View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643-INSERTION-11 (Length: 357)
Name: NF1643-INSERTION-11
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643-INSERTION-11 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 6e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 8 - 200
Target Start/End: Original strand, 24860643 - 24860836
Alignment:
| Q |
8 |
agttaccattatgcccaaggatattcaactcgctcgcagaatcagaggcgagagggcttaagcacaggcttagggttattaatgtaatttacttgaaatt |
107 |
Q |
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| T |
24860643 |
agttaccattatgcccaaggatattcaactcgctcgcagaatcagaggcgagagggcttaagcataggcttagggttattaatgtaatttacttgaaatt |
24860742 |
T |
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| Q |
108 |
ttgaagatttagcgtttcgttttctaatgtaatcg--tatcggtgatgtaatgtttattattatcggaatgaaatgaaatgaaattactggtttc |
200 |
Q |
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| T |
24860743 |
tcgaagatttagcgtttcgttttctaatgtaatcgtatatcggtgatgtaatg-ttattattatcggaatgaaatgaaatgaaattactggtttc |
24860836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 292 - 357
Target Start/End: Original strand, 24860928 - 24860995
Alignment:
| Q |
292 |
ggtgatattgggctgggcttaagtgtggcccac--aactttattggggcccatttaattggcgggaat |
357 |
Q |
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| T |
24860928 |
ggtgatattgggctgggcttaagtgtggcccacaaaactttattggggcccatttaattggcgggaat |
24860995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 12531590 - 12531648
Alignment:
| Q |
9 |
gttaccattatgcccaaggatattcaactcgctcgcagaatcagaggcgagagggctta |
67 |
Q |
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||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12531590 |
gttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggctta |
12531648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 9894754 - 9894798
Alignment:
| Q |
23 |
caaggatattcaactcgctcgcagaatcagaggcgagagggctta |
67 |
Q |
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|||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
9894754 |
caaggatattgaacttgctcgcagaatcagaggcgagagggctta |
9894798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 12547029 - 12546971
Alignment:
| Q |
9 |
gttaccattatgcccaaggatattcaactcgctcgcagaatcagaggcgagagggctta |
67 |
Q |
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||||| || ||||| |||||||||||||| ||||||||||| ||||||||||| ||||| |
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| T |
12547029 |
gttactatcatgcctaaggatattcaacttgctcgcagaattagaggcgagagagctta |
12546971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 3929992 - 3929933
Alignment:
| Q |
8 |
agttaccattatgcccaaggatattcaactcgctcgcagaatcagaggcgagagggctta |
67 |
Q |
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|||||| |||||||| |||||||||||||| || | |||||||||||||| |||||||| |
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| T |
3929992 |
agttactattatgccgaaggatattcaacttgcaagaagaatcagaggcgaaagggctta |
3929933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 21320196 - 21320240
Alignment:
| Q |
24 |
aaggatattcaactcgctcgcagaatcagaggcgagagggcttaa |
68 |
Q |
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|||||||||||||| ||| ||| ||||||||| |||||||||||| |
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| T |
21320196 |
aaggatattcaacttgcttgcataatcagaggtgagagggcttaa |
21320240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 43479704 - 43479646
Alignment:
| Q |
9 |
gttaccattatgcccaaggatattcaactcgctcgcagaatcagaggcgagagggctta |
67 |
Q |
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||||| |||||||| |||||||||||||| || | ||||| ||||||||||||||||| |
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| T |
43479704 |
gttacaattatgcctaaggatattcaacttgcaagaagaattagaggcgagagggctta |
43479646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 13576446 - 13576504
Alignment:
| Q |
9 |
gttaccattatgcccaaggatattcaactcgctcgcagaatcagaggcgagagggctta |
67 |
Q |
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||||| |||||||| |||||||||||||| || | |||||||||||||| |||||||| |
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| T |
13576446 |
gttactattatgcctaaggatattcaacttgcgagaagaatcagaggcgaaagggctta |
13576504 |
T |
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