View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1642R-Insertion-5 (Length: 940)
Name: NF1642R-Insertion-5
Description: NF1642R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1642R-Insertion-5 |
 | |
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| [»] chr5 (9 HSPs) |
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| [»] chr3 (6 HSPs) |
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| [»] chr6 (4 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr7 (6 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0479 (1 HSPs) |
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| [»] chr8 (3 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 464; Significance: 0; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 458 - 940
Target Start/End: Original strand, 33811292 - 33811774
Alignment:
| Q |
458 |
tgttggtttccagccacaatagtaacaataatgcatcaatgggaaatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaa |
557 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811292 |
tgttggtttccagccacaatagtaacaataatgcatcaatgggaaatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaa |
33811391 |
T |
|
| Q |
558 |
attctaccatgtcagtaacaaattgacaaacttggcaattggtagctattgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatg |
657 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811392 |
attctaccatgtcagtaacaaattgacaaacttggcaattggtaactattgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatg |
33811491 |
T |
|
| Q |
658 |
cacacggttcaaaaccctctataaatagagaagagtttcagcaatgaaacacaccacaacacaatcctcactcacatagagttgagagaaaaatagagag |
757 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811492 |
cacacggttcaaaaccctctataaatagagaagagtttcagcaatgaaacacaccacaacacaatcctcactcacatagagttgagagaaaaatagagag |
33811591 |
T |
|
| Q |
758 |
ttcctcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatt |
857 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33811592 |
ttcctcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatt |
33811691 |
T |
|
| Q |
858 |
tgtattcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttcccttactcaca-tgagaaggttttc |
940 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
33811692 |
tgtattcccattattattatagtggagatttaagaggcctacgggtcccgtggttttt-ccttactcacattgagaaggttttc |
33811774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 458 - 940
Target Start/End: Original strand, 33816210 - 33816692
Alignment:
| Q |
458 |
tgttggtttccagccacaatagtaacaataatgcatcaatgggaaatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaa |
557 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816210 |
tgttggtttccagccacaatagtaacaataatgcatcaatgggaaatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaa |
33816309 |
T |
|
| Q |
558 |
attctaccatgtcagtaacaaattgacaaacttggcaattggtagctattgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatg |
657 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816310 |
attctaccatgtcagtaacaaattgacaaacttggcaattggtaactattgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatg |
33816409 |
T |
|
| Q |
658 |
cacacggttcaaaaccctctataaatagagaagagtttcagcaatgaaacacaccacaacacaatcctcactcacatagagttgagagaaaaatagagag |
757 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816410 |
cacacggttcaaaaccctctataaatagagaagagtttcagcaatgaaacacaccacaacacaatcctcactcacatagagttgagagaaaaatagagag |
33816509 |
T |
|
| Q |
758 |
ttcctcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatt |
857 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816510 |
ttcctcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatt |
33816609 |
T |
|
| Q |
858 |
tgtattcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttcccttactcaca-tgagaaggttttc |
940 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
33816610 |
tgtattcccattattattatagtggagatttaagaggcctacgggtcccgtggttttt-ccttactcacattgagaaggttttc |
33816692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 458 - 940
Target Start/End: Original strand, 33807638 - 33808120
Alignment:
| Q |
458 |
tgttggtttccagccacaatagtaacaataatgcatcaatgggaaatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaa |
557 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33807638 |
