View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1643-INSERTION-8 (Length: 529)

Name: NF1643-INSERTION-8
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1643-INSERTION-8
NF1643-INSERTION-8
[»] chr6 (16 HSPs)
chr6 (8-345)||(6014313-6014650)
chr6 (384-529)||(6014776-6014921)
chr6 (8-78)||(6007357-6007427)
chr6 (340-384)||(6014693-6014737)
chr6 (164-247)||(10452413-10452496)
chr6 (109-212)||(9027458-9027559)
chr6 (129-212)||(21959629-21959710)
chr6 (176-253)||(1402942-1403019)
chr6 (167-311)||(9667974-9668118)
chr6 (227-310)||(20368170-20368253)
chr6 (166-248)||(29274281-29274363)
chr6 (169-310)||(33500470-33500612)
chr6 (243-304)||(30784570-30784630)
chr6 (164-212)||(2514636-2514684)
chr6 (164-212)||(4248892-4248940)
chr6 (169-273)||(33787772-33787876)
[»] scaffold0590 (1 HSPs)
scaffold0590 (125-225)||(1149-1247)
[»] scaffold0275 (1 HSPs)
scaffold0275 (125-225)||(2728-2826)
[»] chr4 (16 HSPs)
chr4 (165-310)||(2996508-2996653)
chr4 (158-310)||(23819018-23819169)
chr4 (230-291)||(55414429-55414490)
chr4 (132-247)||(24193489-24193602)
chr4 (164-212)||(27671920-27671968)
chr4 (190-274)||(52735082-52735166)
chr4 (168-247)||(45128363-45128442)
chr4 (190-248)||(8130134-8130192)
chr4 (164-218)||(47970252-47970306)
chr4 (230-307)||(19250546-19250623)
chr4 (164-209)||(41088318-41088363)
chr4 (230-291)||(54069426-54069487)
chr4 (266-310)||(1965977-1966021)
chr4 (222-274)||(18628569-18628621)
chr4 (168-248)||(24443976-24444056)
chr4 (164-212)||(51044547-51044595)
[»] chr5 (18 HSPs)
chr5 (158-316)||(32172581-32172739)
chr5 (109-211)||(29115302-29115402)
chr5 (165-212)||(39128574-39128621)
chr5 (158-212)||(7096215-7096269)
chr5 (233-310)||(37611205-37611282)
chr5 (233-310)||(37787935-37788012)
chr5 (164-311)||(9202736-9202884)
chr5 (166-230)||(37063144-37063208)
chr5 (233-316)||(11457102-11457184)
chr5 (168-311)||(18704025-18704167)
chr5 (164-214)||(20982221-20982271)
chr5 (164-234)||(35135728-35135798)
chr5 (237-310)||(13604839-13604912)
chr5 (237-310)||(21768187-21768260)
chr5 (264-316)||(11700362-11700414)
chr5 (190-274)||(26516360-26516444)
chr5 (192-252)||(36539708-36539768)
chr5 (190-234)||(39750103-39750147)
[»] chr3 (12 HSPs)
chr3 (231-316)||(37273135-37273220)
chr3 (221-321)||(24603731-24603831)
chr3 (164-225)||(27792806-27792867)
chr3 (165-225)||(2321110-2321169)
chr3 (164-247)||(1395605-1395688)
chr3 (224-291)||(25776111-25776178)
chr3 (230-291)||(4526377-4526438)
chr3 (203-316)||(41452496-41452609)
chr3 (164-212)||(20192694-20192742)
chr3 (168-212)||(40122840-40122884)
chr3 (164-212)||(41028939-41028987)
chr3 (164-224)||(53457311-53457371)
[»] chr8 (6 HSPs)
chr8 (130-260)||(787146-787274)
chr8 (190-307)||(31862453-31862570)
chr8 (107-274)||(4558677-4558842)
chr8 (164-212)||(14482136-14482184)
chr8 (167-207)||(31916552-31916592)
chr8 (168-248)||(35869775-35869855)
[»] chr2 (17 HSPs)
chr2 (243-316)||(34652020-34652093)
chr2 (190-309)||(1939323-1939442)
chr2 (190-260)||(6988075-6988145)
chr2 (125-221)||(31461335-31461429)
chr2 (193-274)||(36863651-36863732)
chr2 (189-307)||(35485876-35485994)
chr2 (188-274)||(11513856-11513942)
chr2 (164-210)||(12215741-12215787)
chr2 (167-225)||(17952776-17952834)
chr2 (164-274)||(18962064-18962174)
chr2 (164-310)||(28933758-28933903)
chr2 (230-316)||(32821809-32821895)
chr2 (164-241)||(25609730-25609807)
chr2 (233-310)||(43456697-43456774)
chr2 (264-316)||(1742016-1742068)
chr2 (166-310)||(5133708-5133852)
chr2 (258-306)||(10285888-10285936)
[»] chr1 (21 HSPs)
chr1 (192-317)||(16322811-16322936)
