View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1642R-Insertion-7 (Length: 871)
Name: NF1642R-Insertion-7
Description: NF1642R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1642R-Insertion-7 |
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Alignment Details
Target: chr8 (Bit Score: 793; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 793; E-Value: 0
Query Start/End: Original strand, 9 - 870
Target Start/End: Original strand, 5040539 - 5041400
Alignment:
| Q |
9 |
gatcatttgcatgggaaaagaagggttaaaagagaaagcaatactagttggattacaatccatagcattaactttgttacctaaattttcaagtgcctta |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5040539 |
gatcatttgcatgggaaaagaagggttaaaagagaaagcaatactagttggattacaatccatagcattaactttgttacctaaattttcaagtgcctta |
5040638 |
T |
|
| Q |
109 |
acctgtgaccttaaaaacttgcgataatttgcagcttcatcaagcattgaagcagtgtccattttgcttccaccaggtacaatcttttgcaaaaccctaa |
208 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5040639 |
acctgtgaccttaaaaacttgagataatttgcagcttcatcaagcattgaagcagtgtccattttgcttccaccaggtacaatcttttgcaaaaccctaa |
5040738 |
T |
|
| Q |
209 |
ttctttcacctattctttcccttctatgtcttgcagcaacagtttgtggatcatttgatatctttacattcttcctcttaggcnnnnnnncaattacatc |
308 |
Q |
| |
|
||||||||| ||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
5040739 |
ttctttcacttattctttctcttctatgccttgcagcaacagtttgaggatcatttgatatctttacattcttcctcttcggctttttttcaattacatc |
5040838 |
T |
|
| Q |
309 |
aatatcatccattccaaaattcactggtctaaatgctgctgctctatacatcatttccttcatttgtgctattgcttctggatcagcttcttcaattgaa |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5040839 |
aatatcatccattccaaaattcactggtctaaatgctgctgctctatacatcatttccttcatttgtgctattgcttctggatcagcttcttcaattgaa |
5040938 |
T |
|
| Q |
409 |
gaagaacagcacattgatgatgaatttggttgttgaaaattaatattagttgaacaaggtcccttatcacatcttggtttcttgcattttggtggtttat |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5040939 |
gaagaacagcacattgatgatgaatttggttgttgaaaattaatattagttgaacaaggtcccttatcacatcttggtttcttgcattttggtggtttat |
5041038 |
T |
|
| Q |
509 |
cagtgataagtctaaaaccaccttcaacaggtgaagaattatgaatagtacttgattgtattgcttttcttggatggatgtattgatctgaggaactttg |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5041039 |
cagtgataagtctaaaaccaccttcaacaggtgaagaattatgaatagtacttgattgtattgcttttcttggatggatgtattgatctgaggaactttg |
5041138 |
T |
|
| Q |
609 |
agagattgtttcatcaaattcattgagtggacactgaatgtttttgtttccagtaccctctgtagcactgacacttctgatcgaaggcgtgtctggtgtt |
708 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
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|
| T |
5041139 |
agagattgtttcatcaaattcattgagtggacactgaatgtttttgtttccagtaccctctgtagcactgacacttttgatcgaagacgtgtctggtgtt |
5041238 |
T |
|
| Q |
709 |
tgcgtccgtgtttgtgtcagtgcttcgtagcttgtactgtttgaaacattactatcagtttcacctgaggaagttgctgtgttactgacataactgaagt |
808 |
Q |
| |
|
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
5041239 |
cgcatctgtgtttgtgtcagtgcttcgtagcttgtactgtttgaaacattactatcagtttcacctgaggaggttgctgtgttactgacataactgaagt |
5041338 |
T |
|
| Q |
809 |
tccataagtttttgcagtcagaaaatagctttgaaattccatcattatcattttcgacagaa |
870 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5041339 |
tccataagtttttgcagtcagaaaatagctttgaaattccatcattatcattttcgacagaa |
5041400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 666 - 707
Target Start/End: Complemental strand, 14229647 - 14229606
Alignment:
| Q |
666 |
ctctgtagcactgacacttctgatcgaaggcgtgtctggtgt |
707 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||| ||||| |
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|
| T |
14229647 |
ctctatagcactgacacttctgatcgaaggcatgtccggtgt |
14229606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 90; Significance: 5e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 123 - 403
Target Start/End: Original strand, 43186976 - 43187247