tgttggtttccagccacaatagtaacaataatgcatcaatgggaaatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaa |
33807737 |
T |
|
| Q |
558 |
attctaccatgtcagtaacaaattgacaaacttggcaattggtagctattgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatg |
657 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33807738 |
attctaccatgtcagtaacaaattgacaaacttggcaatgggtaactattgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatg |
33807837 |
T |
|
| Q |
658 |
cacacggttcaaaaccctctataaatagagaagagtttcagcaatgaaacacaccacaacacaatcctcactcacatagagttgagagaaaaatagagag |
757 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33807838 |
cacacggttcaaaaccctctataaatagagaagagtttcagcaatgaaacacaccacaacacaatcctcactcacatagagttgagagaaaaatagagag |
33807937 |
T |
|
| Q |
758 |
ttcctcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatt |
857 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33807938 |
ttcctcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatt |
33808037 |
T |
|
| Q |
858 |
tgtattcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttcccttactcaca-tgagaaggttttc |
940 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
33808038 |
tgtattcccattattattatagtggagatttaagaggcctacgggtcccgtggttttt-ccttactcacattgagaaggttttc |
33808120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 154 - 457
Target Start/End: Complemental strand, 13868472 - 13868169
Alignment:
| Q |
154 |
ccaggtttgataggtttagttatgctttaaggaattctgtcacaagcagtagtatgcataaatcaacataagtggaaatcagatttttcatttccaatat |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13868472 |
ccaggtttgataggtttagttatgctttaaggaattctgtcacaagcagtagtatgcataaatcaacataagtggaaatcagatttttcatttccaatat |
13868373 |
T |
|
| Q |
254 |
tgtcacatggaatgttttcaaaattaagtaacacgaggattaatgtcaaatcaacatgtaataggagaaataagccatccataaatgactctttaacata |
353 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
13868372 |
tgtcacattgaatgttttcaaaattaagtaacacgaggattaatgtcaaatcaacatgtaataggagaaataagccatgcataaatgactctttaacata |
13868273 |
T |
|
| Q |
354 |
cattttagtaaaataaccctaattacattcaatcaaccccaacgccaaaccttaaattcccttccaatgcgaaaagcacaatgagttttaacggaagcat |
453 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13868272 |
cattttagtaaaataaccctaattacattcaatcaaccccaacgccaaaccttaaattcccttccaatgcgaaaagcacaatgagttttaacggaagcat |
13868173 |
T |
|
| Q |
454 |
aaac |
457 |
Q |
| |
|
|||| |
|
|
| T |
13868172 |
aaac |
13868169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 12 - 103
Target Start/End: Complemental strand, 13872147 - 13872055
Alignment:
| Q |
12 |
attgataacatcatttcatttttaactgttttatggat-tatcaagttatcccctcacttgttaagttccttgtaattctctttctctggcat |
103 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||| |||||||| |||||||| ||||| |
|
|
| T |
13872147 |
attgatagcataatttcatttttaactgttttatggaactatcaagtgatcacctcacttgttaagttctttgtaattgtctttctccggcat |
13872055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 13882613 - 13882533
Alignment:
| Q |
18 |
aacatcatttcatttttaactgttttatgg-attatcaagttatcccctcacttgttaagttccttgtaattctctttctc |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||| || |||| |||||||||||||||| |||||||| |||||||| |
|
|
| T |
13882613 |
aacatcatttcatttttaactgttttatgggactatactgtgatcctctcacttgttaagttctttgtaattgtctttctc |
13882533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 13874480 - 13874401
Alignment:
| Q |
9 |
agcattgataacatcatttcatttttaactgttttatgg-attatcaagttatcccctcacttgttaagttccttgtaat |
87 |
Q |
| |
|
||||||||||||||||||| ||||| || |||||| || | |||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
13874480 |
agcattgataacatcatttaattttcaatggttttacgggactatcaagtgatcccctcacttgttaagttctttgtaat |
13874401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 14392577 - 14392653
Alignment:
| Q |
8 |
aagcattgataacatcatttcatttttaactgttttatgg-attatcaagttatcccctcacttgttaagttccttgt |
84 |
Q |
| |
|
||||||||| ||||||| |||||||| | | ||||||||| | |||||||| |||||||||||||| |||||| |||| |
|
|
| T |
14392577 |
aagcattgacaacatcagttcatttt-agcagttttatgggactatcaagtgatcccctcacttgtaaagttcattgt |
14392653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 857 - 940
Target Start/End: Original strand, 16698504 - 16698589
