactattcat 20852690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 20853129 - 20853041
Alignment:
Q  17 attttttctgtaatggagactaaaacatgagcaatgatatttgaacaattatttggtataacc--tttttgacaatattctttttctct 103  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||| || |  ||||||||||| ||||||||||||    
T  20853129 attttttctgtaatggagactaaaatatgagaaatgatatttgaacaatcatttggtacaatctttttttgacaatcttctttttctct 20853041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 45 - 116
Target Start/End: Original strand, 12045542 - 12045613
Alignment:
Q  45 gagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    ||||||||||||||||||||  |||||||||||||||||||||||  ||||| || ||||||||||||||||    
T  12045542 gagcaatgatatttgaacaaccatttggtataacctttttgacaaccttcttcttgtctcttctcattggtc 12045613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 116
Target Start/End: Complemental strand, 42443288 - 42443217
Alignment:
Q  45 gagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    |||||||||||||||||||| ||||||||| ||  ||||||||||  ||||| ||||| |||||||||||||    
T  42443288 gagcaatgatatttgaacaactatttggtacaaattttttgacaaccttcttcttctcccttctcattggtc 42443217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 43 - 116
Target Start/End: Complemental strand, 1796667 - 1796594
Alignment:
Q  43 atgagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    ||||||||||||||||||||||  ||||| || ||||| ||||||||  ||| ||||||||||| |||||||||    
T  1796667 atgagcaatgatatttgaacaaccatttgttacaacctatttgacaaccttccttttctctcttttcattggtc 1796594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 43 - 116
Target Start/End: Original strand, 32725669 - 32725742
Alignment:
Q  43 atgagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    |||||||||||||||| ||||| ||||| |||||| || ||||||||  ||| ||||||||||| |||||||||    
T  32725669 atgagcaatgatatttaaacaactatttagtataatctatttgacaaccttccttttctctcttttcattggtc 32725742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 48 - 113
Target Start/End: Complemental strand, 5782967 - 5782902
Alignment:
Q  48 caatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattg 113  Q
    |||||||||||||||||  |||||||| ||||| ||||||||  ||| ||||||||||| ||||||    
T  5782967 caatgatatttgaacaaccatttggtacaacctatttgacaactttcattttctctcttttcattg 5782902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 43 - 115
Target Start/End: Original strand, 14233530 - 14233603
Alignment:
Q  43 atgagcaatgatatttgaacaattattt-ggtataacctttttgacaatattctttttctctcttctcattggt 115  Q
    ||||| |||||||| ||||||||||||| |||||||| ||| ||||||  || || ||||||||||||||||||    
T  14233530 atgagtaatgatatctgaacaattattttggtataacttttgtgacaactttgttgttctctcttctcattggt 14233603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 116
Target Start/End: Complemental strand, 6005126 - 6005055
Alignment:
Q  45 gagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    |||||||||| |||||||||  |||||||| ||| | ||||||||  ||| ||||||||||| |||||||||    
T  6005126 gagcaatgatgtttgaacaaccatttggtacaacttatttgacaactttccttttctctcttttcattggtc 6005055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 116
Target Start/End: Complemental strand, 30578440 - 30578365
Alignment:
Q  42 catgagcaatgatatttgaacaattatttggt-ataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    |||||||||||||||||||||||||||||| | | ||| ||  ||||||  | ||||||||||||| |||||||||    
T  30578440 catgagcaatgatatttgaacaattatttgctgacaactttgatgacaacctcctttttctctcttatcattggtc 30578365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 113
Target Start/End: Complemental strand, 36740494 - 36740426
Alignment:
Q  45 gagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattg 113  Q
    ||||||||||||||||||||  ||||| || || || ||||||||  ||| ||||||||||| ||||||    
T  36740494 gagcaatgatatttgaacaaccatttgatacaatctatttgacaaccttcattttctctcttttcattg 36740426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 45 - 115
Target Start/End: Original strand, 35072134 - 35072204
Alignment:
Q  45 gagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggt 115  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||| ||| ||||||||||||||||||||    
T  35072134 gagcaatgatatttgaacaactatttggtacaacctttttgacaatcttcattttctctcttctcattggt 35072204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 45 - 115
Target Start/End: Original strand, 35098476 - 35098546
Alignment:
Q  45 gagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggt 115  Q
    ||||||||||| |||||||| ||||||||| ||||||||||||||| ||| ||||||||||||||||||||    
T  35098476 gagcaatgataattgaacaactatttggtacaacctttttgacaatcttcattttctctcttctcattggt 35098546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 43 - 116
Target Start/End: Original strand, 18157072 - 18157145
Alignment:
Q  43 atgagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    |||||||||||||||||||||| ||||||||| ||||| ||||||||  ||| ||||||||||| |||||||||    
T  18157072 atgagcaatgatatttgaacaactatttggtacaacctatttgacaaccttccttttctctcttttcattggtc 18157145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 116
Target Start/End: Original strand, 25940556 - 25940627
Alignment:
Q  45 gagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    |||||||||||||||||||| ||||||||| || || ||||||||  ||| ||||||||||| |||||||||    
T  25940556 gagcaatgatatttgaacaactatttggtacaatctatttgacaaccttcattttctctcttttcattggtc 25940627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 116