chr1 (167-291)||(52286615-52286739)
chr1 (104-212)||(43029489-43029594)
chr1 (164-209)||(29793716-29793761)
chr1 (169-241)||(36151564-36151636)
chr1 (168-247)||(39348020-39348099)
chr1 (224-290)||(22810638-22810704)
chr1 (236-310)||(35925696-35925770)
chr1 (164-210)||(38651499-38651545)
chr1 (158-212)||(42550169-42550223)
chr1 (170-316)||(43420198-43420344)
chr1 (168-209)||(172668-172709)
chr1 (168-311)||(26184689-26184829)
chr1 (230-291)||(26779934-26779995)
chr1 (164-301)||(44031998-44032135)
chr1 (166-274)||(5150873-5150981)
chr1 (238-310)||(5591956-5592028)
chr1 (169-225)||(23895275-23895331)
chr1 (232-316)||(38867815-38867899)
chr1 (164-212)||(45999376-45999424)
chr1 (168-212)||(50319230-50319274)
[»] chr7 (8 HSPs)
chr7 (170-248)||(5006561-5006639)
chr7 (188-274)||(29363476-29363562)
chr7 (237-310)||(12110367-12110440)
chr7 (168-316)||(4966094-4966242)
chr7 (164-212)||(5276158-5276206)
chr7 (164-316)||(30133983-30134135)
chr7 (164-234)||(31002695-31002765)
chr7 (164-201)||(3610839-3610876)


Alignment Details
Target: chr6 (Bit Score: 310; Significance: 1e-174; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 8 - 345
Target Start/End: Original strand, 6014313 - 6014650
Alignment:
Q  8 ggtcttccaacatcatgatcaagaattcggcaatgcgcaagcatatttgaaatttttgtaacatactgaattatgtttcatttcctaatgagtttaggcc 107  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6014313 ggtcttccaacatcatgagcaagaattcagcaatgcgcaagcatatttgaaatttttgtaacatactgaattatgtttcatttcctaatgagtttaggcc 6014412  T
Q  108 ttgtttggacatacagtttaagtaagcacttgtagcataaacgtttattacatactagtgcttatgtataagctaattccacaacaaaagataacataaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  6014413 ttgtttggacatacagtttaagtaagcacttgtagcataaacgtttattacatactagtgcttatgtattagctaattctacaacaaaagataacataaa 6014512  T
Q  208 gtcaacctattctcatattagttataaattgtttccataagttatcttgaagaacctatggaaataatttcaaaacagcttatgcacctgtcataagttg 307  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6014513 gtcaacctattctcatattagttataaactgtttccataagttatcttgaagaacctatggaaataatctcaaaacagcttatgcacctgtcataagttg 6014612  T
Q  308 tttcgataatttctattagatagtatcactagttttat 345  Q
    |||| |||||||||||||||||||||||||||||||||    
T  6014613 tttccataatttctattagatagtatcactagttttat 6014650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 384 - 529
Target Start/End: Original strand, 6014776 - 6014921
Alignment:
Q  384 gatttttacctaaaaccttaggtattgggtatatcggtcatcactagcttggtccatactagggtcacactcctgtttcctatcgagtctaaccagggtt 483  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  6014776 gatttttacctaaaaccttaggtattgggtatatcggtcatcactagtttggtccatactagggccacactcctgtttcctatcaagtctaaccagggtt 6014875  T
Q  484 tggataccatttgttgggggatcaaaagtggcaatgggctaattgt 529  Q
    | ||||||||||||||||||||||||||||||||||| ||||||||    
T  6014876 ttgataccatttgttgggggatcaaaagtggcaatggactaattgt 6014921  T

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Target: chr6; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 6007357 - 6007427
Alignment:
Q  8 ggtcttccaacatcatgatcaagaattcggcaatgcgcaagcatatttgaaatttttgtaacatactgaat 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6007357 ggtcttccaacatcatgatcaagaattcggcaatgcgcaagcatatttgaaatttttgtaacatactgaat 6007427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 340 - 384
Target Start/End: Original strand, 6014693 - 6014737
Alignment:
Q  340 ttttataagtttgtggtcaataagttcatgttgggagtgacaatg 384  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  6014693 ttttataaatttgtggtcaataagttcatgttgggagtgacaatg 6014737  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 164 - 247
