View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1642R-Insertion-3 (Length: 1013)
Name: NF1642R-Insertion-3
Description: NF1642R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1642R-Insertion-3 |
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Alignment Details
Target: chr1 (Bit Score: 651; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 651; E-Value: 0
Query Start/End: Original strand, 217 - 972
Target Start/End: Original strand, 39998505 - 39999247
Alignment:
| Q |
217 |
acaaaaataaataaattcaaatttgtatccgaatacatcaattttgtttgactttttatgcttatttttaaagccggggtaatactagtctatcaaaacc |
316 |
Q |
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| T |
39998505 |
acaaaaataaataaattcaaatttgtatccgaatacatcaattttgtttgactttttatgcttatttttaaagccggggtaatactagtctatcaaaacc |
39998604 |
T |
|
| Q |
317 |
accaccgcgtaatgtgaattatgtgaagttttctgagccattattgtagtagttcgtatatctatagcataatcctattttttattttgttaagggggaa |
416 |
Q |
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| T |
39998605 |
accaccgcgtaatgtgaattatgtgaagttttctgagccattattgtagtagttcgtatatctatagcaaaatcctattttttattttgttaagggggaa |
39998704 |
T |
|
| Q |
417 |
gctgttaggccgaattacaagcgagcatgatgaagaaaataaattttagcaacatactttcataaaagattaacacaacctggggagggtggagtaaaaa |
516 |
Q |
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| T |
39998705 |
gctgttaggccgaattacaagcgagcatgatgaagaaaataaa------------------ataaaagattaacacaacctggggagggtggagtaaaaa |
39998786 |
T |
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| Q |
517 |
gcatcagctatgtgctatcactacaatatgaaggttaatatcagttatgtctaagcagatacctatcccagactaagagcaacaaactccaagagttagg |
616 |
Q |
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| T |
39998787 |
gcatcagctatgtgctatcactacaatatgaaggttaatatcagttatgtctaagcagatacctatcccagactaagagcaacaaactccaagagttagg |
39998886 |
T |
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| Q |
617 |
tttggtggtaaaatgtaaaatgacatgtcttggatccggaggtttcagatttgagtcagttatacctttgaagattggaagtgctctttaagggcaaagg |
716 |
Q |
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| T |
39998887 |
tttggtggtaaaatgtaaaatgacaggtcttggatccggaggtttcagatttgagtcagttatacctttgaagattggaagtgctctttaagggcaaagg |
39998986 |
T |
|
| Q |
717 |
tctttcctaccttatactggtgcatcttcccctcatcctaaatttatttcaggcacattgaattagctggttgaagaataaattaattttatgtttgtaa |
816 |
Q |
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| T |
39998987 |
tctttcctaccttatactggtgcatcgtcccctcatcctaaatttatttcaggcacattgaattagctggttgaagaataaattaattttatgtttgtaa |
39999086 |
T |
|
| Q |
817 |
agggcaggactggagtgcccctcaccctagacttttttattatgaaaaaatagtagggcatgcatgctattga-gtctagcgcaaataattggtacacat |
915 |
Q |
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| T |
39999087 |
agggcaggactggagtgcccctcaccctagacttttttattatgaaaaaatagtaggacatgcatgctattgaggtctagcgcaaataattggtacacat |
39999186 |
T |
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| Q |
916 |
ggtgtatgagtg-tgtaaaactcggatagcaa--ttgattc-tactgataaaaaagtttag |
972 |
Q |
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| T |
39999187 |
ggtgtatgagtgttgtaaaactcggatagcaaatttgattcttactgataaaaaagtttag |
39999247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 164; E-Value: 4e-87
Query Start/End: Original strand, 9 - 211
Target Start/End: Original strand, 39998250 - 39998453
Alignment:
| Q |
9 |
attaaaggatgtgaagaatgatttgttggatattacagtttcattggtttaccaaaactattactaataccattttgtcctatatagcaatttggatcct |
108 |
Q |
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| T |
39998250 |
attaaaggatgtgaagaatgatttgttggatattacagtttcattggtttaccaaaactattactat---cattttgtcctatatagcaatttgaatcct |
39998346 |
T |
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| Q |
109 |
atgcaagttgcatcctgtcttcttttgaagacaccat----gctggctgagattgtcttttttcatggtcatattcatctctacgagccatcatgcattg |
204 |
Q |
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||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39998347 |
atgtaagttgcatcctgtcttcttttgaagacaccatgctggctggctgagattgtcttttttcatggtcatattcatctctacgagccatcatgcattg |
39998446 |
T |
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| Q |
205 |
aaagaga |
211 |
Q |
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| T |
39998447 |
aaagaga |
39998453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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