Alignment:
| Q |
857 |
ttgtattcccattattattatagtgg-agatttaagaggcctacgggtcccgtggtttttcccttactcaca-tgagaaggttttc |
940 |
Q |
| |
|
||||||||||||||| |||||||||| || ||||||||| | | ||||||| | |||||||||| |||||| |||||||| |||| |
|
|
| T |
16698504 |
ttgtattcccattatcattatagtggaagttttaagaggtccaagggtcccataatttttccctttctcacattgagaaggatttc |
16698589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 179; Significance: 4e-96; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 641 - 940
Target Start/End: Original strand, 50603003 - 50603308
Alignment:
| Q |
641 |
gaaccaagcatttaatgcacacggttcaaaaccctctataaatagagaagagtttcagcaatg-aaacacaccacaaca-----caatcctcactcacat |
734 |
Q |
| |
|
|||||||||||||||||| |||||||| | ||||||||||||||||||| |||||||| | ||||||||||||||| ||||||||||||||| |
|
|
| T |
50603003 |
gaaccaagcatttaatgcttacggttcatttctctctataaatagagaagagcttcagcaaagcaaacacaccacaacatagcacaatcctcactcacac |
50603102 |
T |
|
| Q |
735 |
agagttgagagaaaaatagagagttcctcataagagtgtgagagaaaaatatagtgagccaatttgt--gagagttgtatctacaaattgagatacatag |
832 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
50603103 |
agagttgagagaaaaatagaaagttcctcataagagtg--agagaaaaatatagtgagccaatttgtatgagagttgtatctacaaattgagatatatag |
50603200 |
T |
|
| Q |
833 |
ttaggtccacctgagggtgaagatttgtattcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttcccttactcaca-tgag |
931 |
Q |
| |
|
||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||| |
|
|
| T |
50603201 |
ttaggtccatctaaaggtgaagatttgtattcccattattattatagtggagatttaagaggcctacgggttccgtggttttt-tcttactcacattgag |
50603299 |
T |
|
| Q |
932 |
aaggttttc |
940 |
Q |
| |
|
||||||||| |
|
|
| T |
50603300 |
aaggttttc |
50603308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 779 - 883
Target Start/End: Complemental strand, 31725448 - 31725346
Alignment:
| Q |
779 |
aaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattata |
878 |
Q |
| |
|
||||||||||| | |||||||||||| |||| |||||||||||||||||| || |||||||||| || |||||||||||||||| ||||||| ||||| |
|
|
| T |
31725448 |
aaaaatatagttaatcaatttgtgagaattgt--ctacaaattgagatacatcgtaaggtccacctaagtgtgaagatttgtattctcattattgttata |
31725351 |
T |
|
| Q |
879 |
gtgga |
883 |
Q |
| |
|
|||| |
|
|
| T |
31725350 |
ttgga |
31725346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 785 - 940
Target Start/End: Complemental strand, 54967477 - 54967313
Alignment:
| Q |
785 |
atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata |
878 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| | ||| || || ||||||| ||||||||| | ||||||||||||||| |||||| |
|
|
| T |
54967477 |
atagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattata |
54967378 |
T |
|
| Q |
879 |
gtggagattt--aagaggcctacgggtcccgtggtttttcccttactcaca-tgagaaggttttc |
940 |
Q |
| |
|
||||| ||| |||||||| | ||||||||||||||||||||| |||| | ||||||||||||| |
|
|
| T |
54967377 |
gtggaagtttttaagaggcccaagggtcccgtggtttttccctttctcatattgagaaggttttc |
54967313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 838 - 940
Target Start/End: Complemental strand, 54980051 - 54979945
Alignment:
| Q |
838 |
tccacctgagggtgaagat-ttgtattcccattattattatagtggagattt--aagaggcctacgggtcccgtggtttttcccttactcaca-tgagaa |
933 |
Q |
| |
|
||||||| ||||||||| | ||||||||||||||| ||||||||||| ||| |||||||| | ||||||||||||||||||||| |||| | |||||| |
|
|
| T |
54980051 |
tccacctaagggtgaagttgttgtattcccattatcattatagtggaagtttttaagaggcccaagggtcccgtggtttttccctttctcatattgagaa |
54979952 |
T |
|
| Q |
934 |
ggttttc |
940 |
Q |
| |
|
||||||| |
|
|
| T |
54979951 |
ggttttc |
54979945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 785 - 917
Target Start/End: Original strand, 39298736 - 39298873
Alignment:
| Q |
785 |
atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata |
878 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||| | ||| ||||| ||||||| ||||||||| | |||||||||| |||| |||||| |
|
|
| T |
39298736 |
atagtgagccaatttgtgagagt-gtccttacaaattgagagatatattgtagttagatccacctaagggtgaagttgttgtattccctttatcattata |
39298834 |
T |
|
| Q |
879 |
gtggagatttaagaggcctacgggtcccgtggtttttcc |
917 |
Q |
| |
|
||||| |||||||||| | |||||||||| ||||||| |
|
|
| T |
39298835 |
