View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1642_low_6 (Length: 252)
Name: NF1642_low_6
Description: NF1642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1642_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 16 - 249
Target Start/End: Complemental strand, 28464616 - 28464383
Alignment:
| Q |
16 |
tttgtatcttgtcataccaaatagctagcatgaaaagtgcattaggaagttggtaaaacccaaatgcaaaatctcttgaaggagagagccatcgggttgt |
115 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28464616 |
tttgtatcttgtcataccaaatagctagcaagaaaagtgcattaggaagttggtaaaacccaaatgcaaaatctcttgaaggagagagccatcgggttgt |
28464517 |
T |
|
| Q |
116 |
cccattgccagctgtaagtgactcaccaacactcacactcacaccttgatccaatgattttaagctgcatataatacaataataattcatttatctatca |
215 |
Q |
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||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28464516 |
cccattgccagctgtaagtgactcaccaacactgacactcaccccttgatccaatgattttaagctgcatataatacaataataattcatttatctatca |
28464417 |
T |
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| Q |
216 |
gtacttgtatttgatgattcaattgatcttttat |
249 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
28464416 |
gtacttgtatttgatgattcaattgatcttttat |
28464383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 17 - 186
Target Start/End: Complemental strand, 28486389 - 28486220
Alignment:
| Q |
17 |
ttgtatcttgtcataccaaatagctagcatgaaaagtgcattaggaagttggtaaaacccaaatgcaaaatctcttgaaggagagagccatcgggttgtc |
116 |
Q |
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|||||||||||||||||| |||||||||| |||||| ||| ||||||||||||||| |||||||||||||||| |||||||| ||||||||| |||||| |
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| T |
28486389 |
ttgtatcttgtcataccatatagctagcaagaaaagatcatcaggaagttggtaaaatccaaatgcaaaatctcctgaaggagtgagccatcgtgttgtc |
28486290 |
T |
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| Q |
117 |
ccattgccagctgtaagtgactcaccaacactcacactcacaccttgatccaatgattttaagctgcata |
186 |
Q |
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|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
28486289 |
tcatttccagcagtaagtgactcaccaacactcacactcacaccttgatccaatgattctaagctgcata |
28486220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 17 - 186
Target Start/End: Complemental strand, 28443766 - 28443603
Alignment:
| Q |
17 |
ttgtatcttgtcataccaaatagctagcatgaaaagtgcattaggaagttggtaaaacccaaatgcaaaatctcttgaaggagagagccatcgggttgtc |
116 |
Q |
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|||||||||||||||||| |||||||||| |||||| ||||||||||||||||||| ||||||| |||||||| ||||||||||| ||| || ||||| |
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| T |
28443766 |
ttgtatcttgtcataccatatagctagcaagaaaagctcattaggaagttggtaaaatccaaatgaaaaatctcctgaaggagagaaccaacgagttgtg |
28443667 |
T |
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| Q |
117 |
ccattgccagctgtaagtgactcaccaacactcacactcacaccttgatccaatgattttaagctgcata |
186 |
Q |
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||| ||||||| |||||||||||||| ||| | ||||||||||||||||||| ||||||||||| |
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| T |
28443666 |
ccactgccagcaataagtgactcacca------acaattacaccttgatccaatgattctaagctgcata |
28443603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 154
Target Start/End: Complemental strand, 28436534 - 28436396
Alignment:
| Q |
16 |
tttgtatcttgtcataccaaatagctagcatgaaaagtgcattaggaagttggtaaaacccaaatgcaaaatctcttgaaggagagagccatcgggttgt |
115 |
Q |
| |
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||||||| ||| ||||||| |||||||||| |||||| ||| |||||||||||||| |||||||| ||||||| |||||||||||||| || ||||| |
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| T |
28436534 |
tttgtattttgacataccatatagctagcaagaaaagctgatttggaagttggtaaaatccaaatgcgaaatctcccgaaggagagagccaacgagttgt |
28436435 |
T |
|
| Q |
116 |
cccattgccagctgtaagtgactcaccaacactcacact |
154 |
Q |
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|||||| ||||| || ||||| ||||| | ||||||||| |
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| T |
28436434 |
cccatttccagcagtgagtgagtcacctagactcacact |
28436396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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