View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643-INSERTION-1 (Length: 365)
Name: NF1643-INSERTION-1
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643-INSERTION-1 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 8 - 365
Target Start/End: Original strand, 35171409 - 35171766
Alignment:
| Q |
8 |
ataacatcaacattatcatcaatagcttgatccattcctgcaagaacatcagaagctagacgaccttcgtcccaaagtactttatacattgcaattctag |
107 |
Q |
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| T |
35171409 |
ataacatcaacattatcatcaatagcttgatccattcctgcaagaacatcagaagctagacgaccttcgtcccaaagtactttatacattgcaattctag |
35171508 |
T |
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| Q |
108 |
cttttggtgcaatacctctagctacaccttttgcataaccaaagaaagaagcatctttgacatagtttccggctgccgttgatgatgtgtgactaccatg |
207 |
Q |
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| T |
35171509 |
cttttggtgcaatacctctagctacaccttttgcataaccaaagaaagatgcatctttgacatagtttccggctgccgttgatgatgtgtgactaccatg |
35171608 |
T |
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| Q |
208 |
tccttgtgtgtctctagctgagttcatactgattttgacatttggttttgatgcaatcacacctttgttgaaatatctagctccaattaatttcaagtta |
307 |
Q |
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| T |
35171609 |
tccttgtgtgtctctagctgagttcatactgattttgacatttggttttgatgcaatcacacctttgttgaaatatctagctccaattaatttcaagtta |
35171708 |
T |
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| Q |
308 |
cacatagaagtgttgaaatcttgtcctgcttgacattttcctttccattttgttggga |
365 |
Q |
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| T |
35171709 |
cacatagaagtgttgaaatcttgtcctgcttgacattttcctttccattttgttggga |
35171766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 185 - 357
Target Start/End: Complemental strand, 30098909 - 30098737
Alignment:
| Q |
185 |
gttgatgatgtgtgactaccatgtccttgtgtgtctctagctgagttcatactgattttgacatttggttttgatgcaatcacacctttgttgaaatatc |
284 |
Q |
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| T |
30098909 |
gttgatgatgtgtgagttccatgccctatagtgtctctagctgagttcatgctgattgtaacatttggatttgaagcaatcacacctttgttgaaatatc |
30098810 |
T |
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| Q |
285 |
tagctccaattaatttcaagttacacatagaagtgttgaaatcttgtcctgcttgacattttcctttccattt |
357 |
Q |
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| T |
30098809 |
tagctccaatcaatttgaagttacacattgaggtattgaattcttggccagtttcacatgttcctttccattt |
30098737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 216 - 312
Target Start/End: Original strand, 30091988 - 30092084
Alignment:
| Q |
216 |
tgtctctagctgagttcatactgattttgacatttggttttgatgcaatcacacctttgttgaaatatctagctccaattaatttcaagttacacat |
312 |
Q |
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| T |
30091988 |
tgtctctagctgagttcatcctgattctaacatttggatttgaagcaatcacacctttgttgaaagatctagctccaatcagtttgaagttgcacat |
30092084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 174
Target Start/End: Original strand, 30091692 - 30091855
Alignment:
| Q |
11 |
acatcaacattatcatcaatagcttgatccattcctgcaagaacatcagaagctagacgaccttcgtcccaaagtactttatacattgcaattctagctt |
110 |
Q |
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| T |
30091692 |
acatcaacaccatcagcaatagcttggtccattccagctaaaacatcagaagccaaaagaccctcttcccaaatgactttgtacatagcaagcctagctc |
30091791 |
T |
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| Q |
111 |
ttggtgcaatacctctagctacaccttttgcataaccaaagaaagaagcatctttgacatagtt |
174 |
Q |
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| T |
30091792 |
ttggtgcaatgcctcttgctactcctttagcataaccaaaataagaagttccattgacatagtt |
30091855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 28 - 159
Target Start/End: Complemental strand, 30099204 - 30099073
Alignment:
| Q |
28 |
aatagcttgatccattcctgcaagaacatcagaagctagacgaccttcgtcccaaagtactttatacattgcaattctagcttttggtgcaatacctcta |
127 |
Q |
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| T |
30099204 |
aatagcttggtccatgccagctaaaacatcagaggcgaaacgaccctcttcccaaatgactttgtacatagcaatcctagcttttggtgcaatgcctctt |
30099105 |
T |
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| Q |
128 |
gctacaccttttgcataaccaaagaaagaagc |
159 |
Q |
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| T |
30099104 |
gctattcctttggcataaccaaaataagaagc |
30099073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 174
Target Start/End: Original strand, 30087733 - 30087875
Alignment:
| Q |
32 |
gcttgatccattcctgcaagaacatcagaagctagacgaccttcgtcccaaagtactttatacattgcaattctagcttttggtgcaatacctctagcta |
131 |
Q |
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| T |
30087733 |
gcttggtccattccagctaaaacatcagaagccataacatcctcttcccaaatgactttgtacatagcaatcttagcttttggtgcaatgcctcttgcta |
30087832 |
T |
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| Q |
132 |
caccttttgcataaccaaagaaagaagcatctttgacatagtt |
174 |
Q |
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| T |
30087833 |
ctcctttagcatagccaaaataagaagctccgttgacatagtt |
30087875 |
T |
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