View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1642R-Insertion-8 (Length: 850)

Name: NF1642R-Insertion-8
Description: NF1642R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1642R-Insertion-8
NF1642R-Insertion-8
[»] chr6 (8 HSPs)
chr6 (8-834)||(9580869-9581691)
chr6 (545-789)||(138329-138573)
chr6 (545-789)||(146350-146594)
chr6 (632-829)||(12691903-12692100)
chr6 (450-699)||(14392407-14392656)
chr6 (618-717)||(19248699-19248798)
chr6 (751-805)||(30748689-30748743)
chr6 (746-834)||(2683906-2683994)
[»] chr1 (4 HSPs)
chr1 (339-810)||(10490977-10491448)
chr1 (626-718)||(24662485-24662577)
chr1 (776-829)||(10608270-10608323)
chr1 (632-812)||(5413112-5413292)
[»] chr2 (7 HSPs)
chr2 (530-826)||(37983559-37983855)
chr2 (632-813)||(3156494-3156675)
chr2 (779-834)||(40990928-40990983)
chr2 (341-406)||(5539503-5539568)
chr2 (744-804)||(10206801-10206861)
chr2 (347-418)||(37983967-37984038)
chr2 (641-699)||(37599365-37599423)
[»] chr8 (4 HSPs)
chr8 (641-715)||(38921163-38921237)
chr8 (779-813)||(19298041-19298075)
chr8 (608-690)||(25721086-25721168)
chr8 (776-834)||(40219877-40219935)
[»] chr7 (4 HSPs)
chr7 (779-829)||(26159747-26159797)
chr7 (736-813)||(6214789-6214866)
chr7 (641-699)||(13760880-13760938)
chr7 (746-829)||(19480663-19480746)
[»] scaffold1185 (1 HSPs)
scaffold1185 (778-834)||(2096-2152)
[»] chr5 (6 HSPs)
chr5 (779-829)||(28569803-28569853)
chr5 (746-835)||(35077484-35077573)
chr5 (778-829)||(9595107-9595158)
chr5 (341-402)||(34423972-34424033)
chr5 (736-813)||(34424389-34424466)
chr5 (635-704)||(39366058-39366127)
[»] chr3 (2 HSPs)
chr3 (784-821)||(18377700-18377737)
chr3 (789-826)||(30075775-30075812)
[»] scaffold0094 (1 HSPs)
scaffold0094 (341-408)||(23750-23817)
[»] chr4 (5 HSPs)
chr4 (779-813)||(54824752-54824786)
chr4 (789-826)||(14546507-14546544)
chr4 (639-704)||(19497477-19497542)
chr4 (746-834)||(46219308-46219396)
chr4 (736-813)||(48104390-48104467)


Alignment Details
Target: chr6 (Bit Score: 716; Significance: 0; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 716; E-Value: 0
Query Start/End: Original strand, 8 - 834
Target Start/End: Complemental strand, 9581691 - 9580869
Alignment:
Q  8 acatagatgaggaatgtgaacgtacattcaaacaattagaaacaataaggtgtaagacagactttaaattattaattaaaaaagctaataaggtaataaa 107  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9581691 acatagatgaggaatatgaacgtacattcaaacaattagaaacaataaggtgtaagacagactttaaattattaattaaaaaagctaataaggtaataaa 9581592  T
Q  108 ctgaaaacatgtttggttttaaattaaattacttgacctaattccaaacttcgcaaggtttatctcacgtcattactccatcgacacaatcgttttcaat 207  Q
    |||||||||||||||||||||||||||||||||| ||||   ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  9581591 ctgaaaacatgtttggttttaaattaaattactt-acct---tccaaacttcgcaaggtttatctcacgtcattactccatcgacacaatcattttcaat 9581496  T
Q  208 ggcactttccaaactttgcatggttaatcgacatcacatcgtttttccacttgtttctactactctcagcttctcgtagaggtcatcttaataggcagac 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9581495 ggcactttccaaactttgcatggttaatcgacatcacatcgtttttccacttgtttctactactctcagcttctcgtagaggtcatcttaataggcagac 9581396  T
Q  308 attggnnnnnnngaaaacaaatgattttagttcattccgtcaaaggtgtctctatttgtgtggcgatttctaagaaacagacttcctacaaaagacaatc 407  Q
