View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16429_high_2 (Length: 362)
Name: NF16429_high_2
Description: NF16429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16429_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 118 - 334
Target Start/End: Original strand, 46091924 - 46092140
Alignment:
| Q |
118 |
acatcatccaaaagtgggaagtttacattcttaaattgctttgatatgggctctggaactttagcatgtggggtcaaggaaagtgtgaagctctatgcta |
217 |
Q |
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| T |
46091924 |
acatcatccaaaagtgggaagtttacattcttaaattgctttgatatgggctctggaactttagcatgtggggtcaaggaaagtgtgaagctctatgcta |
46092023 |
T |
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| Q |
218 |
acaatattagatcttctcatgttgaaaaagcaagagataatgcaatcctatctgctcttgtagatgctgcttcacagggtatgccaccaactgattcaga |
317 |
Q |
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| T |
46092024 |
acaatattagatcttctcatgttgaaaaagcaagagataatgcaatcctatctgctcttgtagatgctgcttcacagggtatgccaccaactgattcaga |
46092123 |
T |
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| Q |
318 |
aaaatatgctcagaaag |
334 |
Q |
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| T |
46092124 |
aaaatatgctcagaaag |
46092140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 121 - 333
Target Start/End: Original strand, 46086824 - 46087036
Alignment:
| Q |
121 |
tcatccaaaagtgggaagtttacattcttaaattgctttgatatgggctctggaactttagcatgtggggtcaaggaaagtgtgaagctctatgctaaca |
220 |
Q |
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| T |
46086824 |
tcatccaaaagtgggaagtttacattattaaattgctttgatttgggctctggaagtttagcatgtggggttaaagaaagtgtgaagctctatgttaaca |
46086923 |
T |
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| Q |
221 |
atattagatcttctcatgttgaaaaagcaagagataatgcaatcctatctgctcttgtagatgctgcttcacagggtatgccaccaactgattcagaaaa |
320 |
Q |
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| T |
46086924 |
atattagatctgctcatgttgaaaaagcaagacatgatgcaatccaatctgctcttgttgatgctgcttcacagggtatgtcgccaattgtttcagaaaa |
46087023 |
T |
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| Q |
321 |
atatgctcagaaa |
333 |
Q |
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| T |
46087024 |
acatgcgcagaaa |
46087036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 46091200 - 46091304
Alignment:
| Q |
12 |
cagaacctgtggttacgatggaatctcatccaagtgcatatatttcaaaactttattaaaggaggtctagagtcaattcattgatgcaatatcttgtatg |
111 |
Q |
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| T |
46091200 |
cagaacctatggttatgatggaatctcatccaagtgcatatatttcaaaactttattaaaggaggtctagagtcaattcactgttgcaatatcttgtatg |
46091299 |
T |
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| Q |
112 |
agatg |
116 |
Q |
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|||| |
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| T |
46091300 |
tgatg |
46091304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 121 - 251
Target Start/End: Original strand, 37476517 - 37476647
Alignment:
| Q |
121 |
tcatccaaaagtgggaagtttacattcttaaattgctttgatatgggctctggaactttagcatgtggggtcaaggaaagtgtgaagctctatgctaaca |
220 |
Q |
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|||||| | ||||| ||||| ||||| ||||| || ||||| ||||| |||||||| || ||||||| ||||| ||| | || || |||||| | ||| |
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| T |
37476517 |
tcatcccagagtggaaagttcacattattaaactgttttgacatgggttctggaacgttggcatgtgctgtcaaagaaggcgtcaaactctatttttaca |
37476616 |
T |
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| Q |
221 |
atattagatcttctcatgttgaaaaagcaag |
251 |
Q |
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| T |
37476617 |
gtattagatctactcatgttgaaaaagcaag |
37476647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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