View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16429_high_8 (Length: 315)
Name: NF16429_high_8
Description: NF16429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16429_high_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-172; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 37444053 - 37443745
Alignment:
| Q |
1 |
ctaaaaagcgcttatctcatttagtaagctcttccatattccctcgcgtagacggtgcttcatagtattccactagttacaatgtttttattttccttac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37444053 |
ctaaaaagcgcttatctcatttagtaagctcttccatatgccctcgcgtagacggtgcttcatagtattccactagttacaatgtttttattttccttac |
37443954 |
T |
|
| Q |
101 |
ccctccctttctatatctgcttcatcctttcaatgaagtatccctctgtagatggagatacattgcatggctatgtgtcgtccgttatgaagtacttaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37443953 |
ccctccctttctatatctgcttcatcctttcaatgaagtatccctctgtagatggagatacattgcatggctatgtgtcgtccgttatgaagtacttaca |
37443854 |
T |
|
| Q |
201 |
gagacacaaacacctaatacaaaactgacactgacatagcataaaaatttgagaaaataaaagtaattgaatcgaactacacacattagtgttggacacc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37443853 |
gagacacaaacacctaatacaaaactgacactgacatagcataaaaatttgagaaaataaaagtaattgaatcgaactacacacattagtgttggacacc |
37443754 |
T |
|
| Q |
301 |
gagttggac |
309 |
Q |
| |
|
||||||||| |
|
|
| T |
37443753 |
gagttggac |
37443745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 173 - 283
Target Start/End: Complemental strand, 37708076 - 37707964
Alignment:
| Q |
173 |
atgtgtcgtccgttatgaagtacttacagagacacaaacacctaatacaaaactgacactgacatagcataaaaatttgagaaaat--aaaagtaattga |
270 |
Q |
| |
|
|||| ||||| |||||||||||| |||||||||||||||||| ||||||| | |||||||||||||| ||||||| |||||||||| |||||||||||| |
|
|
| T |
37708076 |
atgtttcgtcggttatgaagtacatacagagacacaaacaccgaatacaacattgacactgacatagtataaaaaattgagaaaataaaaaagtaattga |
37707977 |
T |
|
| Q |
271 |
atcgaactacaca |
283 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
37707976 |
atcgaacaacaca |
37707964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University