View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1642R-Insertion-13 (Length: 497)
Name: NF1642R-Insertion-13
Description: NF1642R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1642R-Insertion-13 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 265 - 497
Target Start/End: Complemental strand, 2782520 - 2782288
Alignment:
| Q |
265 |
tgttgttggtaacagcaacacagtggttacaaagggagatagtgggtacaaacttgggtccagtgccatgccaaggtgttaaagattgacaaatatggca |
364 |
Q |
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| T |
2782520 |
tgttgttggtaacagcaacacagtggttacaaagggagatagtgggtacaaacttgggtccagtgccatgccaaggtgttaaagattgacaaatatggca |
2782421 |
T |
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| Q |
365 |
gagaagaaacctgtgatgctttgtgactatgaagtttgcagtgtgaaccttagcatcacattcccaacaaaggcttgcctgatctgattcacagaacaac |
464 |
Q |
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| T |
2782420 |
gagaagaaacctgtgatgctttgtgactatgaagtttgcagtgtgaaccttagcatcacattcccaacaaaggcttgcttgatctgattcacagaacaac |
2782321 |
T |
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| Q |
465 |
tttgctggacttttgcacaactcacatttcttc |
497 |
Q |
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| T |
2782320 |
tttgctggacttttgcacaactcacatttcttc |
2782288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 8 - 206
Target Start/End: Complemental strand, 2782774 - 2782576
Alignment:
| Q |
8 |
actaattttgttacttaccaatctatgaatctaaaacaaaaatcctcaaattaatttagcacacaagaaaaatgaagagaggaagaaaaattacaggata |
107 |
Q |
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| T |
2782774 |
actaattttgttacttaccaatctatgaatctaaaacaaaaatcctcaaattaatttagcacacaagaaaaatgaagagaggaagaaaaattacaggaaa |
2782675 |
T |
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| Q |
108 |
tatatttatactagttggtagcattagtttgcactatttgaagaacaagaagaaactggtggtggagttgtagatttccatggaaccacttgattttct |
206 |
Q |
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| T |
2782674 |
tatatttatactagttggtagcattagtttgcactatttgaagaacaagaagaaactggtggtggagttgtagatttccatggaaccacttgattttct |
2782576 |
T |
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