gtggaagtttaagaggcacaagggtcccgtgatttttcc |
39298873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 838 - 940
Target Start/End: Complemental strand, 44782733 - 44782627
Alignment:
| Q |
838 |
tccacctgagggtgaagat-ttgtattcccattattattatagtgg-agatttaagaggcctacgggtcccgtgg-tttttcccttactcaca-tgagaa |
933 |
Q |
| |
|
||||||| ||||||||| | ||||||||||||||| |||||||||| || ||||||||| | | ||||||||||| |||||||||| |||| | |||||| |
|
|
| T |
44782733 |
tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggtccaagggtcccgtggttttttccctttctcatattgagaa |
44782634 |
T |
|
| Q |
934 |
ggttttc |
940 |
Q |
| |
|
||||||| |
|
|
| T |
44782633 |
ggttttc |
44782627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 169; Significance: 4e-90; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 4e-90
Query Start/End: Original strand, 663 - 940
Target Start/End: Complemental strand, 31152298 - 31152021
Alignment:
| Q |
663 |
ggttcaaaaccctctataaatagagaagagtttcagcaatgaaa-cacaccacaacacaatcctcactcacatagagttgagagaaaaatagagagttcc |
761 |
Q |
| |
|
|||||||| | ||||||||||||||||||| |||||||| | || ||||||||||||||| | || || |||||||||||||||||||||||||| |
|
|
| T |
31152298 |
ggttcaaatctctctataaatagagaagagcttcagcaaagcaatcacaccacaacacaa--cacaatcctcgggagttgagagaaaaatagagagttcc |
31152201 |
T |
|
| Q |
762 |
tcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgta |
861 |
Q |
| |
|
|| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
31152200 |
tcgtaagagtgtgagagaaaaatatagtaagccaatttgtgagagttgtatctataaatttagatacgtagttaggtccatctgagggtgaagatttgta |
31152101 |
T |
|
| Q |
862 |
ttcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttcccttactcaca-tgagaaggttttc |
940 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
31152100 |
ttcccattattattatagtggagatttaagaggcctacggatcccgtggtttttttcttactcacattgagaaggttttc |
31152021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 838 - 940
Target Start/End: Original strand, 22981504 - 22981609
Alignment:
| Q |
838 |
tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcctacgggtcccgtggtttttcccttactcaca-tgagaag |
934 |
Q |
| |
|
||||||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||||||| | ||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
22981504 |
tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggtttttccctttctcacattgagaag |
22981603 |
T |
|
| Q |
935 |
gttttc |
940 |
Q |
| |
|
|||||| |
|
|
| T |
22981604 |
gttttc |
22981609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 838 - 940
Target Start/End: Complemental strand, 23806904 - 23806799
Alignment:
| Q |
838 |
tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcctacgggtcccgtggtttttcccttactcaca-tgagaag |
934 |
Q |
| |
|
||||||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||||||| | ||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
23806904 |
tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggtttttccctttctcacattgagaag |
23806805 |
T |
|
| Q |
935 |
gttttc |
940 |
Q |
| |
|
|||||| |
|
|
| T |
23806804 |
gttttc |
23806799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 776 - 877
Target Start/End: Complemental strand, 1111564 - 1111461
Alignment:
| Q |
776 |
gagaaaaatatagtgagccaatttgtgagagttgtatcta--caaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattatta |
873 |
Q |
| |
|
|||||||||||| || ||||||||||||| | |||||| ||||||||||||||||||||||| || | |||||||| ||||||||| |||||||| |
|
|
| T |
1111564 |
gagaaaaatataaggaaccaatttgtgagaaatatatctatacaaattgagatacatagttaggtttacgtaagggtgaaagtttgtattctcattatta |
1111465 |
T |
|
| Q |
874 |
ttat |
877 |
Q |
| |
|
|||| |
|
|
| T |
1111464 |
ttat |
1111461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 3e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 820 - 940
Target Start/End: Complemental strand, 29707069 - 29706949
Alignment:
| Q |
820 |
ttgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttccct |
919 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| | | |||||||||||||||||||||||||||||| ||| | |||||||| || || ||| |
|
|
| T |
29707069 |
ttgagatacatagttaggtccacccgagggtgaagattttttattccattattattatagtggagatttaagaggtctatgagtcccgtgattgtt-cct |
29706971 |
T |
|
| Q |
920 |
tactcaca-tgagaaggttttc |
