View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1642_high_5 (Length: 256)

Name: NF1642_high_5
Description: NF1642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1642_high_5
NF1642_high_5
[»] chr3 (13 HSPs)
chr3 (31-103)||(31350512-31350584)
chr3 (31-103)||(49875887-49875958)
chr3 (24-103)||(31664693-31664772)
chr3 (24-103)||(31930941-31931020)
chr3 (24-99)||(37143191-37143262)
chr3 (31-100)||(46114270-46114339)
chr3 (34-99)||(31425626-31425691)
chr3 (31-103)||(15927501-15927573)
chr3 (31-99)||(33976304-33976372)
chr3 (31-100)||(50886285-50886352)
chr3 (31-92)||(41610408-41610469)
chr3 (12-72)||(42546695-42546755)
chr3 (31-91)||(41448101-41448161)
[»] chr1 (6 HSPs)
chr1 (32-103)||(46859524-46859595)
chr1 (26-104)||(18982591-18982669)
chr1 (31-103)||(36775198-36775270)
chr1 (139-224)||(42331613-42331694)
chr1 (31-103)||(5466241-5466313)
chr1 (32-72)||(15067765-15067805)
[»] chr6 (7 HSPs)
chr6 (32-100)||(2204312-2204380)
chr6 (26-103)||(10729656-10729736)
chr6 (31-101)||(34383766-34383836)
chr6 (31-103)||(28982547-28982619)
chr6 (31-103)||(5456756-5456828)
chr6 (31-103)||(354365-354436)
chr6 (31-85)||(3339422-3339478)
[»] chr7 (4 HSPs)
chr7 (31-103)||(2819346-2819418)
chr7 (31-103)||(12651228-12651300)
chr7 (32-100)||(19223540-19223608)
chr7 (31-103)||(11778671-11778743)
[»] chr4 (9 HSPs)
chr4 (137-252)||(41805809-41805920)
chr4 (40-104)||(3698415-3698479)
chr4 (169-252)||(39599339-39599417)
chr4 (31-72)||(7146069-7146110)
chr4 (24-100)||(25467880-25467956)
chr4 (31-85)||(51734556-51734611)
chr4 (31-100)||(33085252-33085321)
chr4 (75-103)||(4272474-4272502)
chr4 (31-71)||(32871768-32871808)
[»] chr8 (6 HSPs)
chr8 (34-103)||(40649560-40649629)
chr8 (31-103)||(12171996-12172069)
chr8 (31-103)||(12416424-12416497)
chr8 (31-72)||(31266171-31266212)
chr8 (57-100)||(44952746-44952789)
chr8 (31-103)||(7612115-7612187)
[»] chr5 (6 HSPs)
chr5 (169-254)||(745810-745892)
chr5 (31-86)||(16594299-16594354)
chr5 (208-256)||(3262402-3262450)
chr5 (32-103)||(25603574-25603643)
chr5 (23-72)||(21062236-21062285)
chr5 (32-92)||(13739530-13739590)
[»] scaffold0481 (1 HSPs)
scaffold0481 (31-103)||(1107-1179)
[»] scaffold0295 (1 HSPs)
scaffold0295 (26-72)||(3596-3642)
[»] chr2 (4 HSPs)
chr2 (31-101)||(41317290-41317360)
chr2 (31-72)||(40210005-40210046)
chr2 (31-72)||(43520572-43520613)
chr2 (31-71)||(32900265-32900305)


Alignment Details
Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 31 - 103
Target Start/End: Complemental strand, 31350584 - 31350512
Alignment:
Q  31 ttctctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtt 103  Q
    |||||||||||||||| ||||||||||||||||||| |||||  |||||||||||||||||||||||||||||    
T  31350584 ttctctctatattgttattgtccaataaaaagagagaaaaaaagttgtcactaaaagttgttggaaattggtt 31350512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 31 - 103
Target Start/End: Original strand, 49875887 - 49875958
Alignment:
Q  31 ttctctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtt 103  Q
    |||||||| ||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  49875887 ttctctctctattgttattgtccaatgaaaagagaggaaaaa-attgtcactaaaagttgttggaaattggtt 49875958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 103
Target Start/End: Original strand, 31664693 - 31664772
Alignment:
Q  24 acttttattctctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtt 103  Q
    ||||||||||||||| | || || || |||||| |||||||||||||||| || ||||||||||||||||||||||||||    
T  31664693 acttttattctctctctttttttattctccaatgaaaagagaggaaaaaggttatcactaaaagttgttggaaattggtt 31664772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 103
Target Start/End: Complemental strand, 31931020 - 31930941
Alignment:
Q  24 acttttattctctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtt 103  Q
