View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643-INSERTION-12 (Length: 477)
Name: NF1643-INSERTION-12
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643-INSERTION-12 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 12 - 477
Target Start/End: Complemental strand, 43527041 - 43526588
Alignment:
| Q |
12 |
agccacacttcattcctacaacatgaagtaattaagacaatagatggagtctcgaagcatatttttaaaaacctgatcagccggtcgaaccagtccaatc |
111 |
Q |
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| T |
43527041 |
agccacacttcattcctacaacatgaagtaattaagacaatagatggagtcttgaagcatatttttaaaaaccggatcagcc---------agtccaatc |
43526951 |
T |
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| Q |
112 |
ggaaaccggatggttaaccggttccatttagtgatcagatcggttatgttatcaacccgttatggaccagtttaatccggcaagatccggattaaatcgg |
211 |
Q |
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| T |
43526950 |
gggaaccggatggttaaccggttccatttagtgatcagatcggttatgttatcaacccgttatggaccagtttaatccggcaagatccggattaaatcgg |
43526851 |
T |
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| Q |
212 |
cgaaccggatgttatattaaaccggccgggtcaacttattgacccnnnnnnnnctttcttttctctcgcaagagacaacaatt-tctgtcacaattnnnn |
310 |
Q |
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|||||||||||||||||||||||||||| ||| ||||||||||| ||||||| ||||||||||||||||||| | ||||||| |||| |
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| T |
43526850 |
cgaaccggatgttatattaaaccggccgactcatcttattgaccctttttt---tttcttt-ctctcgcaagagacaacaagtgtctgtcataattaaaa |
43526755 |
T |
|
| Q |
311 |
nnnnnnnntttaacctagctgcttgaagagagatttgaacaggcaacctcggccgaataaatgtgaagagagatttgtgttacttttgtactacttctga |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43526754 |
aaatata-tttaacctagctgcttgaagagagatttgaacaggcaacctcggccgaataaatgtgaagagagatttgtgttacttttgtactacttctga |
43526656 |
T |
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| Q |
411 |
tagaaag-aaattcaattgcaaaagatagctgtcatagtttattgtctatctaccttttataatttta |
477 |
Q |
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| T |
43526655 |
tagaaagaaaattcaattgcaaaagataactgtcatagtttattgtctatctaccttttataatttta |
43526588 |
T |
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