Target Start/End: Complemental strand, 10452496 - 10452413
Alignment:
Q  164 agtgcttatgtataagctaattccacaacaaaagataacataaagtcaacctattctcatattagttataaattgtttccataa 247  Q
    ||||||||||||||||||| ||| | ||||||| |||| ||||| |||| ||||| |||||| || ||||| ||||||||||||    
T  10452496 agtgcttatgtataagctatttctataacaaaatataaaataaaatcaaactattttcatataagctataagttgtttccataa 10452413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 109 - 212
Target Start/End: Original strand, 9027458 - 9027559
Alignment:
Q  109 tgtttggacatacagtttaagtaagcacttgtagcataaacgtttattacatactagtgcttatgtataagctaattccacaacaaaagataacataaag 208  Q
    |||||||| | ||||||||||||||| ||| |||||| |||  |||||| |||  ||||||||| ||||||||| ||| |||| | ||||||| ||||||    
T  9027458 tgtttggataaacagtttaagtaagcgcttatagcatgaacacttattatata--agtgcttatctataagctatttctacaatagaagataaaataaag 9027555  T
Q  209 tcaa 212  Q
    ||||    
T  9027556 tcaa 9027559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 129 - 212
Target Start/End: Original strand, 21959629 - 21959710
Alignment:
Q  129 gtaagcacttgtagcataaacgtttattacatactagtgcttatgtataagctaattccacaacaaaagataacataaagtcaa 212  Q
    |||||||||| |||||||| | |||||  ||||  |||||||| |||||||||| ||||| |||||||||||| ||||||||||    
T  21959629 gtaagcacttttagcataagcctttat--catagaagtgcttaagtataagctatttccataacaaaagataaaataaagtcaa 21959710  T

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Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 176 - 253
Target Start/End: Original strand, 1402942 - 1403019
Alignment:
Q  176 taagctaattccacaacaaaagataacataaagtcaacctattctcatattagttataaattgtttccataagttatc 253  Q
    ||||||| ||| | |||||||||||| ||||||| || ||||| |||||| || |||||||||||| |||||| ||||    
T  1402942 taagctatttctataacaaaagataaaataaagttaaactattttcatataagctataaattgttttcataagctatc 1403019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 311
Target Start/End: Complemental strand, 9668118 - 9667974
Alignment:
Q  167 gcttatgtataagctaattccacaacaaaagataacataaagtcaacctattctcatattagttataaattgtttccataagttatcttgaagaacctat 266  Q
    |||||| ||||||||| ||  | |||||||||||||||| |||| |  | || |||||| || || || |||||| |||||  | | | | ||| | |||    
T  9668118 gcttatatataagctatttgtataacaaaagataacatagagtcgaattgttttcatataagctacaatttgttttcataaactgtttcggagagcttat 9668019  T
Q  267 ggaaataatttcaaaacagcttatgcacctgtcataagttgtttc 311  Q
    |||||||| || ||||||||||||| || ||||||||||||||||    
T  9668018 ggaaataagttgaaaacagcttatggacatgtcataagttgtttc 9667974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 310
Target Start/End: Complemental strand, 20368253 - 20368170
Alignment:
Q  227 agttataaattgtttccataagttatcttgaagaacctatggaaataatttcaaaacagcttatgcacctgtcataagttgttt 310  Q
    |||||||| |||||| |||||| | ||||| ||||| |||| |||||| || |||  |||||||| || |||||||||||||||    
T  20368253 agttataagttgttttcataagctttcttggagaacttatgaaaataagttgaaactagcttatgaacatgtcataagttgttt 20368170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 166 - 248
Target Start/End: Complemental strand, 29274363 - 29274281
Alignment:
Q  166 tgcttatgtataagctaattccacaacaaaagataacataaagtcaacctattctcatattagttataaattgtttccataag 248  Q
    ||||||||||||||||| ||| | | |||||||||| ||||||||||  | || |||||| || |||||| ||||| ||||||    
T  29274363 tgcttatgtataagctatttctatagcaaaagataaaataaagtcaaattgttttcatataagctataaactgttttcataag 29274281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 169 - 310
Target Start/End: Complemental strand, 33500612 - 33500470
