View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16429_high_3 (Length: 350)
Name: NF16429_high_3
Description: NF16429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16429_high_3 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0224 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 8 - 350
Target Start/End: Complemental strand, 42932470 - 42932128
Alignment:
| Q |
8 |
tccaccagactagtattcgccaatgtttctaagacatacattctcttcttgttgggcattgagttatgtgccattatcacatttgcagaaacagttccaa |
107 |
Q |
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| T |
42932470 |
tccaccaaactagtattcgtcaatgtttctaagacatacattctcttcttgttgggcattgagttatgtgccattatcacatttgcagaaacagttccaa |
42932371 |
T |
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| Q |
108 |
acctgattaaggatgaagcaaccaactttagttattgtgaaaatgataacaggataagcatcacgacgcaattagaaacatgatgatttaaaacttacga |
207 |
Q |
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| T |
42932370 |
acctgattaaggatgaagcaaccgactttagttattgttaaaatgataacaggataagcatcacgacgcaattagaaacatgatgatttaaaacttacga |
42932271 |
T |
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| Q |
208 |
acaatctgcaggataaccattgatttctctgcaaccccctttagggcatagatacctaaaatcattcaatggatattgatattagttgagaaaaacacct |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
42932270 |
acaatctgcaggataaccattgatttctctgcaaccccctttagggcaaagatacctaaaatcattcaatggatattgatattagttgaggaaaacacct |
42932171 |
T |
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| Q |
308 |
actttatgcatcacatgaaaagtttattaggcaaggtacttac |
350 |
Q |
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| T |
42932170 |
actttatgcatcacatgaaaagtttattaggcaaggtacttac |
42932128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0224 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 14301 - 14363
Alignment:
| Q |
8 |
tccaccagactagtattcgccaatgtttctaagacatacattctcttcttgttgggcattgag |
70 |
Q |
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| T |
14301 |
tccaccaaactagtattcgtcaatgtttctaagacatacattctcttcttgttaggcattgag |
14363 |
T |
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