View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643-INSERTION-2 (Length: 447)
Name: NF1643-INSERTION-2
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643-INSERTION-2 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 8 - 447
Target Start/End: Original strand, 21019087 - 21019523
Alignment:
| Q |
8 |
attgtgttcaataatggtgttgtcgacttagatgatttggtggaaaatattaaagttctatcgtgatattggagtttgagtaagttaaaaatcacgtcat |
107 |
Q |
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| T |
21019087 |
attgtgttcaata-tggtgttgtcgacttagatgatttggtggaaaatattaaagttctatcatggtattggagtttgagtaagttaaaaatcacgtca- |
21019184 |
T |
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| Q |
108 |
gtcatgtctttactatgagtggtgttcgaatcctcgggaatgtttgattaggtaacagtcggttttggtggagtttagtggcagggggagcttttggcag |
207 |
Q |
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| T |
21019185 |
----tgtctttactatgagtggtgttggaatcctcgggaatgtttgattaggtaacagtcggttttggtggagttttgtggcagggggagcttttggcag |
21019280 |
T |
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| Q |
208 |
gcagcagcacctgttgtgtggtctggcacggctgctgtgctgctgttaactgtttttggtggctggcagtatggttttgttgctgcagattgtcctggtg |
307 |
Q |
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| T |
21019281 |
gcagcagcacctgttgtgtggtctggcacggctgctgtgctgctgttatctgtttttggtggctggcagtatggttttgttgctgcagattgtgctggtg |
21019380 |
T |
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| Q |
308 |
cggtgctgttctgttagtttggagctttgccttgtaactgctttgtagnnnnnnnnngggttgggtgtgtagtgtaagggttgccctgtactactgata- |
406 |
Q |
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| T |
21019381 |
cggtgctgttctgttagtttggagctttgccttgtaactgctttgtagtttttttttgggttgggtgtgtagtgtaagggttgccctgtactactgatac |
21019480 |
T |
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| Q |
407 |
--ggggccttggctgtttgttcttttcgttttcggctccattc |
447 |
Q |
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| T |
21019481 |
gtggggccttggctgtttgttcttttcgttttcggctccattc |
21019523 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 156
Target Start/End: Complemental strand, 34468733 - 34468695
Alignment:
| Q |
118 |
tactatgagtggtgttcgaatcctcgggaatgtttgatt |
156 |
Q |
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| T |
34468733 |
tactatgagtggtgttggaaccctcgggaatgtttgatt |
34468695 |
T |
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