Alignment:
Q  169 ttatgtataagctaattccacaacaaaagataacataaagtcaacctattctcatattagttataaattgtttccataagttatcttgaagaacctatgg 268  Q
    |||||||||||||| ||| | ||||||||||||  |||| |||| || ||   |||| ||||||||  |||||||  ||| |||| || ||||| |||||    
T  33500612 ttatgtataagctatttctataacaaaagataaagtaaaatcaaactgtttcaatataagttataagctgtttccgcaagctatcatgtagaacttatgg 33500513  T
Q  269 aaataa-tttcaaaacagcttatgcacctgtcataagttgttt 310  Q
    |||||| |   |||||| ||||||||| |||||||| ||||||    
T  33500512 aaataagtcgaaaaacaacttatgcacatgtcataaattgttt 33500470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 304
Target Start/End: Original strand, 30784570 - 30784630
Alignment:
Q  243 cataagttatcttgaagaacctatggaaataatttcaaaacagcttatgcacctgtcataag 304  Q
    |||||||||||||| ||| |||||||||||||  ||||||||||||||| || | |||||||    
T  30784570 cataagttatcttggaga-cctatggaaataagctcaaaacagcttatggacatttcataag 30784630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 2514636 - 2514684
Alignment:
Q  164 agtgcttatgtataagctaattccacaacaaaagataacataaagtcaa 212  Q
    ||||||||||||||||||| ||| | || ||||||||| ||||||||||    
T  2514636 agtgcttatgtataagctatttctataataaaagataaaataaagtcaa 2514684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 4248892 - 4248940
Alignment:
Q  164 agtgcttatgtataagctaattccacaacaaaagataacataaagtcaa 212  Q
    ||||||||| ||||||||| ||| | |||||||||||| ||||||||||    
T  4248892 agtgcttatatataagctatttcaataacaaaagataaaataaagtcaa 4248940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 273
Target Start/End: Complemental strand, 33787876 - 33787772
Alignment:
Q  169 ttatgtataagctaattccacaacaaaagataacataaagtcaacctattctcatattagttataaattgtttccataagttatcttgaagaacctatgg 268  Q
    |||||||||| ||| ||| | ||||||| |||| | ||||||||  |  | |||||| ||||||||  ||||| |||||||||||||| ||| | |||||    
T  33787876 ttatgtataaactatttctataacaaaatataaaacaaagtcaaattgatttcatataagttataagctgttttcataagttatcttggagagcttatgg 33787777  T
Q  269 aaata 273  Q
    |||||    
T  33787776 aaata 33787772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 125 - 225
Target Start/End: Complemental strand, 1247 - 1149
Alignment:
Q  125 ttaagtaagcacttgtagcataaacgtttattacatactagtgcttatgtataagctaattccacaacaaaagataacataaagtcaacctattctcata 224  Q
    |||| |||| |||| |||||||||||| ||| | |||  ||||||||||||||||||| ||| | |||||||||||| |||||||||| |||||||||||    
T  1247 ttaattaagtacttatagcataaacgtctatcatata--agtgcttatgtataagctatttctataacaaaagataaaataaagtcaaactattctcata 1150  T

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Target: scaffold0275 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 125 - 225
Target Start/End: Original strand, 2728 - 2826
Alignment:
Q  125 ttaagtaagcacttgtagcataaacgtttattacatactagtgcttatgtataagctaattccacaacaaaagataacataaagtcaacctattctcata 224  Q
    |||| |||| |||| |||||||||||| ||| | |||  ||||||||||||||||||| ||| | |||||||||||| |||||||||| |||||||||||    
T  2728 ttaattaagtacttatagcataaacgtctatcatata--agtgcttatgtataagctatttctataacaaaagataaaataaagtcaaactattctcata 2825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 165 - 310
Target Start/End: Original strand, 2996508 - 2996653
Alignment:
Q  165 gtgcttatgtataagctaattccacaacaaaagataacataaagtcaacctattctcatattagttataaattgtttccataagttatcttgaagaacct 264  Q
    ||||||||| |||||||| ||| | |||| ||||||| ||| ||||||  | || | |||| |||||||| |||||| |||||| ||||||| ||| | |    
T  2996508 gtgcttatgaataagctacttcgataacataagataaaatacagtcaaattgtttttatataagttataagttgttttcataagctatcttggagagcgt 2996607  T
Q  265 atggaaataatttcaaaacagcttatgcacctgtcataagttgttt 310  Q
