View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1642R-Insertion-10 (Length: 788)
Name: NF1642R-Insertion-10
Description: NF1642R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1642R-Insertion-10 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 548 - 788
Target Start/End: Complemental strand, 34621455 - 34621215
Alignment:
| Q |
548 |
tgtttttccttctctctcaatgaactcctctttctctcacttcgagcaccctttcgtcctcctctaagacaacctttcccgccgccacgaccaccgcctc |
647 |
Q |
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| T |
34621455 |
tgtttttctttctctctcaatgaactcctctttctctcacttcgagcaccctttcttcttcctctaagacaacctctcccgccgccgcgaccacaacctc |
34621356 |
T |
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| Q |
648 |
tcaccgaccattttctctctgacaccactcgtccgctgctctctcgccgatctcagttccgttcatcgtcctccaatctcctctcacctctgtcctctgt |
747 |
Q |
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| T |
34621355 |
tcaccggccgttttctctctgacaccactcgtccactgctctctcgccgatctcagttccgttcatcgtcctccattctcctctcacctctgtcctctgt |
34621256 |
T |
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| Q |
748 |
tctcctcacaatacattgttcatggtttaaatttttccaga |
788 |
Q |
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| T |
34621255 |
tctcctcacaatacactgttcatggtttaaaattttccaga |
34621215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 428 - 511
Target Start/End: Complemental strand, 34621575 - 34621492
Alignment:
| Q |
428 |
aaaagattggtagaccactcctaatacatacacccctgtatcactcctatttggcatatattttttgtctactcattttcaacc |
511 |
Q |
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| T |
34621575 |
aaaagattgatagaccactcctaacatatacacccctgtaccactcctacttggcatatattttttgtctactcattttcaacc |
34621492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 137; Significance: 4e-71; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 98 - 253
Target Start/End: Complemental strand, 13739913 - 13739757
Alignment:
| Q |
98 |
tggcaaaatgaattaaagatatgactggttggttggattctgaagcaaccatgtgtcacatggaacaaggaagagtcagcaaccttggtaatggatagat |
197 |
Q |
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| T |
13739913 |
tggcaaaatgaattaaagatatgactggttggttggattctgaagcaaccatgtgtcacatggaacaaggaagagtcagcaaccatggtaatggatagac |
13739814 |
T |
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| Q |
198 |
tgatgaaatgcagct-caaaaatggatggtaattggtaaagatgtttcacattatat |
253 |
Q |
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| T |
13739813 |
tgatgaaatgcagctaaaaaaatggatggtaattggtaaagatgtttcacattatat |
13739757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 295 - 406
Target Start/End: Complemental strand, 13739702 - 13739587
Alignment:
| Q |
295 |
ttacttagatgttcaattttctaacct-aaaaactactagggttaaaactcttttggaaaaactttggtattatnnnnnnngttgcact---ttagatca |
390 |
Q |
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| T |
13739702 |
ttacttagatgttcaattttctaaccttaaaaactactagggttaaaactcttttagataaactttggtattataaaaaaagttgcactttattagatca |
13739603 |
T |
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| Q |
391 |
aaatgaaataatgtta |
406 |
Q |
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| T |
13739602 |
aaatgaaataatgtta |
13739587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 13739998 - 13739948
Alignment:
| Q |
8 |
aaatttaagggtaggagcaaatctatgaaaatctgtgtttcacatatgaca |
58 |
Q |
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| T |
13739998 |
aaatttaagggtaggagcaaatctatgaaaatctgtgtttcacaaatgaca |
13739948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 1e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 608 - 786
Target Start/End: Original strand, 44971735 - 44971921
Alignment:
| Q |
608 |
cctctaagacaacctttcccgccgccacgaccaccgcctctcaccgaccattttctctctgaca-------ccactcgtccgctgctctctcgccgatct |
700 |
Q |
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| T |
44971735 |
cctcttagacaacctctcccgccgctacaaccaccgcctctcaccggccgttttctctctcacatctcacaccactcatccactgctctcttgtcgatct |
44971834 |
T |
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| Q |
701 |
cagttccgttcatcgtcctccaatctcctctcacctctgtcctctgttctcctcacaatacattgttcatg-gtttaaatttttcca |
786 |
Q |
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| T |
44971835 |
tagttccgttcgtcgtcctccattctcctctcacctttgtcctctgttctcctcacaagacactgtttatgcgtttaaatttttcca |
44971921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 724 - 783
Target Start/End: Complemental strand, 47832441 - 47832381
Alignment:
| Q |
724 |
tctcctctcacctctgtcctctgttctcctcacaatacattgttcat-ggtttaaattttt |
783 |
Q |
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| T |
47832441 |
tctcctttcacctccgtcctctgttctcctttcaatatattgttcatgggtttaaattttt |
47832381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 665 - 722
Target Start/End: Original strand, 31647912 - 31647969
Alignment:
| Q |
665 |
tctgacaccactcgtccgctgctctctcgccgatctcagttccgttcatcgtcctcca |
722 |
Q |
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| T |
31647912 |
tctgacaccactcgtccgctgctctctcgtcaatcttagttccgttcatcgtcctcca |
31647969 |
T |
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