    |||||       ||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||| |||||||||||||||||||    
T  9581395 attggtttttttgaaaacaaatgattttagttcattccgtcaaaggtgtctctatttatatggcgacttctaagaaacaggcttcctacaaaagacaatc 9581296  T
Q  408 ttctgcggcggtgagttctccaagatactgaaatggattgcatgtcagggtgtggggctacggaaacggcatcacatttgtttttaggatgccacattct 507  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9581295 ttctgcggcggtgagttctccaagatactgaaacggattgcgtgtcagggtgtggggctacggaaacggcatcacatttgtttttaggatgccacattct 9581196  T
Q  508 tggttctctttggcactttgtttggcactggctgggtatttcctcagtttccttaggtgatatttgacatcatttcattcagtttacaagtataccgggt 607  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |    
T  9581195 tggttctctttggtactttgtttggcactggctgggtatttcctcagtttccttaggtgatatttgacatcatttcattcagtttacaagtatgtcggat 9581096  T
Q  608 ttgcctcgagttactcgttcttatttgagaatcatttggtttgctacggtttgggctatttgaaaggaaaggaataatcgtgtatttcaaaacatggtgt 707  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  9581095 ttgcctcgagttattcgttcttatttgagaatcatttggtttgctacggtttgggctatctgaaaggaaaggaataatcgtgtatttcaaaacatggtgt 9580996  T
Q  708 ctgatccttctgtgttaggtgaaaaacataaattgcattctttcttatggttgaaatctaaaaaggataattttagctatagttatcatgattggtggaa 807  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9580995 ctgatccttctgtgttaggtgaaaaagataaattgcattctttcttatggttgaaatctaaaaaggataattttagctatagttatcatgattggtggaa 9580896  T
Q  808 acatcccctcctttatatgggtatcca 834  Q
    ||||||||| |||||||||| ||||||    
T  9580895 acatccccttctttatatggatatcca 9580869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 545 - 789
Target Start/End: Complemental strand, 138573 - 138329
Alignment:
Q  545 atttcctcagtttccttaggtgatatttgacatcat-ttcattcagtttacaagtataccgggtttgcctcgagttactcgttcttatttgagaatcatt 643  Q
    ||||| |||||||| |||||||| ||| |||||||| ||||| |||||||||| ||| || || |||||| ||| | ||| ||| | ||| ||| | |||    
T  138573 atttcttcagtttctttaggtgacattcgacatcatcttcat-cagtttacaaatatgccagggttgcctagagattctcattcatttttaagacttatt 138475  T
Q  644 tggtttgctacggtttgggctatttgaaaggaaaggaataatcgtgtatttcaaaacatggtgtctgatccttctgtgttaggtgaaaaacataaattgc 743  Q
    ||||||| ||| ||||||  |||||| |||||||||||||  |  | ||| ||||| | || ||||  ||||||||| |||| ||||||   ||||||||    
T  138474 tggtttgttactgtttggattatttggaaggaaaggaatatccaagcattccaaaatacggcgtcttctccttctgttttagctgaaaagtttaaattgc 138375  T
Q  744 attctttcttatggttgaaatctaaaaaggataattttagctatag 789  Q
    |||||||||||||| ||||||| |||| |   ||||||||||||||    
T  138374 attctttcttatggctgaaatcgaaaacgccaaattttagctatag 138329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 545 - 789
Target Start/End: Complemental strand, 146594 - 146350
Alignment:
Q  545 atttcctcagtttccttaggtgatatttgacatcat-ttcattcagtttacaagtataccgggtttgcctcgagttactcgttcttatttgagaatcatt 643  Q
    ||||| |||||||| |||||||| ||| |||||||| ||||| |||||||||| ||| || || |||||| ||| | ||| ||| | ||| ||| | |||    
T  146594 atttcttcagtttctttaggtgacattcgacatcatcttcat-cagtttacaaatatgccagggttgcctagagattctcattcatttttaagacttatt 146496  T
Q  644 tggtttgctacggtttgggctatttgaaaggaaaggaataatcgtgtatttcaaaacatggtgtctgatccttctgtgttaggtgaaaaacataaattgc 743  Q
    ||||||| ||| ||||||  |||||| |||||||||||||  |  | ||| ||||| | || ||||  ||||||||| |||| ||||||   ||||||||    