Target Start/End: Complemental strand, 27688819 - 27688748
Alignment:
Q  45 gagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    ||||||||||||||| |||||||||||||| || || ||||||||  ||| ||||||||||| |||||||||    
T  27688819 gagcaatgatatttgtacaattatttggtacaatctatttgacaaccttccttttctctcttttcattggtc 27688748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 45 - 115
Target Start/End: Original strand, 6655506 - 6655576
Alignment:
Q  45 gagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggt 115  Q
    |||||||||||||| |||||  |||||||| || |||||||||||| |||||||| |||||| ||||||||    
T  6655506 gagcaatgatatttaaacaaccatttggtacaatctttttgacaatcttctttttatctcttttcattggt 6655576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 115
Target Start/End: Complemental strand, 2469874 - 2469804
Alignment:
Q  45 gagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggt 115  Q
    ||||||||||||||||||||  |||||||| ||||| ||||||||  ||| |||||||| || ||||||||    
T  2469874 gagcaatgatatttgaacaaccatttggtacaacctatttgacaaccttccttttctctattttcattggt 2469804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 22692261 - 22692199
Alignment:
Q  46 agcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttct 108  Q
    |||||| |||||||||||| ||||| |||||| |||||||||||| ||  |||||||||||||    
T  22692261 agcaatcatatttgaacaactatttagtataatctttttgacaatctttcttttctctcttct 22692199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 29034236 - 29034196
Alignment:
Q  76 aacctttttgacaatattctttttctctcttctcattggtc 116  Q
    ||||||||||||||| ||||||||||||||| |||||||||    
T  29034236 aacctttttgacaatcttctttttctctcttttcattggtc 29034196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 116
Target Start/End: Complemental strand, 9031389 - 9031318
Alignment:
Q  45 gagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    ||||||||||||||||||||  |||||||| || || ||||||||  ||| ||||||||||| | |||||||    
T  9031389 gagcaatgatatttgaacaaccatttggtacaatctatttgacaaccttcattttctctctttttattggtc 9031318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 116
Target Start/End: Complemental strand, 47644899 - 47644820
Alignment:
Q  37 taaaacatgagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    ||||| ||||| | |||||| || |||||||||||||||||| ||  ||||||  ||| ||| |||||||||||||||||    
T  47644899 taaaaaatgagtagtgatatatgtacaattatttggtataactttgatgacaactttcatttgctctcttctcattggtc 47644820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 116
Target Start/End: Original strand, 37351885 - 37351950
Alignment:
Q  51 tgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    ||||||||||||||| ||||| |||||| ||| ||||||| |  |||||||||||| | |||||||    
T  37351885 tgatatttgaacaatcatttgatataacttttgtgacaatttcttttttctctctttttattggtc 37351950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 116
Target Start/End: Complemental strand, 43107792 - 43107723
Alignment:
Q  47 gcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    ||||||||||||||||||  |||||||| ||||| ||| ||||  ||| |||||| |||| |||||||||    
T  43107792 gcaatgatatttgaacaaccatttggtacaacctatttaacaaccttccttttctttcttttcattggtc 43107723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 49 - 116
Target Start/End: Original strand, 29800442 - 29800509
Alignment:
Q  49 aatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    |||||||||||||||||||||||||| ||||| ||||| ||| ||||||||||||||| |||||||||    
T  29800442 aatgatatttgaacaattatttggtacaacctatttgaaaatcttctttttctctcttttcattggtc 29800509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 44 - 116
Target Start/End: Original strand, 43409253 - 43409325
Alignment:
Q  44 tgagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    |||||| |||||||||||||||||||| |||||| || ||||||||| || |||||||||||| |||||||||    
T  43409253 tgagcattgatatttgaacaattatttagtataatctatttgacaatcttttttttctctcttttcattggtc 43409325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 43 - 116
Target Start/End: Original strand, 1031314 - 1031387
Alignment:
Q  43 atgagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    |||||||||||||||||||||||||||||||| ||| ||| ||||||  || ||||||| |||||| |||||||    
T  1031314 atgagcaatgatatttgaacaattatttggtacaacttttatgacaactttatttttctttcttcttattggtc 1031387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 48 - 116
Target Start/End: Complemental strand, 41717442 - 41717374
Alignment:
Q  48 caatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    ||||||||||||| |||  ||||||||||| || ||||||||| ||||||||||||||| |||||||||    
T  41717442 caatgatatttgatcaaccatttggtataatctatttgacaatcttctttttctctcttttcattggtc 41717374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 116
Target Start/End: Complemental strand, 31326890 - 31326819
Alignment:
Q  45 gagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    ||||||||||||||||||||  |||||||| || || ||||||||| ||| ||||||||||| |||||||||    
T  31326890 gagcaatgatatttgaacaaccatttggtacaatctatttgacaatcttcattttctctcttttcattggtc 31326819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 116
Target Start/End: Original strand, 1901815 - 1901886
Alignment:
Q  45 gagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    ||||||| ||||||||||||  |||||||| ||||| ||||||||  ||| ||||||||||| |||||||||    
