View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1642R-Insertion-16 (Length: 137)
Name: NF1642R-Insertion-16
Description: NF1642R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1642R-Insertion-16 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 107; Significance: 5e-54; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 5e-54
Query Start/End: Original strand, 8 - 137
Target Start/End: Original strand, 7895957 - 7896087
Alignment:
| Q |
8 |
aatagtggacttcttgcttcaaaattcaccctcggcgaaattcgactacatatattgctctaggaaacgtc-ttagagaaatgcatctataattggtttg |
106 |
Q |
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| T |
7895957 |
aatagtggatttcttgcttcaaaattcacccttggcgaaattcgactacatatattgctctaggaaacctctttagagaaatgcatctataattggtttc |
7896056 |
T |
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| Q |
107 |
tgtttttgtttccttctctgtttaccaattg |
137 |
Q |
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| T |
7896057 |
tgtttttgtttccttctctgtttaccaattg |
7896087 |
T |
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Target: chr5; HSP #2
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 8 - 103
Target Start/End: Complemental strand, 7975791 - 7975696
Alignment:
| Q |
8 |
aatagtggacttcttgcttcaaaattcaccctcggcgaaattcgactacatatattgctctaggaaacgtcttagagaaatgcatctataattggt |
103 |
Q |
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| T |
7975791 |
aatagtggacttcttgcttcaaaattcaccttcggcaaaagttgactacatagatttctcaagtctacctcttagagaaatacatatataattggt |
7975696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 37
Target Start/End: Complemental strand, 44500246 - 44500217
Alignment:
| Q |
8 |
aatagtggacttcttgcttcaaaattcacc |
37 |
Q |
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| T |
44500246 |
aatagtggacttcttgcttcaaaattcacc |
44500217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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