View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643-INSERTION-6 (Length: 270)
Name: NF1643-INSERTION-6
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643-INSERTION-6 |
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Alignment Details
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 153
Target Start/End: Complemental strand, 4704215 - 4704074
Alignment:
| Q |
12 |
catcacttattaattcaaaagcttcattattcaatatatactcttccacttatataaaaaacttgtttgtttagagcataagtaggtgaatatggttagt |
111 |
Q |
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| T |
4704215 |
catcaattcttaattaaaaggcttcatggttcaacatatacttttacacttatgttataaacttgtttatttagtgcatgagtaggtgaagagagatggt |
4704116 |
T |
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| Q |
112 |
atctgtgagtttcaaaagattttgttcactttccctccaatt |
153 |
Q |
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| T |
4704115 |
atctgtgagtttgaaaagattgtgttccctttccctcaaatt |
4704074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 269
Target Start/End: Complemental strand, 4703098 - 4703060
Alignment:
| Q |
231 |
agtaggagacaagttagctatactgtgctgaaatgttca |
269 |
Q |
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| T |
4703098 |
agtaggagagaagttagctatactgtgctgaaatgttca |
4703060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 23255498 - 23255534
Alignment:
| Q |
10 |
cacatcacttattaattcaaaagcttcattattcaat |
46 |
Q |
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| T |
23255498 |
cacatcacttcttaattcaaaagcttcattaatcaat |
23255534 |
T |
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