T  146495 tggtttgttactgtttggattatttggaaggaaaggaatatccaagcattccaaaatacggcgtcttctccttctgttttagctgaaaagtttaaattgc 146396  T
Q  744 attctttcttatggttgaaatctaaaaaggataattttagctatag 789  Q
    |||||||||||||| ||||||| |||| |   ||||||||||||||    
T  146395 attctttcttatggctgaaatcgaaaacgccaaattttagctatag 146350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 632 - 829
Target Start/End: Complemental strand, 12692100 - 12691903
Alignment:
Q  632 ttgagaatcatttggtttgctacggtttgggctatttgaaaggaaaggaataatcgtgtatttcaaaacatggtgtctgatccttctgtgttaggtgaaa 731  Q
    |||||||| ||||| |||| | |  ||||||||||||| |  ||||| || || ||||||||| |||| | ||| |||||| ||||| |  |||  ||||    
T  12692100 ttgagaataatttgatttgtttctttttgggctatttggagagaaagaaacaaccgtgtattttaaaatacggtttctgattcttctattatagcggaaa 12692001  T
Q  732 aacataaattgcattctttcttatggttgaaatctaaaaaggataattttagctatagttatcatgattggtggaaacatcccctcctttatatgggt 829  Q
    ||   |||||| |||||||||| ||| ||||||||||| ||   | |||||||||||||||||||||  ||||||||||||| ||||||| |||||||    
T  12692000 aaataaaattgaattctttcttgtggctgaaatctaaacagacaacttttagctatagttatcatgaccggtggaaacatccactcctttgtatgggt 12691903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 450 - 699
Target Start/End: Complemental strand, 14392656 - 14392407
Alignment:
Q  450 tgtcagggtgtggggctacggaaacggcatcacatttgtttttaggatgccacattcttggttctctttggcactttgtttggcactggctgggtatttc 549  Q
    |||||||||| ||||   |||||||| || |||||||||||||||||||| ||||  | ||||||||||||     ||| || |||||  ||||||||||    
T  14392656 tgtcagggtgcggggactcggaaacgccaacacatttgtttttaggatgcgacatattcggttctctttggtctcatgtgtgacactgattgggtatttc 14392557  T
Q  550 ctcagtttccttaggtgatatttgacatcatttcattcagtttacaagtataccgggtttgcctcgagttactcgttcttatttgagaatcatttggttt 649  Q
     || ||||  | |||||| ||| ||||||||||| |||||||||| | |||  ||||||||||| || | |||| ||| |   ||||||| |||||||||    
T  14392556 ttcggttttatcaggtgacattcgacatcatttccttcagtttactaatatggcgggtttgcctagattcactcattccttcctgagaataatttggttt 14392457  T
Q  650 gctacggtttgggctatttgaaaggaaaggaataatcgtgtatttcaaaa 699  Q
    ||| | ||||| |   |||| ||||||||| |||||| ||| || |||||    
T  14392456 gcttctgtttgagtactttggaaggaaagggataatcatgtcttccaaaa 14392407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 618 - 717
Target Start/End: Complemental strand, 19248798 - 19248699
Alignment:
Q  618 ttactcgttcttatttgagaatcatttggtttgctacggtttgggctatttgaaaggaaaggaataatcgtgtatttcaaaacatggtgtctgatccttc 717  Q
    |||||| ||||| ||||| |||||||||||||||  |  ||||||   ||||||||||||| |||||||| || || |||||   |||||||||||||||    
T  19248798 ttactcattcttttttgaaaatcatttggtttgcctctatttgggtgctttgaaaggaaagtaataatcgagtgttccaaaattcggtgtctgatccttc 19248699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 751 - 805
Target Start/End: Complemental strand, 30748743 - 30748689
Alignment:
Q  751 cttatggttgaaatctaaaaaggataattttagctatagttatcatgattggtgg 805  Q
    ||||||| ||||||| ||| ||| | | |||||||||||||||||||||||||||    
T  30748743 cttatgggtgaaatcaaaacaggttgactttagctatagttatcatgattggtgg 30748689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 746 - 834
Target Start/End: Original strand, 2683906 - 2683994
Alignment:
Q  746 tctttcttatggttgaaatctaaaaagg-ataattttagctatagttatcatgattggtggaaacatcccctcctttatatgggtatcca 834  Q
    |||||||||||||||||||| ||| ||| || |||| || || | |||||||||||||||||| ||| |||| || |||||||| |||||    