940 |
Q |
| |
|
|||||| | ||||||||||||| |
|
|
| T |
29706970 |
tactcatattgagaaggttttc |
29706949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 4e-19; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 838 - 940
Target Start/End: Complemental strand, 13465165 - 13465060
Alignment:
| Q |
838 |
tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcctacgggtcccgtggtttttcccttactcaca-tgagaag |
934 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||| ||||||||||| | ||||||||||| | |||||| |||||||||||||| |||||| ||||||| |
|
|
| T |
13465165 |
tccacctgagggtgaacttgttgtattcccattatcattatagtggatgttttaagaggcccaagggtcctgtggtttttccctttctcacattgagaag |
13465066 |
T |
|
| Q |
935 |
gttttc |
940 |
Q |
| |
|
|||||| |
|
|
| T |
13465065 |
gttttc |
13465060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 785 - 940
Target Start/End: Complemental strand, 25857395 - 25857232
Alignment:
| Q |
785 |
atagtgagccaatttgtgagagttgtatctacaaatt--gagatacat---agttaggtccacctgagggtgaagat-ttgtattcccattattattata |
878 |
Q |
| |
|
||||||||||||||||||||||| | |||||||| |||||| || ||| || ||||||| | ||||||| | ||||||||||||||| |||||| |
|
|
| T |
25857395 |
atagtgagccaatttgtgagagtgttccttacaaattaagagatatattgtagtgagatccacctaaaggtgaagttgttgtattcccattatcattata |
25857296 |
T |
|
| Q |
879 |
gtgga-gatttaagaggcctacgggtcccgtggtttttcccttactcaca-tgagaaggttttc |
940 |
Q |
| |
|
||||| | ||||||||||| | |||||||||||||||||| || |||||| ||||||||||||| |
|
|
| T |
25857295 |
gtggaagttttaagaggcccaagggtcccgtggtttttccttttctcacattgagaaggttttc |
25857232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 785 - 940
Target Start/End: Complemental strand, 4835840 - 4835676
Alignment:
| Q |
785 |
atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata |
878 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| | ||| || || ||||||| ||||||||| | ||| ||||||||||| |||||| |
|
|
| T |
4835840 |
atagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgcattcccattatcattata |
4835741 |
T |
|
| Q |
879 |
gtgga-gatttaagaggcctacgggtcccgtggt-ttttcccttactcaca-tgagaaggttttc |
940 |
Q |
| |
|
||||| | ||||||||||| | |||||||||||| ||||||||| |||||| ||||||||||||| |
|
|
| T |
4835740 |
gtggaagttttaagaggcccaagggtcccgtggttttttccctttctcacattgagaaggttttc |
4835676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 775 - 831
Target Start/End: Complemental strand, 8252853 - 8252797
Alignment:
| Q |
775 |
agagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacata |
831 |
Q |
| |
|
|||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
8252853 |
agagaaaaatatagtgagtcaatttatgatagttgtatctacaaattgagatacata |
8252797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 838 - 940
Target Start/End: Complemental strand, 24379487 - 24379382
Alignment:
| Q |
838 |
tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcctacgggtcccgtggtttttcccttactcaca-tgagaag |
934 |
Q |
| |
|
||||||| ||||||||| | ||||||||| ||||| ||||||||||| | ||||||||||| | | |||||||||||||||||| |||||| ||||||| |
|
|
| T |
24379487 |
tccacctaagggtgaagttgttgtattcctattatcattatagtggaagttttaagaggcccaaagatcccgtggtttttccctttctcacattgagaag |
24379388 |
T |
|
| Q |
935 |
gttttc |
940 |
Q |
| |
|
|||||| |
|
|
| T |
24379387 |
gttttc |
24379382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 838 - 940
Target Start/End: Complemental strand, 4842857 - 4842751
Alignment:
| Q |
838 |
tccacctgagggtgaagat-ttgtattcccattattattatagtgg-agatttaagaggcctacgggtcccgtgg-tttttcccttactcaca-tgagaa |
933 |
Q |
| |
|
||||||| ||||||||| | ||||||||| ||||| |||||||||| || ||||||||||| | |||||| |||| |||||||||| |||||| |||||| |
|
|
| T |
4842857 |
tccacctaagggtgaagttgttgtattcctattatcattatagtggaagttttaagaggcccaagggtcctgtggttttttccctttctcacattgagaa |
4842758 |
T |
|
| Q |
934 |
ggttttc |
940 |
Q |
| |
|
||||||| |
|
|
| T |
4842757 |
ggttttc |
4842751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 6e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 785 - 940
Target Start/End: Complemental strand, 9757480 - 9757315
Alignment:
| Q |
785 |
atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata |
878 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| | ||| || || ||||||| ||||||||| | ||||||||||||||| |||||| |
