View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16428_low_3 (Length: 432)
Name: NF16428_low_3
Description: NF16428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16428_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 388; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 5017732 - 5017317
Alignment:
| Q |
1 |
gagttttaaaagtttatacaaaatgatatatcaatcagtatagatcattatgttcaatcctggatatcccagtaaggacaagtcatctgaagagaaaaag |
100 |
Q |
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| T |
5017732 |
gagttttaagagtttatacaaaatgatatatcaatcagtatagatcattatgttcaatcctggaaatcccagtaaggacaagtcatctgaagagaaaaag |
5017633 |
T |
|
| Q |
101 |
ttgcatacaaacctggaaatccaggaaatgtgtatccagcatggtagaacatattaggaactaagttatgtgttgctgtggtagtagcttccgatgcaac |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5017632 |
ttgcatacaaacctggaaatccgggaaatgtgtatccagcatggtagaacatattaggaactaagttatgtgttgctgtggtagtagcttccgatgcaac |
5017533 |
T |
|
| Q |
201 |
aggaaatgcttgccagccattaccattgaatgtctgaaaaatgggagggatggttgctccgaacagctgagtcggctgaaatacctgagccccttgttga |
300 |
Q |
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| T |
5017532 |
aggaaatgcttgccagccattaccattgaatgtctgaaaaatgggagggatgtttgctccgaacagctgagtcggctgaaatacctgcgccccttgttga |
5017433 |
T |
|
| Q |
301 |
ggatatggtaactgctgctgccatggtgcttgagtggcagtctgaggaaaacaaggccactgaaacattgatggttgttgaggatttgagttaggcacat |
400 |
Q |
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| T |
5017432 |
ggatatggtaactgctgctgccatggtgcttgagtggcagtctgaggaaaacaaggccaatgaaacattgatggttgttgaggatttgagttaggcacat |
5017333 |
T |
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| Q |
401 |
tgtcaggcgaagaatt |
416 |
Q |
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| T |
5017332 |
tgtcaggcgaataatt |
5017317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 208 - 260
Target Start/End: Complemental strand, 5005605 - 5005553
Alignment:
| Q |
208 |
gcttgccagccattaccattgaatgtctgaaaaatgggagggatggttgctcc |
260 |
Q |
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| T |
5005605 |
gcttgccagccattaacattgaatgtctgaaaaatgggagggatatttgctcc |
5005553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 127
Target Start/End: Complemental strand, 5005661 - 5005614
Alignment:
| Q |
80 |
aagtcatctgaagagaaaaagttgcatacaaacctggaaatccaggaa |
127 |
Q |
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| T |
5005661 |
aagtcatatgaagagaaaaagttccatacatacctggaaagccaggaa |
5005614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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