View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1643-INSERTION-3 (Length: 163)
Name: NF1643-INSERTION-3
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643-INSERTION-3 |
 | |
|
| [»] scaffold0001 (1 HSPs) |
| |
|
Alignment Details
Target: scaffold0001 (Bit Score: 145; Significance: 1e-76; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 145; E-Value: 1e-76
Query Start/End: Original strand, 7 - 163
Target Start/End: Complemental strand, 143215 - 143059
Alignment:
| Q |
7 |
acttagttgacatcattccaaattttcgggttcctattcttccaaatactccataacataacgctaaacaatggaatctaataactgctaatattttgca |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
143215 |
acttagttgacatcattccaaattttcgggttcctatttttccaaatactccataacataacgctaaacaatggaatctaataactgctaatattttgca |
143116 |
T |
|
| Q |
107 |
tcaaggcaaatagattttgtggggtgctcttgtttggatgcaaagcctctataatat |
163 |
Q |
| |
|
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
143115 |
tcacggcaaatagattttgtgaggtgctcttgtttggatgcaaagcctctataatat |
143059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University