T  2683906 tctttcttatggttgaaatcaaaacagggattattt-agttacaattatcatgattggtggaatcattcccttctctatatgggcatcca 2683994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 136; Significance: 2e-70; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 339 - 810
Target Start/End: Original strand, 10490977 - 10491448
Alignment:
Q  339 tcattccgtcaaaggtgtctctatttgtgtggcgatttctaagaaacagacttcctacaaaagacaatcttctgcggcggtgagttctccaagatactga 438  Q
    |||||| |||||||||| |||| ||||||||||  || || ||||||||||||||||| || |||||| |  || || || | ||||||||| |||| ||    
T  10490977 tcattctgtcaaaggtgcctctgtttgtgtggcatttacttagaaacagacttcctactaaggacaatttgatgtggtggcgggttctccaaaatacaga 10491076  T
Q  439 aatggattgcatgtcagggtgtggggctacggaaacggcatcacatttgtttttaggatgccacattcttggttctctttggcactttgtttggcactgg 538  Q
    |  || |||  | ||||  |||||||  || |||||| |||| |||||||||||||||||  | ||| |||| ||||||||| |   ||||||||| |||    
T  10491077 atcggcttgtgtctcagaatgtggggacacagaaacgacatctcatttgtttttaggatgtgatatttttggctctctttggtatcatgtttggcattgg 10491176  T
Q  539 ctgggtatttcctcagtttccttaggtgatatttgacatcatttcattcagtttacaagtataccgggtttgcctcgagttactcgttcttatttgagaa 638  Q
    ||||| ||||| ||||| |||||||  || ||| |||||||| | |  ||||||||||||||  ||||||||||||||||||||| ||| ||||| ||      
T  10491177 ctgggaatttcttcagtctccttagacgacattcgacatcatcttaaccagtttacaagtatgtcgggtttgcctcgagttactcattcatatttaaggc 10491276  T
Q  639 tcatttggtttgctacggtttgggctatttgaaaggaaaggaataatcgtgtatttcaaaacatggtgtctgatccttctgtgttaggtgaaaaacataa 738  Q
    | || ||||||||||| |||||||||||||| |||||||||||||| |||||||| ||||| |  ||||||| ||||||||| |||| || |||   |||    
T  10491277 ttatatggtttgctactgtttgggctatttggaaggaaaggaataaccgtgtattccaaaatacagtgtctgctccttctgttttagctggaaatgttaa 10491376  T
Q  739 attgcattctttcttatggttgaaatctaaaaaggataattttagctatagttatcatgattggtggaaaca 810  Q
    ||||  ||||||||||||| |||||||||| ||||  || ||||||||||  ||||||||||||||||||||    
T  10491377 attgacttctttcttatggctgaaatctaataaggcaaaatttagctatatgtatcatgattggtggaaaca 10491448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 626 - 718
Target Start/End: Original strand, 24662485 - 24662577
Alignment:
Q  626 tcttatttgagaatcatttggtttgctacggtttgggctatttgaaaggaaaggaataatcgtgtatttcaaaacatggtgtctgatccttct 718  Q
    |||| ||||| ||| |||||||||||| |  ||||| ||||||  |||||||| ||||| ||||| |||||||||||||||| |||| |||||    
T  24662485 tcttttttgaaaataatttggtttgcttctatttggactatttagaaggaaagaaataaccgtgtttttcaaaacatggtgtgtgattcttct 24662577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 776 - 829
Target Start/End: Original strand, 10608270 - 10608323
Alignment:
Q  776 aattttagctatagttatcatgattggtggaaacatcccctcctttatatgggt 829  Q
    |||||||| ||||||||| ||||||||||||||||||| ||| ||| |||||||    
T  10608270 aattttagttatagttattatgattggtggaaacatccgctcttttgtatgggt 10608323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 632 - 812
Target Start/End: Complemental strand, 5413292 - 5413112
Alignment:
Q  632 ttgagaatcatttggtttgctacggtttgggctatttgaaaggaaaggaataatcgtgtatttcaaaacatggtgtctgatccttctgtgttaggtgaaa 731  Q
    |||| |||||||||||||||| | |||||||   |||| |||||||||||||| ||||| || |||||   ||| |||||||||||     | | |||||    