T  1901815 gagcaataatatttgaacaaccatttggtacaacctatttgacaaccttccttttctctcttttcattggtc 1901886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 116
Target Start/End: Original strand, 1911261 - 1911332
Alignment:
Q  45 gagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    ||||||| ||||||||||||  |||||||| ||||| ||||||||  ||| ||||||||||| |||||||||    
T  1911261 gagcaataatatttgaacaaccatttggtacaacctatttgacaaccttccttttctctcttttcattggtc 1911332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 116
Target Start/End: Original strand, 25959431 - 25959502
Alignment:
Q  45 gagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    ||||||||||||||||||||  ||||| || ||||| ||||||||  ||| ||||||||||| |||||||||    
T  25959431 gagcaatgatatttgaacaaccatttgatacaacctatttgacaactttcattttctctcttttcattggtc 25959502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 116
Target Start/End: Complemental strand, 32796018 - 32795947
Alignment:
Q  45 gagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    ||||||||||||||||||||  |||||||| ||||| ||||||||  ||| ||||||||||| | |||||||    
T  32796018 gagcaatgatatttgaacaaccatttggtacaacctatttgacaactttcattttctctctttttattggtc 32795947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 116
Target Start/End: Complemental strand, 44593148 - 44593077
Alignment:
Q  45 gagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    ||||||||||||||||| ||| |||||||| ||| ||||||||||  ||| |||||||| || |||||||||    
T  44593148 gagcaatgatatttgaataatcatttggtacaacttttttgacaaccttcattttctctattttcattggtc 44593077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 115
Target Start/End: Original strand, 7867598 - 7867668
Alignment:
Q  45 gagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggt 115  Q
    ||||||||||||||||||||  |||||||| || || ||||||||  ||| ||||||||||| ||||||||    
T  7867598 gagcaatgatatttgaacaaccatttggtacaatctatttgacaaccttcattttctctcttttcattggt 7867668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 45 - 113
Target Start/End: Original strand, 34607808 - 34607876
Alignment:
Q  45 gagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattg 113  Q
    |||||| ||||||||||||| ||||||||| || || ||||||||  ||| ||||||||||| ||||||    
T  34607808 gagcaacgatatttgaacaactatttggtacaatctatttgacaaccttcattttctctcttttcattg 34607876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 45 - 113
Target Start/End: Original strand, 50294013 - 50294081
Alignment:
Q  45 gagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattg 113  Q
    |||||||||||||| |||||  |||||||| ||| | ||||||||  ||||||||||||||| ||||||    
T  50294013 gagcaatgatattttaacaaccatttggtacaacttatttgacaactttctttttctctcttttcattg 50294081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 113
Target Start/End: Original strand, 462291 - 462358
Alignment:
Q  46 agcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattg 113  Q
    |||||||||||||||||||  |||||||| ||||| ||||||||  ||  ||||||||||| ||||||    
T  462291 agcaatgatatttgaacaaccatttggtacaacctatttgacaacctttcttttctctcttttcattg 462358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 116
Target Start/End: Complemental strand, 1295514 - 1295443
Alignment:
Q  45 gagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    ||||||||||||||||||||  ||||| || |||  |||||||||  |||||||||| |||| |||||||||    
T  1295514 gagcaatgatatttgaacaaccatttgctacaacaattttgacaaccttctttttctatcttttcattggtc 1295443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 112
Target Start/End: Original strand, 32981010 - 32981077
Alignment:
Q  45 gagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcatt 112  Q
    ||||||||||||||||||||  |||||||| ||  ||||||||||  ||||| ||||| |||||||||    
T  32981010 gagcaatgatatttgaacaaccatttggtacaaattttttgacaaccttcttcttctcccttctcatt 32981077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 116
Target Start/End: Complemental strand, 981651 - 981581
Alignment:
Q  46 agcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    |||||||||||||||||||  |||| ||| | ||| ||||||||  ||| ||||||||||| |||||||||    
T  981651 agcaatgatatttgaacaaccatttagtacagcctatttgacaaccttcattttctctcttttcattggtc 981581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 115
Target Start/End: Complemental strand, 29706092 - 29706015
Alignment:
Q  38 aaaacatgagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggt 115  Q
    |||||||||| | |||||||||||||| |||||| || ||| ||| ||||||  |  |||||||||||| ||||||||    
T  29706092 aaaacatgagtagtgatatttgaacaactatttgatacaacttttgtgacaacttcttttttctctcttttcattggt 29706015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 43 - 116
Target Start/End: Complemental strand, 4604713 - 4604640
Alignment:
Q  43 atgagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    ||||||||||||||||||||||  |||||||| ||||| ||||||||  ||||||||||||||| |||||||||    
T  4604713 atgagcaatgatatttgaacaacgatttggtacaacctgtttgacaaccttctttttctctcttttcattggtc 4604640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 45 - 116
Target Start/End: Original strand, 40595943 - 40596014
Alignment:
Q  45 gagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    ||||||||||||||||||||  ||||| || |||||||||||||||| | |||||||||||| |||||||||    
T  40595943 gagcaatgatatttgaacaaccatttgatacaacctttttgacaataatttttttctctcttttcattggtc 40596014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 45 - 115