    ||||||||| ||||| ||||||| || |||||| |||||||||||||||| || ||||||||| ||||||||||||||||    
T  31931020 acttttattatctctctattgttattctccaatgaaaagagaggaaaaaggttatcactaaaatttgttggaaattggtt 31930941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 99
Target Start/End: Original strand, 37143191 - 37143262
Alignment:
Q  24 acttttattctctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaatt 99  Q
    |||||||||||||||||  |||| |||||||||||||||||  ||||||| |||||||||||||||||||||||||    
T  37143191 acttttattctctctat--tgttattgtccaataaaaagag--gaaaaaggttgtcactaaaagttgttggaaatt 37143262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 31 - 100
Target Start/End: Complemental strand, 46114339 - 46114270
Alignment:
Q  31 ttctctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattg 100  Q
    |||||||| ||||||| |||| ||||| ||||||||||||||| ||||||| ||||||||||||||||||    
T  46114339 ttctctctctattgttattgttcaatagaaagagaggaaaaaggttgtcaccaaaagttgttggaaattg 46114270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 31425626 - 31425691
Alignment:
Q  34 tctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaatt 99  Q
    ||||| ||||||| |||||||||||||||||||||||||| |||||| ||||| || ||| |||||    
T  31425626 tctctctattgttattgtccaataaaaagagaggaaaaaggttgtcattaaaaattattgaaaatt 31425691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 103
Target Start/End: Complemental strand, 15927573 - 15927501
Alignment:
Q  31 ttctctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtt 103  Q
    |||||||  ||||||| ||||||||||||||||| | |||||  |||||||||||| || |||||||||||||    
T  15927573 ttctctcactattgttattgtccaataaaaagagcgaaaaaaagttgtcactaaaaattattggaaattggtt 15927501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 33976372 - 33976304
Alignment:
Q  31 ttctctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaatt 99  Q
    |||||||| ||||||| || |||||||||||||||||||||   |||||||||||| |||||| |||||    
T  33976372 ttctctctctattgttattatccaataaaaagagaggaaaagtgttgtcactaaaaattgttgaaaatt 33976304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 100
Target Start/End: Original strand, 50886285 - 50886352
Alignment:
Q  31 ttctctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattg 100  Q
    |||||||| ||||||| |||||||||||||  ||||||||||  |||||||| |||||||||| ||||||    
T  50886285 ttctctctctattgttattgtccaataaaa--agaggaaaaacgttgtcactgaaagttgttgaaaattg 50886352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 41610408 - 41610469
Alignment:
Q  31 ttctctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgtt 92  Q
    |||||||| ||||||| ||||| ||||||||||||| |||||  ||||||||| ||||||||    
T  41610408 ttctctctctattgttattgtctaataaaaagagagaaaaaatgttgtcactagaagttgtt 41610469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 42546755 - 42546695
Alignment:
Q  12 tctcatacttgcacttttattctctctatattgttgttgtccaataaaaagagaggaaaaa 72  Q
    ||||||||||| | ||||||||||||| ||| ||| || |||||||||||||||| |||||    
T  42546755 tctcatacttgtagttttattctctctctatcgtttttatccaataaaaagagagaaaaaa 42546695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 41448161 - 41448101
Alignment:
Q  31 ttctctctatattgttgttgtccaataaaaagagaggaaaaa-gattgtcactaaaagttgt 91  Q
    |||||||| ||||||| |||||| |||||||||||| ||||| ||||||||| |||||||||    
T  41448161 ttctctctctattgtttttgtccgataaaaagagagaaaaaatgattgtcac-aaaagttgt 41448101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 32 - 103
Target Start/End: Original strand, 46859524 - 46859595
Alignment:
Q  32 tctctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtt 103  Q
    ||||||| ||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  46859524 tctctctctattgttattgtctaataaaaagagaggaaaaagactgtcactaaaagttgttggaaattggtt 46859595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 104
Target Start/End: Original strand, 18982591 - 18982669
Alignment:
