View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1642_high_3 (Length: 283)
Name: NF1642_high_3
Description: NF1642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1642_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 82; Significance: 9e-39; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 120 - 237
Target Start/End: Complemental strand, 1342660 - 1342543
Alignment:
| Q |
120 |
tttggggcttgatattgaaaaatgtctacgaggaattaacttagtggtaagagtttaacattgtaaaattgtatatttaattgtagatccgatttctgca |
219 |
Q |
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| T |
1342660 |
tttggggtttgatattgaaaaatgtccatgaggaattaacttagtggtaagagtttaacgttgtaaaattgcatatttaatagtagatccgattcctgca |
1342561 |
T |
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| Q |
220 |
tattttacattttacaag |
237 |
Q |
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| T |
1342560 |
tattttacaagttacaag |
1342543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 14 - 135
Target Start/End: Complemental strand, 1342797 - 1342674
Alignment:
| Q |
14 |
catattttacctaacaaacaacaaaaatttactggtgaaacaccatatact-cactttgctcttagcttgtttattta-atcatgcaataaaagtaacat |
111 |
Q |
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| T |
1342797 |
catattttacctaacaaacaacaaaaatttactggtgaaacaccatatactacactttgctcttaaactgtttatttatttcatgcaacaaaagtaactt |
1342698 |
T |
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| Q |
112 |
tattttaatttggggcttgatatt |
135 |
Q |
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| T |
1342697 |
tattttagtttggggtttgatatt |
1342674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 1326224 - 1326111
Alignment:
| Q |
18 |
ttttacctaacaaacaacaaaaatttactg------gtgaaacaccatatact-cactttgctcttagcttgtttatttaat----catgcaataaaagt |
106 |
Q |
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||||||||||||||||||||||||||| || ||||||||||||| | | ||||||||||||| |||||||||||| | |||||| |||||| |
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| T |
1326224 |
ttttacctaacaaacaacaaaaatttagtggtgaaagtgaaacaccataaattacactttgctcttaacttgtttatttacttatatatgcaacaaaagt |
1326125 |
T |
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| Q |
107 |
aacattattttaat |
120 |
Q |
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| T |
1326124 |
aacattattataat |
1326111 |
T |
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