Target Start/End: Complemental strand, 44730826 - 44730756
Alignment:
Q  45 gagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggt 115  Q
    ||||||||||||||||||||  |||||||| ||||||||||||||  |||||||||||| || ||||||||    
T  44730826 gagcaatgatatttgaacaaccatttggtacaacctttttgacaaccttctttttctcttttttcattggt 44730756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 46 - 116
Target Start/End: Original strand, 51339590 - 51339660
Alignment:
Q  46 agcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    ||||||||||||||||||| ||||||||| ||||| ||||||||  ||| ||||||||||| |||||||||    
T  51339590 agcaatgatatttgaacaactatttggtacaacctatttgacaaccttcattttctctcttttcattggtc 51339660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 45 - 113
Target Start/End: Complemental strand, 18648947 - 18648879
Alignment:
Q  45 gagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattg 113  Q
    ||||||| |||||||||||||||||||||| || |||| ||| |||||| |||||||||||||| ||||    
T  18648947 gagcaatcatatttgaacaattatttggtacaatctttatgagaatattttttttctctcttcttattg 18648879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 45 - 116
Target Start/End: Original strand, 42299076 - 42299148
Alignment:
Q  45 gagcaatgatatttgaacaattatttggtataac-ctttttgacaatattctttttctctcttctcattggtc 116  Q
    |||||||||||||||||||||||||| ||| |||  ||||||||||| ||||||||||||||| | |||||||    
T  42299076 gagcaatgatatttgaacaattatttagtacaacattttttgacaatcttctttttctctctttttattggtc 42299148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 116
Target Start/End: Original strand, 36930645 - 36930716
Alignment:
Q  45 gagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    ||||||||||||||||||||  |||| ||| ||||||||||||||  ||||||||||||||| | |||||||    
T  36930645 gagcaatgatatttgaacaaccattttgtacaacctttttgacaaccttctttttctctctttttattggtc 36930716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 43 - 115
Target Start/End: Complemental strand, 11121665 - 11121592
Alignment:
Q  43 atgagcaatgatatttgaacaattattt-ggtataacctttttgacaatattctttttctctcttctcattggt 115  Q
    |||||||||||||||||||||| ||||| |||||||| ||| ||||||| || || || |||||||||||||||    
T  11121665 atgagcaatgatatttgaacaactattttggtataacttttgtgacaatcttgttgttgtctcttctcattggt 11121592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 116
Target Start/End: Complemental strand, 48872561 - 48872490
Alignment:
Q  45 gagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    ||||||||||||||||||||  ||||| || ||||| ||||||||  ||| ||||||||||| |||||||||    
T  48872561 gagcaatgatatttgaacaaccatttgatacaacctatttgacaaccttccttttctctcttttcattggtc 48872490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 116
Target Start/End: Complemental strand, 49621543 - 49621472
Alignment:
Q  45 gagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    ||||||||||||||||||||  |||||||| || || ||||||||| ||| ||||||||||| | |||||||    
T  49621543 gagcaatgatatttgaacaaccatttggtacaatctatttgacaatcttcattttctctctttttattggtc 49621472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 115
Target Start/End: Complemental strand, 25061915 - 25061845
Alignment:
Q  45 gagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggt 115  Q
    ||||||||||||||||||||  ||||| || || || ||||||||  ||||||||||||||| ||||||||    
T  25061915 gagcaatgatatttgaacaaccatttgatacaatctatttgacaaccttctttttctctcttttcattggt 25061845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 43 - 116
Target Start/End: Original strand, 45349984 - 45350057
Alignment:
Q  43 atgagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    |||| |||||| |||| |||||| |||||||| || |||||||||||| || ||| |||||||| |||||||||    
T  45349984 atgaacaatgacattttaacaatcatttggtacaatctttttgacaatcttttttctctctcttttcattggtc 45350057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 45 - 116
Target Start/End: Original strand, 25239125 - 25239197
Alignment:
Q  45 gagcaatgatatttgaacaattatttggtataacctttttgacaa-tattctttttctctcttctcattggtc 116  Q
    |||||||||||||||||||| |||| |||| ||||||| ||| || | || |||||||||||||| |||||||    
T  25239125 gagcaatgatatttgaacaactattgggtacaacctttatgataacttttttttttctctcttcttattggtc 25239197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 45 - 113
Target Start/End: Complemental strand, 30687234 - 30687166
Alignment:
Q  45 gagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattg 113  Q
    ||||||||||||||||||||  |||||||| ||  ||||||||||  ||||| ||||| ||||||||||    
T  30687234 gagcaatgatatttgaacaaccatttggtacaaattttttgacaaccttcttcttctcccttctcattg 30687166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 45 - 116
Target Start/End: Original strand, 40605309 - 40605381
Alignment:
Q  45 gagcaatgatatttgaacaattatttggtataacctttt-tgacaatattctttttctctcttctcattggtc 116  Q
    ||||||||||||||||||||  ||||| ||  | ||||| ||||||  |||||||||||||||||||||||||    
T  40605309 gagcaatgatatttgaacaaccatttgctaacaacttttatgacaaccttctttttctctcttctcattggtc 40605381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 116
Target Start/End: Original strand, 43611970 - 43612042
Alignment:
Q  44 tgagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    ||||||||||||||||| |||  |||||||| ||||| ||||| ||| ||| | ||||||||| |||||||||    
T  43611970 tgagcaatgatatttgaccaaccatttggtacaacctatttgataatcttcctcttctctcttttcattggtc 43612042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 116