Q  26 ttttattctctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtta 104  Q
    ||||||||||||| |||||||||| ||||||||||| |||  |||||  |||||||  |||||||||||||||||||||    
T  18982591 ttttattctctctctattgttgttatccaataaaaaaagataaaaaatgttgtcacccaaagttgttggaaattggtta 18982669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 103
Target Start/End: Original strand, 36775198 - 36775270
Alignment:
Q  31 ttctctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtt 103  Q
    |||||| | ||||||| |||||||||||||| |||| |||||| |||||||  ||||||||||||||||||||    
T  36775198 ttctctttctattgttattgtccaataaaaaaagagaaaaaaggttgtcacccaaagttgttggaaattggtt 36775270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 139 - 224
Target Start/End: Original strand, 42331613 - 42331694
Alignment:
Q  139 aataacgtcagtttaacactgataagttaaaagggaggttggtgttatttgtgaaaatacagggggcggtgtaagtgacatattaa 224  Q
    ||||||| ||||||||||||| ||  ||||| |||||||| |||||||||||||||||| ||||   |||||||||||||||||||    
T  42331613 aataacgccagtttaacactgttacattaaa-gggaggttagtgttatttgtgaaaatagaggg---ggtgtaagtgacatattaa 42331694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 103
Target Start/End: Complemental strand, 5466313 - 5466241
Alignment:
Q  31 ttctctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtt 103  Q
    |||| ||| ||||||| ||||||||||| ||| |||||||||| |||||||  |||||||||  |||||||||    
T  5466313 ttctttctctattgttattgtccaataagaagtgaggaaaaaggttgtcacccaaagttgtttaaaattggtt 5466241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 15067805 - 15067765
Alignment:
Q  32 tctctctatattgttgttgtccaataaaaagagaggaaaaa 72  Q
    ||||||| ||||||||||||||||||| |||||||||||||    
T  15067805 tctctctctattgttgttgtccaataagaagagaggaaaaa 15067765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 32 - 100
Target Start/End: Complemental strand, 2204380 - 2204312
Alignment:
Q  32 tctctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattg 100  Q
    ||||||| |||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2204380 tctctctctattattattgtccaataaaaagagaggaaaaaggttgtcactaaaagttgttggaaattg 2204312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 10729656 - 10729736
Alignment:
Q  26 ttttattctctctatattgttgtt---gtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtt 103  Q
    |||| |||||||| ||||||||||   ||||| |||||||||||||||||| |||||||||||||||||||||||||||||    
T  10729656 tttttttctctctctattgttgttattgtccagtaaaaagagaggaaaaaggttgtcactaaaagttgttggaaattggtt 10729736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 31 - 101
Target Start/End: Complemental strand, 34383836 - 34383766
Alignment:
Q  31 ttctctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattgg 101  Q
    |||||||| ||||||| |||||||||||||||||||||||| | |||||||||||||||||| ||||||||    
T  34383836 ttctctctctattgttattgtccaataaaaagagaggaaaagggttgtcactaaaagttgttagaaattgg 34383766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 31 - 103
Target Start/End: Complemental strand, 28982619 - 28982547
Alignment:
Q  31 ttctctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtt 103  Q
    |||||||  |||| || |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  28982619 ttctctccctattattattgtccaataaaaagagaggaaaaaggttgtcactaaaagttgttgaaaattggtt 28982547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 103
Target Start/End: Complemental strand, 5456828 - 5456756
Alignment:
Q  31 ttctctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtt 103  Q
    |||||||| ||||||| ||||||||||||||||| | |||||  || ||||||||||||||||||||||||||    
T  5456828 ttctctctctattgttattgtccaataaaaagagcgaaaaaatgttatcactaaaagttgttggaaattggtt 5456756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 103
Target Start/End: Original strand, 354365 - 354436
Alignment:
Q  31 ttctctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtt 103  Q