|
|
| T |
9757480 |
atagtgagccaatttgtgagagtgttccttacaaattgagagatatattatagtgagatccacctaagggtgaagttgttgtattcccattatcattata |
9757381 |
T |
|
| Q |
879 |
gtgga---gatttaagaggcctacgggtcccgtggtttttcccttactcaca-tgagaaggttttc |
940 |
Q |
| |
|
||||| ||||||||||| | ||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
9757380 |
gtggaagttttttaagaggcccaagggtcccgtggtttttccctttctcacattgagaaggttttc |
9757315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 840 - 940
Target Start/End: Complemental strand, 42683038 - 42682936
Alignment:
| Q |
840 |
cacctgagggtgaagat-ttgtattcccattattattatagtgg-agatttaagaggcctacgggtcccgtggtttttcccttactcaca-tgagaaggt |
936 |
Q |
| |
|
||||| ||||||||| | ||||||||||||||| |||||||||| || ||||||||| | | |||||||||| ||||| |||| |||||| ||||||||| |
|
|
| T |
42683038 |
cacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggtccaagggtcccgtgattttt-cctttctcacattgagaaggt |
42682940 |
T |
|
| Q |
937 |
tttc |
940 |
Q |
| |
|
|||| |
|
|
| T |
42682939 |
tttc |
42682936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 838 - 940
Target Start/End: Original strand, 2727 - 2833
Alignment:
| Q |
838 |
tccacctgagggtgaagat-ttgtattcccattattattatagtgg-agatttaagaggcctacgggtcccgtgg-tttttcccttactcaca-tgagaa |
933 |
Q |
| |
|
||||||| ||||||||| | ||||||||||||||| |||||||||| || ||||||||||| | ||||||||||| |||||||||| |||||| |||||| |
|
|
| T |
2727 |
tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggttttttccctttctcacattgagaa |
2826 |
T |
|
| Q |
934 |
ggttttc |
940 |
Q |
| |
|
||||||| |
|
|
| T |
2827 |
ggttttc |
2833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 4e-16; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 785 - 940
Target Start/End: Original strand, 41481548 - 41481712
Alignment:
| Q |
785 |
atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata |
878 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| | ||| || || ||||||| ||||||||| | ||||||||||||||| |||||| |
|
|
| T |
41481548 |
atagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattata |
41481647 |
T |
|
| Q |
879 |
gtgg-agatttaagaggcctacgggtcccgtgg-tttttcccttactcaca-tgagaaggttttc |
940 |
Q |
| |
|
|||| || ||||||||||| | ||||||||||| |||||||||| |||| | ||||||||||||| |
|
|
| T |
41481648 |
gtggaagttttaagaggcccaagggtcccgtggttttttccctttctcatattgagaaggttttc |
41481712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 785 - 940
Target Start/End: Original strand, 36167547 - 36167710
Alignment:
| Q |
785 |
atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata |
878 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| | ||| || || ||||||| ||||||||| | ||||||||||||||| |||||| |
|
|
| T |
36167547 |
atagtgagccaatttgtgagagtgttccttacaaattgagagatatattatagtgagatccacctaagggtgaagttgttgtattcccattatcattata |
36167646 |
T |
|
| Q |
879 |
gtgg-agatttaagaggcctacgggtcccgtgg-tttttcccttactcaca-tgagaaggttttc |
940 |
Q |
| |
|
|||| || ||||||||||| | |||| |||||| |||||||||| |||| | ||||||||||||| |
|
|
| T |
36167647 |
gtggaagttttaagaggcccaagggt-ccgtggttttttccctttctcatattgagaaggttttc |
36167710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 841 - 940
Target Start/End: Complemental strand, 18951326 - 18951223
Alignment:
| Q |
841 |
acctgagggtgaagat-ttgtattcccattattattatagtgg-agatttaagaggcctacgggtcccgtgg-tttttcccttactcaca-tgagaaggt |
936 |
Q |
| |
|
|||| ||||||||| | ||||||||||||||| |||||||||| || ||||||| ||| | |||| ||||| |||||||||| |||||| ||||||||| |
|
|
| T |
18951326 |
acctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaagcccaaaggtctcgtggttttttccctttctcacattgagaaggt |
18951227 |
T |
|
| Q |
937 |
tttc |
940 |
Q |
| |
|
|||| |
|
|
| T |
18951226 |
tttc |
18951223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 857 - 913
Target Start/End: Complemental strand, 342404 - 342347
Alignment:
| Q |
857 |
ttgtattcccattattattatagtgg-agatttaagaggcctacgggtcccgtggttt |
913 |
Q |
| |
|
||||||||||||||| |||||||||| || ||||||||||| | || ||||||||||| |
|
|
| T |
342404 |
ttgtattcccattatcattatagtggaagttttaagaggcccaaggatcccgtggttt |
342347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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