T  5413292 ttgaaaatcatttggtttgcttctgtttgggtgttttggaaggaaaggaataaccgtgtcttccaaaattcggtttctgatccttcaactcttgttgaaa 5413193  T
Q  732 aacataaattgcattctttcttatggttgaaatctaaaaaggataattttagctatagttatcatgattggtggaaacatc 812  Q
    |   |||| |||| | ||| |||||||||||||||||| | |  |  || | ||||| |||||||||||||||||||||||    
T  5413192 aggttaaaatgcacttttttttatggttgaaatctaaacatgcgaccttcaactataattatcatgattggtggaaacatc 5413112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 6e-21; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 530 - 826
Target Start/End: Complemental strand, 37983855 - 37983559
Alignment:
Q  530 tggcactggctgggtatttcctcagtttccttaggtgatatttgacatcatttcattcagtttacaagtataccgggtttgcctcgagttactcgttctt 629  Q
    ||||||||| ||||||||||    |||| || |||||| ||| ||||||||||| |||||||||| | |||  ||||||||||| || | |||| ||| |    
T  37983855 tggcactggttgggtatttctaaggttttctcaggtgacattcgacatcatttccttcagtttactaatatggcgggtttgcctagattcactcattcct 37983756  T
Q  630 atttgagaatcatttggtttgctacggtttgggctatttgaaaggaaaggaataatcgtgtatttcaaaacatggtgtctgatccttctgtgttaggtga 729  Q
       | ||||| |||||||||||| | |||| || | |||| ||| |||||||||| ||| | || ||||| | |   ||| || ||||| |  ||  |||    
T  37983755 tcctaagaataatttggtttgcttctgtttaggttctttggaagaaaaggaataaccgtatcttccaaaatacgacttctaattcttctattctaattga 37983656  T
Q  730 aaaacataaattgcattctttcttatggttgaaatctaaaaaggataattttagctatagttatcatgattggtggaaacatcccctcctttatatg 826  Q
    |||   ||||||| | |||||||| ||||||||||| ||| |||  |  ||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  37983655 aaaggttaaattgaactctttcttgtggttgaaatcaaaataggcgacatttagctatagttatcatgattggtggaaacatcctctcctttgtatg 37983559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 632 - 813
Target Start/End: Original strand, 3156494 - 3156675
Alignment:
Q  632 ttgagaatcatttggtttgctacggtttgggctatttgaaaggaaaggaataatcgtgtatttcaaaacatggtgtctgatccttctgtgttaggtgaaa 731  Q
    |||| ||| |||||||||||||| ||||| |||||||| ||||||| ||| || | |||||| ||||| | ||| || ||| ||||| | |||| |||||    
T  3156494 ttgacaattatttggtttgctactgtttgtgctatttggaaggaaatgaacaaccatgtattccaaaatacggtctcagattcttctattttagctgaaa 3156593  T
Q  732 aacataaattgcattctttcttatggttgaaatctaaaaaggataattttagctatagttatcatgattggtggaaacatcc 813  Q
    |   ||| ||| | |||||||| ||| ||||||||||| | |     ||||||||||||| |||| ||||||||||||||||    
T  3156594 aggttaagttgaactctttcttgtggctgaaatctaaacatgccgcctttagctatagttttcataattggtggaaacatcc 3156675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 779 - 834
Target Start/End: Original strand, 40990928 - 40990983
Alignment:
Q  779 tttagctatagttatcatgattggtggaaacatcccctcctttatatgggtatcca 834  Q
    ||||||||||||||| | ||||||||||||||||| ||||||| ||||||| ||||    
T  40990928 tttagctatagttattacgattggtggaaacatccactcctttgtatgggtgtcca 40990983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 341 - 406
Target Start/End: Original strand, 5539503 - 5539568
Alignment:
Q  341 attccgtcaaaggtgtctctatttgtgtggcgatttctaagaaacagacttcctacaaaagacaat 406  Q
    ||||| |||||||||||||| |||||||||||  | ||| | |||||||||||||| |||||||||    
T  5539503 attccttcaaaggtgtctctgtttgtgtggcgcctcctacgcaacagacttcctactaaagacaat 5539568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 744 - 804
Target Start/End: Complemental strand, 10206861 - 10206801
Alignment:
Q  744 attctttcttatggttgaaatctaaaaaggataattttagctatagttatcatgattggtg 804  Q
    ||||||||||||||||||| |  ||| |||  |||||| ||||||||||||||||||||||    
T  10206861 attctttcttatggttgaagttaaaataggtgaattttggctatagttatcatgattggtg 10206801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 347 - 418
Target Start/End: Complemental strand, 37984038 - 37983967
Alignment:
Q  347 tcaaaggtgtctctatttgtgtggcgatttctaagaaacagacttcctacaaaagacaatcttctgcggcgg 418  Q
    ||||||||||||||||||||||||||  | ||  ||||| |||||||||| ||||||||| |  ||||||||    
T  37984038 tcaaaggtgtctctatttgtgtggcgcctacttcgaaactgacttcctactaaagacaatttggtgcggcgg 37983967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 641 - 699
Target Start/End: Original strand, 37599365 - 37599423
Alignment:
Q  641 atttggtttgctacggtttgggctatttgaaaggaaaggaataatcgtgtatttcaaaa 699  Q
    |||||||||||  | ||||||| | ||||||||||||||||| |||||||||| |||||    
T  37599365 atttggtttgcctctgtttgggttctttgaaaggaaaggaatgatcgtgtattccaaaa 37599423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 641 - 715
Target Start/End: Complemental strand, 38921237 - 38921163
Alignment:
Q  641 atttggtttgctacggtttgggctatttgaaaggaaaggaataatcgtgtatttcaaaacatggtgtctgatcct 715  Q
    ||||||||||| || |||||||  ||||| ||||| |||||||||||||||||| |||||||| |||||||||||    
T  38921237 atttggtttgcaactgtttgggtcatttggaaggagaggaataatcgtgtatttaaaaacatgatgtctgatcct 38921163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 779 - 813
Target Start/End: Original strand, 19298041 - 19298075
Alignment:
Q  779 tttagctatagttatcatgattggtggaaacatcc 813  Q
    |||||||| ||||||||||||||||||||||||||    
T  19298041 tttagctacagttatcatgattggtggaaacatcc 19298075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 608 - 690
Target Start/End: Original strand, 25721086 - 25721168
Alignment:
Q  608 ttgcctcgagttactcgttcttatttgagaatcatttggtttgctacggtttgggctatttgaaaggaaaggaataatcgtgt 690  Q
    |||||| |||| |||| ||||  | ||| ||| |||||||||||| | |||||||||||||| |||||||| || ||||||||    
T  25721086 ttgcctagagtcactcattctcttctgaaaataatttggtttgcttctgtttgggctatttggaaggaaagaaacaatcgtgt 25721168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 776 - 834
Target Start/End: Original strand, 40219877 - 40219935
Alignment:
Q  776 aattttagctatagttatcatgattggtggaaacatcccctcctttatatgggtatcca 834  Q
    |||||| ||||||||||||||||||||||| || ||||| | |||| ||||||| ||||    
T  40219877 aattttggctatagttatcatgattggtggcaaaatcccattctttgtatgggtgtcca 40219935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 779 - 829
Target Start/End: Original strand, 26159747 - 26159797
Alignment:
Q  779 tttagctatagttatcatgattggtggaaacatcccctcctttatatgggt 829  Q
    ||||| |||||||||||||| |||||||||||||| |||||||||||||||    
T  26159747 tttagttatagttatcatgactggtggaaacatccgctcctttatatgggt 26159797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 736 - 813
Target Start/End: Complemental strand, 6214866 - 6214789
Alignment:
Q  736 taaattgcattctttcttatggttgaaatctaaaaaggataattttagctatagttatcatgattggtggaaacatcc 813  Q
    |||| |||||| ||||||||||||||||||| || |||| |  ||||||| ||| | |||||||||||||||||||||    
T  6214866 taaaatgcattatttcttatggttgaaatctcaacaggaaatctttagctttagctttcatgattggtggaaacatcc 6214789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 641 - 699
