View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1642R-Insertion-12 (Length: 536)
Name: NF1642R-Insertion-12
Description: NF1642R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1642R-Insertion-12 |
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Alignment Details
Target: chr1 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 9 - 535
Target Start/End: Original strand, 42597480 - 42598010
Alignment:
| Q |
9 |
caagctacaaaacaaaccatacctattatgattccttttgcctaaatttttaaatgttattgacattgtacattagctacccttcactattttaaccttt |
108 |
Q |
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| T |
42597480 |
caagctacaaaacaaaccatacctattatgattccttttgcctaaatttttaaatgttattgacattgtacattagctacccttcactattttaaccttt |
42597579 |
T |
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| Q |
109 |
atatatatagaacatcaacctttgctcctacccttcaattatacctctccacttc----tataaatgtgatgaaatgaaggtcaagtttttcaaaagttg |
204 |
Q |
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| T |
42597580 |
atatatatagaacatcaacctttgctcctacccttcaattatacctctccacttccatctataaatgtgatgaaatgaaggtcaagtttttcaaaagttg |
42597679 |
T |
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| Q |
205 |
ttgtctaagagaattttctaaattcagaaaggtaataagagttagttttctcaaatgtgcaattagggcttcattttgttcctcatcacaacaaaagtca |
304 |
Q |
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| T |
42597680 |
ttgtctaagagaattttctaaattcagaaaggtaataagagttagttttctcaaatgtgcaattagggcttcattttgttcctcatcacaacaaaagtca |
42597779 |
T |
|
| Q |
305 |
aacttacacatacccaaagatgtgccaaaaggacacttagttgtctatgttggtgaggattgcaagagatttgtcatcaaggttggcacactcaatcatc |
404 |
Q |
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| T |
42597780 |
aacttacacatacccaaagatgtgccaaaaggacacttagttgtctatgttggtgaggattgcaagagatttgtcatcaaggttggcacactcaatcatc |
42597879 |
T |
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| Q |
405 |
cacctttcaaggctttgttggatcatgcagaagatgcttttggatttactaatggttctaaactcctaattccttgcaatgagaatgttttccttaacat |
504 |
Q |
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| T |
42597880 |
cacctttcaaggctttgttggatcatgcagaagatgcgtttggatttactaatggttctaaactcctaattccttgcaatgagaatgttttccttaacat |
42597979 |
T |
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| Q |
505 |
tcttcataatgccggtgaatggtgatcttgt |
535 |
Q |
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| T |
42597980 |
tcttcataatgccggtgaatggtaatcttgt |
42598010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 323 - 426
Target Start/End: Complemental strand, 41011072 - 41010969
Alignment:
| Q |
323 |
gatgtgccaaaaggacacttagttgtctatgttggtgaggattgcaagagatttgtcatcaaggttggcacactcaatcatccacctttcaaggctttgt |
422 |
Q |
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| T |
41011072 |
gatgttccaaagggtcacttggttgtgtatgtaggtgagaactataagagatttgtcatcaagattggattactccatcatccacttttcaaggccttgt |
41010973 |
T |
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| Q |
423 |
tgga |
426 |
Q |
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|||| |
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| T |
41010972 |
tgga |
41010969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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