View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643-INSERTION-13 (Length: 610)
Name: NF1643-INSERTION-13
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643-INSERTION-13 |
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Alignment Details
Target: chr7 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 7 - 443
Target Start/End: Complemental strand, 39928216 - 39927773
Alignment:
| Q |
7 |
actatcgatgttggatgaatcaatgagcacatggagcaatttttgttcataataaagataaggtttctgaaagaaacgtctacgcttgcttttgcagaag |
106 |
Q |
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| T |
39928216 |
actatcgatgttggatgaatcaatgagcacatggagcaatttttgttcataataaagagaaggtttctgaaagaaacgtctacgcttgcttttgcagaag |
39928117 |
T |
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| Q |
107 |
ttcaataataaaggcatatactcacggtgaagtccgcctaccggtatccgatgaatttcctcatcgataatcatgtcttcctacctggga------tcgg |
200 |
Q |
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| T |
39928116 |
ttcaataataaaggcatatactcacggtgaagtccgcctaccggtatccgatgaatttcctcatcgataatcatgtcttcctacctgggaatgggatcgg |
39928017 |
T |
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| Q |
201 |
ttgcaaaacaaagggttccatgtcaggttaattgtcccagttgtgaagcaaattttgaaaatgagtggcatttaatctttggatacgcaagacaaaacaa |
300 |
Q |
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| T |
39928016 |
ttgcaaaacaaagggttccatgtcaggataattgtccccgttgtgaagcaaattttgaaaatgagtggcatttaatctttggatacgcaagacaaaacaa |
39927917 |
T |
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| Q |
301 |
gtttgtttgtttgaaaactgattttttgtggcaaacaatacaatggtaaataatgtagatggttttgtcaaattattctttcaagtccgaaaagaattat |
400 |
Q |
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| T |
39927916 |
gtttgtttgtttgaaaagtgattttttgtggcaaacaatacaatggtaaataatgtagatggttttgtcaaattattctttcaagcccgaaaaaaattat |
39927817 |
T |
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| Q |
401 |
agatgatgctaatttgtgtc-tttaagggcacaagttaangagc |
443 |
Q |
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| T |
39927816 |
gggtgatactaatttgtgtcttttaagggcacaagttaaggagc |
39927773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 525 - 610
Target Start/End: Complemental strand, 39927691 - 39927610
Alignment:
| Q |
525 |
aaaaaacttctacaattaatatttggcttataattctttctaggatacaagttagcatatctcaaaaattattcttccatggtttt |
610 |
Q |
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| T |
39927691 |
aaaaaacttctacaattaatatttggcttatg----tttcaaggacacaagttagcatttctcaaaaattattcttcgatggtttt |
39927610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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