Target Start/End: Original strand, 13760880 - 13760938
Alignment:
Q  641 atttggtttgctacggtttgggctatttgaaaggaaaggaataatcgtgtatttcaaaa 699  Q
    |||||||||||||| |||||||  || ||||||||||||||||| ||||| ||||||||    
T  13760880 atttggtttgctactgtttgggtgatatgaaaggaaaggaataaccgtgtctttcaaaa 13760938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 746 - 829
Target Start/End: Complemental strand, 19480746 - 19480663
Alignment:
Q  746 tctttcttatggttgaaatctaaaaaggataattttagctatagttatcatgattggtggaaacatcccctcctttatatgggt 829  Q
    |||||||||||||||||||| ||| |||     ||||| || ||||| ||||| ||||||||||||||||| |||| |||||||    
T  19480746 tctttcttatggttgaaatcaaaacaggggctatttagttacagttaccatgactggtggaaacatccccttctttgtatgggt 19480663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1185 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1185
Description:

Target: scaffold1185; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 778 - 834
Target Start/End: Original strand, 2096 - 2152
Alignment:
Q  778 ttttagctatagttatcatgattggtggaaacatcccctcctttatatgggtatcca 834  Q
    ||||||||||| ||||||||| |||||||||||||| ||||||| |||| |||||||    
T  2096 ttttagctatacttatcatgaatggtggaaacatcctctcctttgtatgagtatcca 2152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 779 - 829
Target Start/End: Complemental strand, 28569853 - 28569803
Alignment:
Q  779 tttagctatagttatcatgattggtggaaacatcccctcctttatatgggt 829  Q
    |||||||||||||||||||| |||||||||||||  ||||||| |||||||    
T  28569853 tttagctatagttatcatgactggtggaaacatcaactcctttgtatgggt 28569803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 746 - 835
Target Start/End: Original strand, 35077484 - 35077573
Alignment:
Q  746 tctttcttatggttgaaatctaaaaaggataattttagctatagttatcatgattggtggaaacatcccctcctttatatgggtatccag 835  Q
    |||| ||||||||||||||| ||| |||     |||||||| ||||||||||| |||||||| ||||| ||||||| ||||||| |||||    
T  35077484 tcttacttatggttgaaatcaaaacagggactatttagctacagttatcatgactggtggaatcatcctctcctttgtatgggtgtccag 35077573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 778 - 829
Target Start/End: Original strand, 9595107 - 9595158
Alignment:
Q  778 ttttagctatagttatcatgattggtggaaacatcccctcctttatatgggt 829  Q
    ||||||||||||||||||||||||||||||| || | |  ||||||||||||    
T  9595107 ttttagctatagttatcatgattggtggaaaaattcacctctttatatgggt 9595158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 341 - 402
Target Start/End: Original strand, 34423972 - 34424033
Alignment:
Q  341 attccgtcaaaggtgtctctatttgtgtggcgatttctaagaaacagacttcctacaaaaga 402  Q
    ||||| |||||||||||||| |||||||||||  ||||  | ||||||||||| ||||||||    
T  34423972 attccttcaaaggtgtctctgtttgtgtggcgtcttcttcgcaacagacttcccacaaaaga 34424033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 736 - 813
Target Start/End: Original strand, 34424389 - 34424466
Alignment:
Q  736 taaattgcattctttcttatggttgaaatctaaaaaggataattttagctatagttatcatgattggtggaaacatcc 813  Q
    ||||||||| |||||||||||  ||||||| ||| |||     |||||||| | ||||||||||||||||||||||||    
T  34424389 taaattgcactctttcttatgactgaaatcgaaacagggggcctttagctacaattatcatgattggtggaaacatcc 34424466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 635 - 704
Target Start/End: Original strand, 39366058 - 39366127