    |||||||| ||||||| ||||||||||||| ||||||||||| ||| ||  ||||||||||||||||||||||    
T  354365 ttctctctctattgttattgtccaataaaa-gagaggaaaaaaattatccttaaaagttgttggaaattggtt 354436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 85
Target Start/End: Complemental strand, 3339478 - 3339422
Alignment:
Q  31 ttctctctatattgttgttgtccaataaaaagagaggaaa--aagattgtcactaaa 85  Q
    |||||||| ||||||| ||| ||||||||||||||| |||  |||||||||||||||    
T  3339478 ttctctctctattgtttttgaccaataaaaagagagaaaaacaagattgtcactaaa 3339422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 31 - 103
Target Start/End: Original strand, 2819346 - 2819418
Alignment:
Q  31 ttctctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtt 103  Q
    |||| ||| ||||||| |||||||||||||||||||||||||| |||||||||||| |||||| |||||||||    
T  2819346 ttctgtctctattgttattgtccaataaaaagagaggaaaaaggttgtcactaaaaattgttgaaaattggtt 2819418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 103
Target Start/End: Complemental strand, 12651300 - 12651228
Alignment:
Q  31 ttctctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtt 103  Q
    |||||||| ||||||| |||||||||| ||| ||||||||||  ||||||| |||||||||||||||||||||    
T  12651300 ttctctctctattgttattgtccaatagaaaaagaggaaaaaagttgtcaccaaaagttgttggaaattggtt 12651228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 100
Target Start/End: Original strand, 19223540 - 19223608
Alignment:
Q  32 tctctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattg 100  Q
    ||||||| ||||||| ||||||||||||||||||||||||| ||||||| ||||| || ||| ||||||    
T  19223540 tctctctctattgttattgtccaataaaaagagaggaaaaaaattgtcattaaaaattattgaaaattg 19223608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 103
Target Start/End: Original strand, 11778671 - 11778743
Alignment:
Q  31 ttctctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtt 103  Q
    |||||||| |||| || ||||||||||| |||  || ||||| |||||| ||||||||||||  |||||||||    
T  11778671 ttctctctctattattattgtccaataagaaggaagaaaaaaaattgtccctaaaagttgtttaaaattggtt 11778743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 137 - 252
Target Start/End: Original strand, 41805809 - 41805920
Alignment:
Q  137 ctaataacgtcagtttaacactgataagttaaaagggaggttggtgttatttgtgaaaatacagggggcggtgtaagtgacatattaacatacttcaagg 236  Q
    ||||||||| ||| ||||||||| ||  ||||| |||||||| |||||||| ||||||| | ||||||   ||||||||||||| ||||||| |||||||    
T  41805809 ctaataacgccagcttaacactgttacattaaa-gggaggttagtgttattggtgaaaacagaggggg---tgtaagtgacataataacatatttcaagg 41805904  T
Q  237 gaggtgagtataattt 252  Q
    ||||||||| ||||||    
T  41805905 gaggtgagtgtaattt 41805920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 3698415 - 3698479
Alignment:
Q  40 tattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtta 104  Q
    ||||||| |||||||||||||||||||||||||  |||||||||||| |||||||||||| ||||    
T  3698415 tattgttattgtccaataaaaagagaggaaaaaagttgtcactaaaaattgttggaaattagtta 3698479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 169 - 252
Target Start/End: Complemental strand, 39599417 - 39599339
Alignment:
Q  169 aagggaggttggtgttatttgtgaaaatacagggggcggtgtaagtgacatattaacatacttcaagggaggtgagtataattt 252  Q
    |||||||||| | |||||||||||||||| ||||||   || |||||||||  |||||||| ||||||||||||||| ||||||    
T  39599417 aagggaggttagcgttatttgtgaaaataaaggggg---tgcaagtgacat--taacatacctcaagggaggtgagtgtaattt 39599339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 72
Target Start/End: Complemental strand, 7146110 - 7146069
Alignment:
Q  31 ttctctctatattgttgttgtccaataaaaagagaggaaaaa 72  Q
    |||||||| ||||||| |||||||||||||||||||||||||    
T  7146110 ttctctctctattgttattgtccaataaaaagagaggaaaaa 7146069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 25467880 - 25467956
Alignment:
Q  24 acttttattctctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattg 100  Q