Target Start/End: Complemental strand, 27352812 - 27352741
Alignment:
Q  45 gagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    ||||||||||||||||||||  |||||||| ||||| || |||||  ||  ||||||||||| |||||||||    
T  27352812 gagcaatgatatttgaacaaccatttggtacaacctattcgacaacctttcttttctctcttttcattggtc 27352741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 116
Target Start/End: Original strand, 30530471 - 30530534
Alignment:
Q  53 atatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    ||||||||||||  |||||||| ||||| ||||||||  ||| ||||||||||| |||||||||    
T  30530471 atatttgaacaaccatttggtacaacctatttgacaactttccttttctctcttttcattggtc 30530534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 115
Target Start/End: Complemental strand, 32821814 - 32821747
Alignment:
Q  48 caatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggt 115  Q
    |||||||||||||||||  ||||| || ||| | |||||||| |||| ||||||||||| ||||||||    
T  32821814 caatgatatttgaacaaccatttgataaaacttatttgacaacattcattttctctcttttcattggt 32821747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 116
Target Start/End: Original strand, 50527946 - 50528017
Alignment:
Q  45 gagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    ||||||| ||||||||||||  ||||| || || || ||||||||  ||||||||||||||| |||||||||    
T  50527946 gagcaatcatatttgaacaaccatttgctacaatctatttgacaaccttctttttctctcttttcattggtc 50528017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 51172196 - 51172254
Alignment:
Q  45 gagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctct 103  Q
    ||||||||||||||||||||| |||||||| || || ||||||||| ||  ||||||||    
T  51172196 gagcaatgatatttgaacaatcatttggtacaatctatttgacaatctttcttttctct 51172254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 116
Target Start/End: Original strand, 8577390 - 8577462
Alignment:
Q  45 gagcaatgatatttgaacaatta-tttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    |||||||||||||||||||| || ||||||||||| |||  |||||  || || |||||| ||||||||||||    
T  8577390 gagcaatgatatttgaacaactattttggtataacttttgggacaaccttgttgttctctattctcattggtc 8577462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 116
Target Start/End: Original strand, 21255673 - 21255745
Alignment:
Q  45 gagcaatgatatttgaacaattatttggtataacctttt-tgacaatattctttttctctcttctcattggtc 116  Q
    ||||||||||||||||||||  ||||| ||  | ||||| ||||||  | |||||||||||||||||||||||    
T  21255673 gagcaatgatatttgaacaaccatttgctaacaacttttatgacaacctcctttttctctcttctcattggtc 21255745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 45 - 115
Target Start/End: Complemental strand, 15639567 - 15639497
Alignment:
Q  45 gagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggt 115  Q
    ||||||||||||||||||||  |||||||| ||||||||||||||  ||||| ||||| ||||||||||||    
T  15639567 gagcaatgatatttgaacaaccatttggtacaacctttttgacaaccttcttcttctcccttctcattggt 15639497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 44 - 116
Target Start/End: Original strand, 582757 - 582829
Alignment:
Q  44 tgagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    |||||||||||||||||||||| |||||||| ||  ||||||||||  |||||| |||||||| |||||||||    
T  582757 tgagcaatgatatttgaacaatcatttggtacaagatttttgacaaccttctttctctctcttttcattggtc 582829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 44 - 116
Target Start/End: Original strand, 9636046 - 9636118
Alignment:
Q  44 tgagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    |||||||||||||||||||||  |||||||| ||||| ||||||||  ||| ||||||||||| |||||||||    
T  9636046 tgagcaatgatatttgaacaaccatttggtacaacctatttgacaaccttcattttctctcttttcattggtc 9636118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 116
Target Start/End: Complemental strand, 24792634 - 24792563
Alignment:
Q  45 gagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    ||||||||||||||||||||  |||||||| ||||| ||||||||  ||| ||||||||||| |||||||||    
T  24792634 gagcaatgatatttgaacaaccatttggtacaacctatttgacaaccttcattttctctcttttcattggtc 24792563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 43 - 116
Target Start/End: Complemental strand, 7080696 - 7080625
Alignment:
Q  43 atgagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    ||||||||| ||||||||||||| |||||||||||||||| ||| |  ||| |||||||||||||| |||||||    
T  7080696 atgagcaataatatttgaacaatcatttggtataacctttatgata--attttttttctctcttcttattggtc 7080625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 44 - 116
Target Start/End: Complemental strand, 7144758 - 7144686
Alignment:
Q  44 tgagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    ||||||||||||||||| |||  ||||| || ||||||||||||||  ||||||||||||||| | |||||||    
T  7144758 tgagcaatgatatttgagcaaccatttgatacaacctttttgacaaccttctttttctctctttttattggtc 7144686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 45 - 113
Target Start/End: Complemental strand, 38387892 - 38387825
Alignment:
Q  45 gagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattg 113  Q
    ||||||||||||||||||||  |||||||| ||||||| ||||||| || |||||||||||||| ||||    
T  38387892 gagcaatgatatttgaacaaccatttggtacaacctttatgacaat-ttttttttctctcttcttattg 38387825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 116
Target Start/End: Complemental strand, 91397 - 91326
Alignment:
Q  45 gagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    ||||||||||||||||||||  ||||| || ||||| ||||||||  ||  ||||||||||| |||||||||    
T  91397 gagcaatgatatttgaacaaccatttgatacaacctatttgacaacctttcttttctctcttttcattggtc 91326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 116
Target Start/End: Original strand, 6865676 - 6865747
Alignment:
Q  45 gagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    ||||||| |||||||||||| |||||| ||||| || ||||||||  ||  ||||||||||| |||||||||    
T  6865676 gagcaataatatttgaacaactatttgatataatctatttgacaacttttattttctctcttttcattggtc 6865747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 103
Target Start/End: Complemental strand, 26627513 - 26627454
Alignment:
Q  44 tgagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctct 103  Q
    ||||||||||||||||||||| ||||||||| ||| ||  ||||||  ||||||||||||    
T  26627513 tgagcaatgatatttgaacaactatttggtacaactttcatgacaaccttctttttctct 26627454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 116
Target Start/End: Complemental strand, 19437441 - 19437368
Alignment:
Q  43 atgagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    ||||||| |||||||||||||| ||||| ||| ||| ||||||||||  ||  ||||||||||| | |||||||    
T  19437441 atgagcactgatatttgaacaactatttagtacaacatttttgacaacctttcttttctctcttttgattggtc 19437368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 116
Target Start/End: Complemental strand, 36624502 - 36624429
Alignment:
Q  43 atgagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    ||||| ||||||||||||||||  ||||| || ||  | ||||||||| ||| ||||||||||| |||||||||    
T  36624502 atgagtaatgatatttgaacaagcatttgatacaatttatttgacaattttcattttctctcttttcattggtc 36624429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 43 - 116
Target Start/End: Original strand, 16481 - 16554
Alignment:
Q  43 atgagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    |||||||||||||||| |||||  |||||||| ||| ||||||||||| ||||||||||||| | |||||||||    
T  16481 atgagcaatgatatttcaacaaccatttggtacaacttttttgacaatcttctttttctctcgtttcattggtc 16554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 43 - 116
Target Start/End: Complemental strand, 56363 - 56290
Alignment:
Q  43 atgagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    |||||||||||||||| |||||  |||||||| ||| ||||||||||| ||||||||||||| | |||||||||    
T  56363 atgagcaatgatatttcaacaaccatttggtacaacttttttgacaatcttctttttctctcgtttcattggtc 56290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 44 - 116
Target Start/End: Original strand, 8173200 - 8173272
Alignment:
Q  44 tgagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    |||||||||||||||||||||  |||||||||||||| ||||||||  ||  ||||||||||| |||||||||    
T  8173200 tgagcaatgatatttgaacaaccatttggtataacctatttgacaacctttcttttctctcttttcattggtc 8173272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 45 - 113
Target Start/End: Complemental strand, 32730071 - 32730003
Alignment:
Q  45 gagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattg 113  Q
    |||||||||||| |||||||  |||||||| ||||| |||||||| |||||||||||||||| ||||||    
T  32730071 gagcaatgatatatgaacaaccatttggtacaacctatttgacaacattctttttctctcttttcattg 32730003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 115
Target Start/End: Original strand, 16533148 - 16533219
Alignment:
Q  45 gagcaatgatatttgaacaatta-tttggtataacctttttgacaatattctttttctctcttctcattggt 115  Q
    ||||||||||||||||||||| | ||||||||||||| ||||||||  ||| ||||||||||| ||||||||    
T  16533148 gagcaatgatatttgaacaatcaatttggtataacctatttgacaactttccttttctctcttttcattggt 16533219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 116
Target Start/End: Original strand, 25561831 - 25561900
Alignment:
Q  45 gagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    |||||||||||||||||||| |||||||||  |||||| |||||| ||| |||||||||||||| |||||||    
T  25561831 gagcaatgatatttgaacaactatttggtaccacctttatgacaa-att-tttttctctcttcttattggtc 25561900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 116
Target Start/End: Original strand, 26101345 - 26101414
Alignment:
Q  45 gagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    |||||||||||||||||||| |||||||||  |||||| |||||| ||| |||||||||||||| |||||||    
T  26101345 gagcaatgatatttgaacaactatttggtaccacctttatgacaa-att-tttttctctcttcttattggtc 26101414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 103
Target Start/End: Original strand, 25567380 - 25567439
Alignment:
Q  43 atgagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctct 103  Q
    ||||||||||||||||||||||  |||||||| ||||||| ||||||| || |||||||||    
T  25567380 atgagcaatgatatttgaacaaccatttggtacaacctttatgacaat-ttttttttctct 25567439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 116
Target Start/End: Complemental strand, 21443870 - 21443799
Alignment:
Q  45 gagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    |||||||||||||||||||| ||||||||| || || || |||||  ||| |||| |||||| |||||||||    
T  21443870 gagcaatgatatttgaacaactatttggtacaatctattggacaaccttcattttatctcttttcattggtc 21443799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 32253957 - 32253892
Alignment:
Q  51 tgatatttgaacaattatttggtataacctttttgacaatattctttt-tctctcttctcattggt 115  Q
    |||||||||||||| ||||||||| ||| ||| ||||||| || |||| |||||||| ||||||||    
T  32253957 tgatatttgaacaactatttggtacaacttttgtgacaatttttttttctctctcttttcattggt 32253892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 44 - 116