Alignment:
Q  635 agaatcatttggtttgctacggtttgggctatttgaaaggaaaggaataatcgtgtatttcaaaacatgg 704  Q
    ||||| ||||||| |||| | ||||||| | |||| |||||||||||| | |||||||| ||||||||||    
T  39366058 agaattatttggtgtgctgctgtttgggttctttggaaggaaaggaatgaccgtgtattccaaaacatgg 39366127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 784 - 821
Target Start/End: Complemental strand, 18377737 - 18377700
Alignment:
Q  784 ctatagttatcatgattggtggaaacatcccctccttt 821  Q
    |||||||||||||||||||||||||||||| |||||||    
T  18377737 ctatagttatcatgattggtggaaacatcctctccttt 18377700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 789 - 826
Target Start/End: Complemental strand, 30075812 - 30075775
Alignment:
Q  789 gttatcatgattggtggaaacatcccctcctttatatg 826  Q
    ||||||||||||||||||||||||| ||||||| ||||    
T  30075812 gttatcatgattggtggaaacatccgctcctttgtatg 30075775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 341 - 408
Target Start/End: Original strand, 23750 - 23817
Alignment:
Q  341 attccgtcaaaggtgtctctatttgtgtggcgatttctaagaaacagacttcctacaaaagacaatct 408  Q
    ||||| |||||||| |||||||||||||||||  | ||  | ||||| ||||||||||||||||||||    
T  23750 attccttcaaaggtttctctatttgtgtggcgcctccttcgcaacaggcttcctacaaaagacaatct 23817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000008; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 779 - 813
Target Start/End: Complemental strand, 54824786 - 54824752
Alignment:
Q  779 tttagctatagttatcatgattggtggaaacatcc 813  Q
    |||||||| ||||||||||||||||||||||||||    
T  54824786 tttagctacagttatcatgattggtggaaacatcc 54824752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 789 - 826
Target Start/End: Complemental strand, 14546544 - 14546507
Alignment:
Q  789 gttatcatgattggtggaaacatcccctcctttatatg 826  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  14546544 gttatcatgattggtggaaacatctactcctttatatg 14546507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 639 - 704
Target Start/End: Complemental strand, 19497542 - 19497477
Alignment:
Q  639 tcatttggtttgctacggtttgggctatttgaaaggaaaggaataatcgtgtatttcaaaacatgg 704  Q
    |||||||||||||  |  |||||| |||||| |||||||||||| | |||||||| ||||||||||    
T  19497542 tcatttggtttgcctctatttgggttatttggaaggaaaggaatcaccgtgtattccaaaacatgg 19497477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 746 - 834
Target Start/End: Original strand, 46219308 - 46219396
Alignment:
Q  746 tctttcttatggttgaaatctaaaaag-gataattttagctatagttatcatgattggtggaaacatcccctcctttatatgggtatcca 834  Q
    |||||||||||||||||||| |||  | ||| | |||||||| ||||| ||||| |||||||| |||||||| |||| |||||| |||||    
T  46219308 tctttcttatggttgaaatcaaaaccgagatta-tttagctacagttaccatgagtggtggaatcatccccttctttgtatgggcatcca 46219396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 736 - 813
Target Start/End: Complemental strand, 48104467 - 48104390
Alignment:
Q  736 taaattgcattctttcttatggttgaaatctaaaaaggataattttagctatagttatcatgattggtggaaacatcc 813  Q
    |||| |||| ||||||||||||||||||| | || |||  |  || |||| ||| |||||||||||||||||||||||    
T  48104467 taaaatgcactctttcttatggttgaaatttcaacaggcaaccttcagctttagctatcatgattggtggaaacatcc 48104390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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