    ||||||||||||||| ||||||| |  |||||||| || |||| ||||| ||| || ||||||||||||| ||||||    
T  25467880 acttttattctctctttattgttatcatccaataagaatagagaaaaaaaattatccctaaaagttgttgaaaattg 25467956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 85
Target Start/End: Complemental strand, 51734611 - 51734556
Alignment:
Q  31 ttctctctatattgttgttgtccaataaaaagagag-gaaaaagattgtcactaaa 85  Q
    |||||||| ||||||| ||||||||||| |||||||  ||||||||||||||||||    
T  51734611 ttctctctctattgttattgtccaataagaagagagaaaaaaagattgtcactaaa 51734556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 100
Target Start/End: Original strand, 33085252 - 33085321
Alignment:
Q  31 ttctctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattg 100  Q
    |||||||| ||||||| |  ||||||||||| | |||||||||||||||  |||||||| ||| ||||||    
T  33085252 ttctctctctattgttatcatccaataaaaataaaggaaaaagattgtccataaaagttattgaaaattg 33085321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 103
Target Start/End: Complemental strand, 4272502 - 4272474
Alignment:
Q  75 ttgtcactaaaagttgttggaaattggtt 103  Q
    |||||||||||||||||||||||||||||    
T  4272502 ttgtcactaaaagttgttggaaattggtt 4272474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 32871808 - 32871768
Alignment:
Q  31 ttctctctatattgttgttgtccaataaaaagagaggaaaa 71  Q
    |||||||| ||||||| || |||||||||||||||||||||    
T  32871808 ttctctctctattgtttttatccaataaaaagagaggaaaa 32871768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 34 - 103
Target Start/End: Original strand, 40649560 - 40649629
Alignment:
Q  34 tctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtt 103  Q
    ||||| ||||| | |||||||||||||| ||||||||||| |||||||||||| |||||| |||||||||    
T  40649560 tctctctattgctattgtccaataaaaatagaggaaaaaggttgtcactaaaaattgttgaaaattggtt 40649629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 103
Target Start/End: Complemental strand, 12172069 - 12171996
Alignment:
Q  31 ttctctctatattgttgttgtccaa-taaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtt 103  Q
    |||||||| ||||||| |||||||| ||| ||| |||||||||| |||||||||||| |||||  |||||||||    
T  12172069 ttctctctctattgttattgtccaaataagaagggaggaaaaaggttgtcactaaaatttgtttaaaattggtt 12171996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 103
Target Start/End: Complemental strand, 12416497 - 12416424
Alignment:
Q  31 ttctctctatattgttgttgtccaa-taaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtt 103  Q
    |||||||| ||||||| |||||||| ||| ||| |||||||||| |||||||||||| |||||  |||||||||    
T  12416497 ttctctctctattgttattgtccaaataagaagggaggaaaaaggttgtcactaaaatttgtttaaaattggtt 12416424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 72
Target Start/End: Complemental strand, 31266212 - 31266171
Alignment:
Q  31 ttctctctatattgttgttgtccaataaaaagagaggaaaaa 72  Q
    |||||||| ||||||| |||||||||||||||||||||||||    
T  31266212 ttctctctctattgttattgtccaataaaaagagaggaaaaa 31266171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 100
Target Start/End: Original strand, 44952746 - 44952789
Alignment:
Q  57 aaaaagagaggaaaaagattgtcactaaaagttgttggaaattg 100  Q
    |||||||||| ||||||||||||||||||| ||||| |||||||    
T  44952746 aaaaagagagaaaaaagattgtcactaaaaattgttagaaattg 44952789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 103
Target Start/End: Complemental strand, 7612187 - 7612115
Alignment:
Q  31 ttctctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtt 103  Q
    |||||||| |||| || ||||| ||||| |||  || |||||||||||| ||||||||||||  |||||||||    
T  7612187 ttctctctctattattattgtctaataagaaggaagaaaaaagattgtccctaaaagttgtttaaaattggtt 7612115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 169 - 254
Target Start/End: Complemental strand, 745892 - 745810
Alignment:
Q  169 aagggaggttggtgttatttgtgaaaatacagggggcggtgtaagtgacatattaacatacttcaagggaggtgagtataatttac 254  Q
