View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1642_low_8 (Length: 242)

Name: NF1642_low_8
Description: NF1642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1642_low_8
NF1642_low_8
[»] chr3 (2 HSPs)
chr3 (16-235)||(5031138-5031357)
chr3 (162-215)||(53922790-53922843)
[»] chr1 (1 HSPs)
chr1 (34-235)||(7988795-7988991)
[»] chr2 (1 HSPs)
chr2 (158-233)||(288954-289029)
[»] chr4 (4 HSPs)
chr4 (158-198)||(29531135-29531175)
chr4 (158-208)||(35386103-35386153)
chr4 (158-215)||(28090199-28090256)
chr4 (172-232)||(29193087-29193147)
[»] scaffold0227 (1 HSPs)
scaffold0227 (158-208)||(9688-9738)
[»] chr8 (1 HSPs)
chr8 (162-210)||(35439180-35439228)
[»] chr6 (1 HSPs)
chr6 (161-213)||(29144063-29144115)
[»] chr5 (1 HSPs)
chr5 (156-208)||(8937114-8937166)


Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 5031138 - 5031357
Alignment:
Q  16 caattttgatatttgatcattatggatggagataacttacccttaatcaattttcgagtgagatgtttccatccatggttattgaatagagtggttaacg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5031138 caattttgatatttgatcattatggatggagataacttacccttaatcaattttcgagtgagatgtttccatccatggttattgaatagagtggttaacg 5031237  T
Q  116 gcgagatatttcaagcactcaacatttgaaagagattttatatttctctctcttctattaaaaatgattttattcaaaagctaaacaaaatagatatttc 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5031238 gcgagatatttcaagcactcaacatttgaaagagattttatatttctctctcttcttttaaaaatgattttattcaaaagctaaacaaaatagatatttc 5031337  T
Q  216 gtttgcaatgtaaaaattgg 235  Q
     ||||||| |||||||||||    
T  5031338 atttgcaacgtaaaaattgg 5031357  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 53922843 - 53922790
Alignment:
Q  162 tctctcttctattaaaaatgattttattcaaaagctaaacaaaatagatatttc 215  Q
    ||||||||||||||||||||||||| ||| || ||| | |||||||| ||||||    
T  53922843 tctctcttctattaaaaatgattttcttctaaggctgatcaaaatagttatttc 53922790  T

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Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 34 - 235
Target Start/End: Original strand, 7988795 - 7988991
Alignment:
Q  34 attatggatggagataacttacccttaatcaattttcgagtgagatgtttccatccatggttattgaatagagtggttaacggcgagatatttcaagcac 133  Q
    |||||||||||||||| ||||||||||||||||||| |||||| |||| ||||| ||| |||||||||| |||||| || |||  |||||     |||||    
T  7988795 attatggatggagatatcttacccttaatcaatttttgagtgaaatgtctccattcatagttattgaattgagtgggtagcggtaagata-----agcac 7988889  T
Q  134 tcaacatttgaaagagattttatatttctctctcttctattaaaaatgattttattcaaaagctaaacaaaatagatatttcgtttgcaatgtaaaaatt 233  Q
     |||||| ||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||  ||||||||    
T  7988890 acaacatctgaaagagattttgtatttctctttcttctattaaaagtgattttattcaaaagctaaacaaaataaatatttcgtttgcaacataaaaatt 7988989  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 158 - 233
Target Start/End: Complemental strand, 289029 - 288954
Alignment:
Q  158 tttctctctcttctattaaaaatgattttattcaaaagctaaacaaaatagatatttcgtttgcaatgtaaaaatt 233  Q
    ||||||||||||||||||||||||| ||| ||||||||||||  ||||||| |||||| ||| |||  ||||||||    
T  289029 tttctctctcttctattaaaaatgaatttcttcaaaagctaatgaaaatagctatttcattttcaacataaaaatt 288954  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 29531175 - 29531135
Alignment:
Q  158 tttctctctcttctattaaaaatgattttattcaaaagcta 198  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  29531175 tttctctctcttctattaaaaatgattttcttcaaaagcta 29531135  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 158 - 208
Target Start/End: Original strand, 35386103 - 35386153
Alignment:
Q  158 tttctctctcttctattaaaaatgattttattcaaaagctaaacaaaatag 208  Q
    |||| |||||||||||||||||||||||| ||||||| |||| ||||||||    
T  35386103 tttccctctcttctattaaaaatgattttcttcaaaatctaatcaaaatag 35386153  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 215
Target Start/End: Complemental strand, 28090256 - 28090199
Alignment:
Q  158 tttctctctcttctattaaaaatgattttattcaaaagctaaacaaaatagatatttc 215  Q
    |||| |||||||||||||||||| ||||| ||||||| | || |||||||| ||||||    
T  28090256 tttcactctcttctattaaaaatcattttcttcaaaatcaaatcaaaatagttatttc 28090199  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 29193087 - 29193147
Alignment:
Q  172 attaaaaatgattttattcaaaagctaaacaaaatagatatttcgtttgcaatgtaaaaat 232  Q
    ||||||||||||||| |||||||||||| |||||||   || || ||| ||||||||||||    
T  29193087 attaaaaatgattttcttcaaaagctaatcaaaataataatatcattttcaatgtaaaaat 29193147  T

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Target: scaffold0227 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 208
Target Start/End: Original strand, 9688 - 9738
Alignment:
Q  158 tttctctctcttctattaaaaatgattttattcaaaagctaaacaaaatag 208  Q
    |||| ||||||||| |||||||||||||| ||||||| |||| ||||||||    
T  9688 tttccctctcttctgttaaaaatgattttcttcaaaatctaatcaaaatag 9738  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 35439228 - 35439180
Alignment:
Q  162 tctctcttctattaaaaatgattttattcaaaagctaaacaaaatagat 210  Q
    ||||||||||||||||| | ||||| |||||||| ||| ||||||||||    
T  35439228 tctctcttctattaaaactaattttcttcaaaagttaatcaaaatagat 35439180  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 213
Target Start/End: Complemental strand, 29144115 - 29144063
Alignment:
Q  161 ctctctcttctattaaaaatgattttattcaaaagctaaacaaaatagatatt 213  Q
    |||||||||||||||||||||||||| || ||||  ||| |||||||| ||||    
T  29144115 ctctctcttctattaaaaatgattttctttaaaaaataatcaaaatagctatt 29144063  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 8937166 - 8937114
Alignment:
Q  156 tatttctctctcttctattaaaaatgattttattcaaaagctaaacaaaatag 208  Q
    ||||||| ||||||||||||||||||||||| ||| |||| |||  |||||||    
T  8937166 tatttctatctcttctattaaaaatgattttcttcgaaagttaatgaaaatag 8937114  T

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