View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1643-INSERTION-7 (Length: 520)
Name: NF1643-INSERTION-7
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643-INSERTION-7 |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 10 - 459
Target Start/End: Complemental strand, 14696456 - 14696008
Alignment:
| Q |
10 |
ggggagagatgtgttaggagtaattgaacgaaatgcggaattggccttgttttggtttgggcctatgtaaatgagccttaatctactgctcggtcaagaa |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
14696456 |
ggggagagatgtgttaggagtaattgaacgaaatgcggaattggccttgttttggtttgggcctatgtaaatgagccttaatctactgctcggtccagaa |
14696357 |
T |
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| Q |
110 |
caaattccatctcaaattaggagacacttaggtgtcatgaagtttatagagtcatacattacttcaatttcaagcaatgacatggtgagggtgatttgtt |
209 |
Q |
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| T |
14696356 |
caaattccatctcaaattaggagacacttaggtgtcatgaagtttatagagtcatacattacttcaatttcaagcaatgacatggtgagggtgatttgtt |
14696257 |
T |
|
| Q |
210 |
acgacatgttggatgatacacctagttagacgagagattttgtgagaaagaagagttacacttgtttacgtttagttaattccctttcctaattttatag |
309 |
Q |
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| T |
14696256 |
accacatgttggatgatacacctagttagacgagagattttttgagaaagaagagttacacttgattacatttagttaattccctttcctaattttatag |
14696157 |
T |
|
| Q |
310 |
tttggtttatttcctttcttaaatttaagattccgttattttcttttccttagattaatgcaagttgttgtgccaatagtaatgatatatgttgtaaggg |
409 |
Q |
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|||||||||||| ||||| |||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||| |||||||| |
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| T |
14696156 |
tttggtttattttctttcctaaatttaagattctgttattttcttttctttagatt-atgcaagttgttgtgccaagagtaatgatatatgatgtaaggg |
14696058 |
T |
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| Q |
410 |
gaaccaattctgatatgtcgaataataacaagttttcactttcttccttc |
459 |
Q |
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| T |
14696057 |
gaaccaattctgatatgtcgaataataacaagttttcactttcttccttc |
14696008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 478 - 520
Target Start/End: Complemental strand, 14695991 - 14695949
Alignment:
| Q |
478 |
caaggtttcactttcttccctaatttctcatctattttctcta |
520 |
Q |
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| T |
14695991 |
caaggtttcactttcttccctaatttctcatctatttcctcta |
14695949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 269 - 458
Target Start/End: Complemental strand, 27758413 - 27758224
Alignment:
| Q |
269 |
acttgtttacgtttagttaattccctttcctaattttatagtttggtttatttcctttcttaaatttaagattccgttattttcttttccttagattaat |
368 |
Q |
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| T |
27758413 |
acttgattacattaagttatttcctttttctaattttatggtttagtttatttccttttctaaatttatgattatgttatttcccttttcttagatt-at |
27758315 |
T |
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| Q |
369 |
gcaagttgttgtgccaatagtaatgatatatgttgtaa-ggggaaccaattctgatatgtcgaataataacaagttttcactttcttcctt |
458 |
Q |
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| T |
27758314 |
gcaagttgttatgctaagattgactatatatgatgtaatagtgaaccaattcagatatgttgaataataataaggtttcactttcttcctt |
27758224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 479 - 519
Target Start/End: Complemental strand, 27758243 - 27758203
Alignment:
| Q |
479 |
aaggtttcactttcttccctaatttctcatctattttctct |
519 |
Q |
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| T |
27758243 |
aaggtttcactttcttccttaatttgtcatctattttctct |
27758203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 478 - 519
Target Start/End: Original strand, 35401035 - 35401076
Alignment:
| Q |
478 |
caaggtttcactttcttccctaatttctcatctattttctct |
519 |
Q |
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| T |
35401035 |
caaggtttcactttcttccataatttctcatctattttctct |
35401076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0189 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 483 - 519
Target Start/End: Original strand, 10561 - 10597
Alignment:
| Q |
483 |
tttcactttcttccctaatttctcatctattttctct |
519 |
Q |
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| T |
10561 |
tttcactttctcccctaatttctcatctattttctct |
10597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 284 - 362
Target Start/End: Complemental strand, 28984103 - 28984025
Alignment:
| Q |
284 |
gttaattccctttcctaattttatagtttggtttatttcctttcttaaatttaagattccgttattttcttttccttag |
362 |
Q |
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| T |
28984103 |
gttatttccctttactaattttacggttcagtttatttcctttcctagatttatgattatgttattttcctttccttag |
28984025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 482 - 515
Target Start/End: Complemental strand, 28983228 - 28983195
Alignment:
| Q |
482 |
gtttcactttcttccctaatttctcatctatttt |
515 |
Q |
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| T |
28983228 |
gtttcactttctcccctaatttctcatctatttt |
28983195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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