View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643-INSERTION-10 (Length: 550)
Name: NF1643-INSERTION-10
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643-INSERTION-10 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 525; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 8 - 550
Target Start/End: Original strand, 8419405 - 8419947
Alignment:
| Q |
8 |
ctcatttcttggatacacattgcacatggctaatccacacattattcgagataggataaatgatgtcaatatcaagccattttatgatttactttttcac |
107 |
Q |
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| T |
8419405 |
ctcatttcttggatacacattgcacatggctaatccacacattattcgagataggataaatgatgtcaatatcaagccattttatgatttactttttcac |
8419504 |
T |
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| Q |
108 |
tacttccttcatgacatgattcagtattctctagctttcaatggtgttcttggcattctcctcaagtgaaattttgtgcatgcatactatggggataata |
207 |
Q |
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| T |
8419505 |
tacttccttcatgacatgattcagtattctctagctttcaatggtgttcttggcattctcctcaagtgaaattttgtgcatgcaaactatggggataata |
8419604 |
T |
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| Q |
208 |
cccttgatatctgaaatttgccaacccatgacctttttgtgtttcttcaaaacatataatagcaactcctccctgagtatcgtcaagcaaagatgataaa |
307 |
Q |
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| T |
8419605 |
cccttgatatctgaaatttgccaacccatgacctttttgtgtttcttcaaaacatataatagcaactcctccctgagtatcgtcaagcaaagatgataaa |
8419704 |
T |
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| Q |
308 |
ataacatgaagtgtttcattctcacccaagtaagcatactttaaggtgggaggaagttgtttcagctctaaaagwggcggtgcttcaattgatggtgggt |
407 |
Q |
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| T |
8419705 |
ataacaggaagtgtttcattctcacccaagtaagcatactttaaggtgggaggaagttgtttcagctctaaaagtggcggtgcttcaattgatggtgggt |
8419804 |
T |
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| Q |
408 |
tgttcttgatgctatcacttttcaactctaatgattcatactcttcttcaaccaaagatttggttgttcttgttttggctcactcacaacaattgatcca |
507 |
Q |
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| T |
8419805 |
tgttcttgatgctatcacttttcaactataatgattcatacttttcttcaaccaaagatttggttgttcttgttttggctcactcacaacaattgatcca |
8419904 |
T |
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| Q |
508 |
tttcctcaaagtgtttcagctcatgtaaatcatcttggtcttt |
550 |
Q |
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| T |
8419905 |
tttcctcaaagtgtttcagctcatgtaaatcatcttggtcttt |
8419947 |
T |
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