View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1642_low_2 (Length: 304)
Name: NF1642_low_2
Description: NF1642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1642_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 8 - 294
Target Start/End: Original strand, 5031425 - 5031710
Alignment:
| Q |
8 |
tataatcttatactaacgggccctaagcatagtgcacaaaaagggctgaagaacaaactttttctgaggtgtagctctggcgtatttttgtttttggtag |
107 |
Q |
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| T |
5031425 |
tataatcttatactaacgggccctaagcatagtgcacaaaaagggctgaagaacaaactttttctgaggtgtagctctggcgtatttttgtttttggtag |
5031524 |
T |
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| Q |
108 |
atgtagcaagcaagcaattaaggttcatttgtagaaaatattgtttcagaagattatggtaaaaaatcattgtacaatcgataattgttttcttcacaaa |
207 |
Q |
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| T |
5031525 |
atgtagcaagcaagcaattaagggtcatttgtagaaaatattgtttcagaagattatggt-aaaaatcattgtacaatcgataattgttttcttcacaaa |
5031623 |
T |
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| Q |
208 |
gaatgtttgctgccattgtttgagctgttcacatttgtaccaatttgaattttgaactacttgcatttcacctttatatcgcctttg |
294 |
Q |
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| T |
5031624 |
gaatgttagctgccattgtttgagctgttcacatttgtaccaatttgaattttgaactacttgcatttcacctttatatcgcctttg |
5031710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 12 - 256
Target Start/End: Original strand, 7989064 - 7989297
Alignment:
| Q |
12 |
atcttatactaacgggccctaagcatagtgcacaaaaagggctgaagaacaaacttttt-ctgaggtgtagctctggcgtatttttgtttttggtagatg |
110 |
Q |
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|||||| || ||||||||||||||| | ||||||||||||| |||||||||||||||| || | ||| || |||| | ||||||||||||||||||||| |
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| T |
7989064 |
atcttaaacaaacgggccctaagcacacggcacaaaaagggccgaagaacaaacttttttctcaagtgcagatctgacatatttttgtttttggtagatg |
7989163 |
T |
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| Q |
111 |
tagcaagcaagcaattaaggttcatttgtagaaaatattgtttcagaagattatggtaaaaaatcattgtacaatcgataattgttttcttcacaaagaa |
210 |
Q |
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| T |
7989164 |
ta-----------attaaggttcatttgtagaaaatattgtttgagataattatggtaaaaa-tgattgtacaatagataattgatttcttcacaaagaa |
7989251 |
T |
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| Q |
211 |
tgtttgctgccattgtttgagctgttcacatttgtaccaatttgaa |
256 |
Q |
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| T |
7989252 |
tgtttgctgcaattgtttgagctattcacatttgtaccaacttgaa |
7989297 |
T |
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