Alignment:
| Q |
123 |
aaacttgcgataatttgcagcttcatcaagcattgaagcagtgtccattttgcttccaccaggtacaatcttttgcaaaaccctaattctttcacctatt |
222 |
Q |
| |
|
||||||| | ||||| |||||||||||||||||||| ||||||||||| ||| |||||||||| |||||||| ||||| || ||||| ||||||| |||| |
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|
| T |
43186976 |
aaacttgaggtaattagcagcttcatcaagcattgatgcagtgtccatcttggttccaccaggaacaatcttctgcaagactctaatcctttcacttatt |
43187075 |
T |
|
| Q |
223 |
ctttcccttctatgtcttgcagcaacagtttgtggatcatttgatatctttacattcttcctcttaggcnnnnnnncaattacatcaatatcatccattc |
322 |
Q |
| |
|
||||||||||| || || || || |||||||||||||| ||||||||||| ||||||||||| |||||| || ||||| | |||| | |
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|
| T |
43187076 |
ctttcccttctttgcctagccgccacagtttgtggatcctttgatatcttaacattcttccttttaggctt--------ttccatca----cttccaaac |
43187163 |
T |
|
| Q |
323 |
caaaat---tcactggtctaaatgctgctgctctatacatcatttccttcatttgtgctattgcttctggatcagcttcttcaa |
403 |
Q |
| |
|
| |||| |||| || ||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||| ||||||| |
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|
| T |
43187164 |
ccaaattcgtcaccggcctaaatgctgcagctctatatatcatttccttcatttgtgctattgcctctggatcaggctcttcaa |
43187247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 4e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 142 - 287
Target Start/End: Complemental strand, 6259698 - 6259553
Alignment:
| Q |
142 |
gcttcatcaagcattgaagcagtgtccattttgcttccaccaggtac-aatcttttgcaaaaccctaattctttcacctattctttcccttctatgtctt |
240 |
Q |
| |
|
|||||||| | ||| ||||||||||||||||| ||||||||||||| ||||||| | || | ||| |||||||||| |||||||| |||||||||||| |
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|
| T |
6259698 |
gcttcatctaacatagaagcagtgtccatttttgttccaccaggtactaatcttt-gtaatatccttattctttcactaattctttctcttctatgtctt |
6259600 |
T |
|
| Q |
241 |
gcagcaacagtttgtggatcatttgatatctttacattcttcctctt |
287 |
Q |
| |
|
|| || ||| |||||||||| ||||| ||||| |||||||| ||||| |
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|
| T |
6259599 |
gctgctacactttgtggatcctttgaaatcttcacattctttctctt |
6259553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 666 - 707
Target Start/End: Complemental strand, 28136322 - 28136281
Alignment:
| Q |
666 |
ctctgtagcactgacacttctgatcgaaggcgtgtctggtgt |
707 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
28136322 |
ctctatagcactgacacttctgatcgaagacgtgtctggtgt |
28136281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 665 - 707
Target Start/End: Complemental strand, 13635682 - 13635640
Alignment:
| Q |
665 |
cctctgtagcactgacacttctgatcgaaggcgtgtctggtgt |
707 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
13635682 |
cctcagtagcactgacacttctgatagaaggcgtgtctggtgt |
13635640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 666 - 707
Target Start/End: Original strand, 14782796 - 14782837
Alignment:
| Q |
666 |
ctctgtagcactgacacttctgatcgaaggcgtgtctggtgt |
707 |
Q |
| |
|
||||||||||| |||||||||||| ||| ||||||||||||| |
|
|
| T |
14782796 |
ctctgtagcaccgacacttctgatggaaagcgtgtctggtgt |
14782837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 669 - 707
Target Start/End: Complemental strand, 4785083 - 4785045
Alignment:
| Q |
669 |
tgtagcactgacacttctgatcgaaggcgtgtctggtgt |
707 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
4785083 |
tgtagcaccgacacttctgatcgaagacgtgtctggtgt |
4785045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 665 - 706
Target Start/End: Complemental strand, 18263604 - 18263563
Alignment:
| Q |
665 |
cctctgtagcactgacacttctgatcgaaggcgtgtctggtg |
706 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||| |||| |
|
|
| T |
18263604 |
cctctgtagcaccgacacttctgatcgaagacgtgtcaggtg |
18263563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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