    |||||||||| ||||||||||| |||||  ||||||   ||||||||| ||||||||||||||  |||||||||||| ||||||||    
T  745892 aagggaggttagtgttatttgttaaaatcgaggggg---tgtaagtgatatattaacatactttgagggaggtgagtgtaatttac 745810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 86
Target Start/End: Complemental strand, 16594354 - 16594299
Alignment:
Q  31 ttctctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaa 86  Q
    |||||||| ||||||| ||||||||||||||||||||||| |  ||||||||||||    
T  16594354 ttctctctctattgttattgtccaataaaaagagaggaaataagttgtcactaaaa 16594299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 256
Target Start/End: Original strand, 3262402 - 3262450
Alignment:
Q  208 tgtaagtgacatattaacatacttcaagggaggtgagtataatttaccc 256  Q
    ||||||||| | |||||||||| ||||||||||||||| ||||||||||    
T  3262402 tgtaagtgataaattaacatacctcaagggaggtgagtgtaatttaccc 3262450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 25603643 - 25603574
Alignment:
Q  32 tctctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtt 103  Q
    ||||||| ||||||| |||||||||||||  ||||||||||  || ||||||||| ||||| ||||||||||    
T  25603643 tctctctctattgttattgtccaataaaa--agaggaaaaatgttatcactaaaaattgttagaaattggtt 25603574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 21062285 - 21062236
Alignment:
Q  23 cacttttattctctctatattgttgttgtccaataaaaagagaggaaaaa 72  Q
    ||||||| |||||||| ||||||| ||||||||||| |||| ||||||||    
T  21062285 cacttttgttctctctttattgttattgtccaataagaagaaaggaaaaa 21062236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 13739530 - 13739590
Alignment:
Q  32 tctctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgtt 92  Q
    ||||||| |||| || |||||||||||||||  || |||||| ||||| ||||||||||||    
T  13739530 tctctctctattattattgtccaataaaaaggaagaaaaaaggttgtccctaaaagttgtt 13739590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 103
Target Start/End: Complemental strand, 1179 - 1107
Alignment:
Q  31 ttctctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattggtt 103  Q
    |||||||| ||||||| ||||||||||| ||| |||||||||| |||||||  |||||||||  |||||||||    
T  1179 ttctctctctattgttattgtccaataagaagtgaggaaaaaggttgtcacccaaagttgtttaaaattggtt 1107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 72
Target Start/End: Complemental strand, 3642 - 3596
Alignment:
Q  26 ttttattctctctatattgttgttgtccaataaaaagagaggaaaaa 72  Q
    ||||||||||||| ||||||| || |||||||| |||||||||||||    
T  3642 ttttattctctctctattgtttttatccaataagaagagaggaaaaa 3596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 101
Target Start/End: Original strand, 41317290 - 41317360
Alignment:
Q  31 ttctctctatattgttgttgtccaataaaaagagaggaaaaagattgtcactaaaagttgttggaaattgg 101  Q
    |||||||| ||||||  |||| |||||| || |||| |||||||||||| | ||||||||||| |||||||    
T  41317290 ttctctctctattgtcattgttcaataagaatagagaaaaaagattgtcccaaaaagttgttgaaaattgg 41317360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 72
Target Start/End: Complemental strand, 40210046 - 40210005
Alignment:
Q  31 ttctctctatattgttgttgtccaataaaaagagaggaaaaa 72  Q
    |||||||| ||||||| ||||||||||| |||||||||||||    
T  40210046 ttctctctctattgttattgtccaataagaagagaggaaaaa 40210005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 72
Target Start/End: Complemental strand, 43520613 - 43520572
Alignment:
Q  31 ttctctctatattgttgttgtccaataaaaagagaggaaaaa 72  Q
    |||| ||| ||||||||||||||||||| |||||||||||||    
T  43520613 ttctttctttattgttgttgtccaataataagagaggaaaaa 43520572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 32900305 - 32900265
Alignment:
Q  31 ttctctctatattgttgttgtccaataaaaagagaggaaaa 71  Q
    |||||||| ||||||| || |||||||||||||||||||||    
T  32900305 ttctctctctattgttcttatccaataaaaagagaggaaaa 32900265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University