View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16428_low_5 (Length: 365)
Name: NF16428_low_5
Description: NF16428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16428_low_5 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 16 - 365
Target Start/End: Complemental strand, 41366924 - 41366574
Alignment:
| Q |
16 |
catctcagacatcgtccataacatagcttccgaagatgattgagtgccaccaacaaacatgtcctgcaaatggattaacggtagccttgtctaatatcaa |
115 |
Q |
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| T |
41366924 |
catctcagacatcgtccataacacagcttcagaagatgattgagtgccaccaacaaacatgtcctgcaaatggattaacggtagccttgtctaatatcaa |
41366825 |
T |
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| Q |
116 |
accaaaatgaatttcttctatacaagctcaacnnnnnnnnntg-ttattaatttgatgttccctccaaattactatactggaaattttacttttaagcaa |
214 |
Q |
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| T |
41366824 |
accaaaatgaatttcttctatacaaactcaacaaaaaaaaaaaattattaatttgatgttccctccaaattactatactggaaattttacttttaaacaa |
41366725 |
T |
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| Q |
215 |
atgaaaaattatgaactatcctttaaattgtgaaaataaatgtgttaacatattcgatttgttgactaacctggatgaccgattttatattgtcgtcggt |
314 |
Q |
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| T |
41366724 |
atgaaaaattatgaactatcctttaaattgtgaaaataaatgtgttaacatattcgatttgttgactaacctggatgaccgattttatattgtcgtcggt |
41366625 |
T |
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| Q |
315 |
caagggatgttgtgagtgatttacacgttgaatcttgagaagaacatctac |
365 |
Q |
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| T |
41366624 |
caagggatgttgtgagtgatttacacgttgaatcttgagaagaacatctac |
41366574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 273 - 365
Target Start/End: Complemental strand, 41324578 - 41324483
Alignment:
| Q |
273 |
ttgttgactaacctggatgaccgattttatattgtcgtcggtcaagggatgttgtgagtgat---ttacacgttgaatcttgagaagaacatctac |
365 |
Q |
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| T |
41324578 |
ttgttgactaacctggatgattgactttatattgtcatcggttaaaggatgttgtgagtgataattttcctgttgaatcttgagaagaacatctac |
41324483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 273 - 365
Target Start/End: Complemental strand, 41316509 - 41316414
Alignment:
| Q |
273 |
ttgttgactaacctggatgaccgattttatattgtcgtcggtcaagggatgttgtgagtgat---ttacacgttgaatcttgagaagaacatctac |
365 |
Q |
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| T |
41316509 |
ttgtggactaacctggatgattgattttatattgtcatcagttaaaggatgttgtgagtgataattttcctgttgaatcttgagaagaacatctac |
41316414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 278 - 365
Target Start/End: Complemental strand, 41328471 - 41328381
Alignment:
| Q |
278 |
gactaacctggatgaccgattttatattgtcgtcggtcaagggatgttgtgagtgat---ttacacgttgaatcttgagaagaacatctac |
365 |
Q |
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| T |
41328471 |
gactaacctggatgattgatttcatattgtcatcggttaaaggatgttctgagtgataattttcctgttgaatcttgagaagaacatctac |
41328381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 279 - 362
Target Start/End: Complemental strand, 41337412 - 41337326
Alignment:
| Q |
279 |
actaacctggatgaccgattttatattgtcgtcggtcaagggatgttgtgagtg---atttacacgttgaatcttgagaagaacatc |
362 |
Q |
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| T |
41337412 |
actaacctgaatgactgattttatattttcatcagtcaagggttgttgtgagtgaacattttcatgttgaaccttgagaagaacatc |
41337326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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