Target Start/End: Original strand, 28676042 - 28676114
Alignment:
Q  44 tgagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    ||||||||||||||| |||||  |||| ||| ||||||||||||||  ||||||||||||||| |||||||||    
T  28676042 tgagcaatgatatttaaacaaccattttgtacaacctttttgacaaccttctttttctctcttttcattggtc 28676114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 116
Target Start/End: Complemental strand, 46567111 - 46567040
Alignment:
Q  45 gagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    ||||||||||||||||||||  |||||||| ||||| ||||||||  ||| ||||||||||| |||||||||    
T  46567111 gagcaatgatatttgaacaaccatttggtacaacctatttgacaaccttccttttctctcttttcattggtc 46567040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 49 - 116
Target Start/End: Complemental strand, 12639002 - 12638935
Alignment:
Q  49 aatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    |||||||||||||||| |||||| || ||||| ||||||||  ||| ||||||||||| |||||||||    
T  12639002 aatgatatttgaacaactatttgttacaacctatttgacaaccttcattttctctcttttcattggtc 12638935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 112
Target Start/End: Complemental strand, 37977297 - 37977230
Alignment:
Q  45 gagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcatt 112  Q
    ||||||||||||||||||||  |||||||| ||| ||||||||||| || | |||||||||| |||||    
T  37977297 gagcaatgatatttgaacaaccatttggtacaacatttttgacaattttttctttctctcttttcatt 37977230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 106
Target Start/End: Original strand, 23836988 - 23837050
Alignment:
Q  44 tgagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctctt 106  Q
    ||||||||||||||| |||||| |||||||| ||| | ||||| ||| |||||||||||||||    
T  23836988 tgagcaatgatatttaaacaatcatttggtacaacttatttgataattttctttttctctctt 23837050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 45 - 116
Target Start/End: Original strand, 18874812 - 18874884
Alignment:
Q  45 gagcaatgatatttgaacaattatttggt-ataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    ||||||||||||||||||||| ||||| | | ||| ||| ||||||  | |||||||||||||||||||||||    
T  18874812 gagcaatgatatttgaacaatcatttgctaacaacttttatgacaacctcctttttctctcttctcattggtc 18874884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 116
Target Start/End: Original strand, 16508870 - 16508937
Alignment:
Q  49 aatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    |||| |||||||||||| |||||||| |||||  |||||||  ||| ||||||||||| |||||||||    
T  16508870 aatgctatttgaacaataatttggtacaacctacttgacaaccttcattttctctcttttcattggtc 16508937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 103
Target Start/End: Complemental strand, 40847550 - 40847491
Alignment:
Q  44 tgagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctct 103  Q
    |||||||||||||||||||||  |||||  | ||||||||||||||  ||||||||||||    
T  40847550 tgagcaatgatatttgaacaaccatttgacacaacctttttgacaaccttctttttctct 40847491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 115
Target Start/End: Original strand, 30778157 - 30778223
Alignment:
Q  49 aatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggt 115  Q
    |||||||||||||||| |||||| |||||| ||| ||||||| |  |||||||||||| | ||||||    
T  30778157 aatgatatttgaacaactatttgatataacttttatgacaatttcttttttctctctttttattggt 30778223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 74
Target Start/End: Complemental strand, 54801179 - 54801150
Alignment:
Q  45 gagcaatgatatttgaacaattatttggta 74  Q
    ||||||||||||||||||||||||||||||    
T  54801179 gagcaatgatatttgaacaattatttggta 54801150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 116
Target Start/End: Complemental strand, 33438228 - 33438156
Alignment:
Q  44 tgagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    ||||||||||||||| |||||  |||||||| ||| ||||||| ||  ||| ||||||||||| | |||||||    
T  33438228 tgagcaatgatatttaaacaaccatttggtacaacttttttgataaccttcattttctctctttttattggtc 33438156  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 71
Target Start/End: Complemental strand, 38889061 - 38889033
Alignment:
Q  43 atgagcaatgatatttgaacaattatttg 71  Q
    |||||||||||||||||||||||||||||    
T  38889061 atgagcaatgatatttgaacaattatttg 38889033  T

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Target: scaffold0166 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 116
Target Start/End: Complemental strand, 35017 - 34946
Alignment:
Q  45 gagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    ||||||||||||||||||||  |||||||| ||||| ||||||||  ||| ||||||||||| |||||||||    
T  35017 gagcaatgatatttgaacaaccatttggtacaacctatttgacaaccttcattttctctcttttcattggtc 34946  T

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Target: scaffold0003 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 116
Target Start/End: Complemental strand, 337300 - 337229
Alignment:
Q  45 gagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    |||||||||||||||||||||||||||||| ||  ||||| ||||| |||||||||||| || | |||||||    
T  337300 gagcaatgatatttgaacaattatttggtacaatattttttacaattttctttttctctttttttattggtc 337229  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 47 - 116
Target Start/End: Original strand, 5167633 - 5167702
Alignment:
Q  47 gcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    ||||||||||||||||||  ||||||||||||||  |||||||  ||| ||||||||||| |||||||||    
