View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16428_low_9 (Length: 251)
Name: NF16428_low_9
Description: NF16428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16428_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 139; Significance: 8e-73; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 38341664 - 38341522
Alignment:
| Q |
1 |
aggctgttgaggttgatgatgtcctcgaccctccttatgagtttgatggagatgtacttgaagaaaacgatgatgaggacgaagtggattattcattcaa |
100 |
Q |
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| T |
38341664 |
aggctgttgaggttgatgatgtcctcgaccctccttatgagtttgatggagatgtacttgaagaaaacgatgatgaggacgaagtggattattcattcaa |
38341565 |
T |
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| Q |
101 |
taagaaaagagcatcgacgagttcaaagaagaaatcagtggct |
143 |
Q |
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| T |
38341564 |
tatgaaaagagcatcgacgagttcaaagaagaaatcagtggct |
38341522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 38333911 - 38333769
Alignment:
| Q |
1 |
aggctgttgaggttgatgatgtcctcgaccctccttatgagtttgatggagatgtacttgaagaaaacgatgatgaggacgaagtggattattcattcaa |
100 |
Q |
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| T |
38333911 |
aggctgttaacggtgatgatgtcctcgaccctccttatgttattgatggagatgaacttgaagaaaatgacgatgatgacgacgtggattattcatccaa |
38333812 |
T |
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| Q |
101 |
taagaaaagagcatcgacgagttcaaagaagaaatcagtggct |
143 |
Q |
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| T |
38333811 |
gaagacaagcgcatcaacaagttcaaagaagaaatcagtggct |
38333769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 38341488 - 38341427
Alignment:
| Q |
177 |
ggctaatgatgatttagaaaagggtactgaagaacctcctaaaaagttcccgcattcatctc |
238 |
Q |
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| T |
38341488 |
ggctaatgatgatttagaaaagggtactgaagaacctcctaaaaagttcccgcattcatctc |
38341427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 38333736 - 38333675
Alignment:
| Q |
177 |
ggctaatgatgatttagaaaagggtactgaagaacctcctaaaaagttcccgcattcatctc |
238 |
Q |
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| T |
38333736 |
ggctaatgatgattcagaaaaggttactgaagaacctcctaaaaagttcccccatgcatctc |
38333675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 135
Target Start/End: Original strand, 25379342 - 25379419
Alignment:
| Q |
58 |
ttgaagaaaacgatgatgaggacgaagtggattattcattcaataagaaaagagcatcgacgagttcaaagaagaaat |
135 |
Q |
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| T |
25379342 |
ttgaagaaaatgatgacgaggacgaagtggataattcatctaagaagaaaagagcattaacaaattcaaaaaagaaat |
25379419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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