T  5167633 gcaatgatatttgaacaaccatttggtataacctacttgacaaccttcattttctctcttttcattggtc 5167702  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 10288327 - 10288263
Alignment:
Q  52 gatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    |||||||||| |||||||||||| || || ||||||||| ||| ||||||||||| |||||||||    
T  10288327 gatatttgaataattatttggtacaatctatttgacaatcttccttttctctcttttcattggtc 10288263  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 116
Target Start/End: Original strand, 21805675 - 21805746
Alignment:
Q  45 gagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    |||||||||||||| |||||  |||||||| || |||||||||||  ||||| |||||||||| ||||||||    
T  21805675 gagcaatgatattttaacaaccatttggtacaatctttttgacaaccttcttattctctcttcccattggtc 21805746  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 116
Target Start/End: Original strand, 305855 - 305929
Alignment:
Q  43 atgagcaatgatatttgaacaattatttggtataacctttttgacaa-tattctttttctctcttctcattggtc 116  Q
    ||||||||||||||||||||||| |||||||| || |||| |||||| | || ||| |||||||||| |||||||    
T  305855 atgagcaatgatatttgaacaatcatttggtacaatctttatgacaacttttttttctctctcttcttattggtc 305929  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 43 - 116
Target Start/End: Complemental strand, 32128313 - 32128241
Alignment:
Q  43 atgagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    |||||||||||||||||||||| ||||||||| || |||| ||| ||| || |||||||||||| | |||||||    
T  32128313 atgagcaatgatatttgaacaactatttggtacaatctttatgataat-ttttttttctctctttttattggtc 32128241  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 113
Target Start/End: Complemental strand, 11126644 - 11126578
Alignment:
Q  46 agcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattg 113  Q
    |||||||||||||||||||| |||||||  ||||||| ||||||| || ||||||| |||||| ||||    
T  11126644 agcaatgatatttgaacaatcatttggttcaacctttatgacaat-ttatttttctttcttcttattg 11126578  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 116
Target Start/End: Complemental strand, 13553316 - 13553254
Alignment:
Q  54 tatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    |||||||||||  |||||||| ||||| ||||||||| ||  ||||||||||| |||||||||    
T  13553316 tatttgaacaaccatttggtacaacctatttgacaatctttcttttctctcttttcattggtc 13553254  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 115
Target Start/End: Complemental strand, 40951372 - 40951302
Alignment:
Q  45 gagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggt 115  Q
    |||||||||||| |||||||  ||| |||| ||||| ||||||||  ||| ||||||||||| ||||||||    
T  40951372 gagcaatgatatatgaacaaccattaggtacaacctatttgacaaccttccttttctctcttttcattggt 40951302  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 116
Target Start/End: Complemental strand, 3091917 - 3091852
Alignment:
Q  51 tgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    ||||||||||||||||||||| || ||| ||| ||||||  |  |||||||||||| |||||||||    
T  3091917 tgatatttgaacaattatttgatacaacttttgtgacaacttcttttttctctcttttcattggtc 3091852  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 19637409 - 19637364
Alignment:
Q  45 gagcaatgatatttgaacaattatttggtataacctttttgacaat 90  Q
    ||||||||||||||||||||  |||||||| ||||||| |||||||    
T  19637409 gagcaatgatatttgaacaaccatttggtacaacctttatgacaat 19637364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 116
Target Start/End: Original strand, 19668078 - 19668147
Alignment:
Q  47 gcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    ||||||||||||||||||  ||||| || ||||| ||||| ||  ||| ||||||||||| |||||||||    
T  19668078 gcaatgatatttgaacaaccatttgatacaacctatttgataaccttccttttctctcttttcattggtc 19668147  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 19836002 - 19835957
Alignment:
Q  45 gagcaatgatatttgaacaattatttggtataacctttttgacaat 90  Q
    ||||||||||||||||||||  |||||||| ||||||| |||||||    
T  19836002 gagcaatgatatttgaacaaccatttggtacaacctttatgacaat 19835957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 116
Target Start/End: Complemental strand, 30856986 - 30856918
Alignment:
Q  48 caatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggtc 116  Q
    ||||||||| |||||||  |||||||| ||  | ||||||||  ||||||||||||||| |||||||||    
T  30856986 caatgatatatgaacaaccatttggtacaatttatttgacaaccttctttttctctcttttcattggtc 30856918  T

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Target: scaffold0002 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 115
Target Start/End: Complemental strand, 440900 - 440830
Alignment:
Q  45 gagcaatgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggt 115  Q
    ||||||||||||||||||||  |||||||| || || ||||||||| ||  ||||||||||| ||||||||    
T  440900 gagcaatgatatttgaacaaccatttggtacaatctatttgacaatctttcttttctctcttttcattggt 440830  T

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Target: scaffold0115 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 115
Target Start/End: Original strand, 15084 - 15147
Alignment:
Q  51 tgatatttgaacaattatttggtataacctttttgacaatattctttttctctcttctcattggt 115  Q
    |||||||||||||| ||||||||| ||| ||| ||||||  |||||||||||| || ||||||||    
T  15084 tgatatttgaacaactatttggtacaacttttgtgacaa-cttctttttctcttttttcattggt 15147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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