    ||| |||||| || |||| |||||||| || |||||||||||||||    
T  2996608 atgaaaataagttgaaaaaagcttatggacatgtcataagttgttt 2996653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 158 - 310
Target Start/End: Original strand, 23819018 - 23819169
Alignment:
Q  158 catactagtgcttatgtataagctaattccacaacaaaagataacataaagtcaacctattctcatattagttataaattgtttccataagttatcttga 257  Q
    ||||| |||| ||||||||||| || ||||| ||||||  |||| ||  |||||| || || |||||| ||||||||  ||||| |||||| ||||||||    
T  23819018 catacaagtgtttatgtataagttatttccataacaaat-ataaaatgtagtcaaactgttttcatataagttataacatgttttcataagctatcttga 23819116  T
Q  258 agaacctatggaaataatttcaaaacagcttatgcacctgtcataagttgttt 310  Q
    ||| | ||| |||||||  | |||||| |||||| || ||||||||| |||||    
T  23819117 agagcttatagaaataagatgaaaacaacttatggacatgtcataagctgttt 23819169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 230 - 291
Target Start/End: Complemental strand, 55414490 - 55414429
Alignment:
Q  230 tataaattgtttccataagttatcttgaagaacctatggaaataatttcaaaacagcttatg 291  Q
    |||||||||||| |||||||||||||| ||||| |||| |||||| || |||| ||||||||    
T  55414490 tataaattgttttcataagttatcttggagaacttatgaaaataagttgaaaaaagcttatg 55414429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 132 - 247
Target Start/End: Original strand, 24193489 - 24193602
Alignment:
Q  132 agcacttgtagcataaacgtttattacatactagtgcttatgtataagctaattccacaacaaaagataacataaagtcaacctattctcatattagtta 231  Q
    ||||||| ||||||||||| |||| | |||  ||| |||||||||||| || ||  ||||||||| |||| | | ||| || ||||| |||||| |||||    
T  24193489 agcacttatagcataaacgcttatcatata--agtacttatgtataagttatttttacaacaaaatataaaacagagttaaactattttcatataagtta 24193586  T
Q  232 taaattgtttccataa 247  Q
    ||| ||||||||||||    
T  24193587 taagttgtttccataa 24193602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 27671968 - 27671920
Alignment:
Q  164 agtgcttatgtataagctaattccacaacaaaagataacataaagtcaa 212  Q
    ||||||| |||||||| || |||||||||||||||||| ||||||||||    
T  27671968 agtgcttgtgtataagttatttccacaacaaaagataaaataaagtcaa 27671920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 190 - 274
Target Start/End: Original strand, 52735082 - 52735166
Alignment:
Q  190 aacaaaagataacataaagtcaacctattctcatattagttataaattgtttccataagttatcttgaagaacctatggaaataa 274  Q
    |||||||||||| ||||||||||  || | |||||| |||||||  |||||| | |||| ||||||||||| | |||||||||||    
T  52735082 aacaaaagataaaataaagtcaaattactttcatataagttatatgttgttttcgtaagctatcttgaagagcttatggaaataa 52735166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 247
Target Start/End: Complemental strand, 45128442 - 45128363
Alignment:
Q  168 cttatgtataagctaattccacaacaaaagataacataaagtcaacctattctcatattagttataaattgtttccataa 247  Q
    ||||||||||| ||| ||| | |||||||||||| || || ||||  ||||||||||| || |||||||||||| |||||    
T  45128442 cttatgtataaactatttctataacaaaagataaaatcaaatcaaattattctcatataagctataaattgttttcataa 45128363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 190 - 248
Target Start/End: Original strand, 8130134 - 8130192
Alignment:
Q  190 aacaaaagataacataaagtcaacctattctcatattagttataaattgtttccataag 248  Q
    |||||||||||||||||||||||  |||| |||||| || |||||| ||||| ||||||    
T  8130134 aacaaaagataacataaagtcaaattattttcatataagctataaactgttttcataag 8130192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 164 - 218
Target Start/End: Original strand, 47970252 - 47970306
Alignment:
Q  164 agtgcttatgtataagctaattccacaacaaaagataacataaagtcaacctatt 218  Q
    ||||||||||||||||||| ||| | |||||||||||| || ||||||| |||||    
T  47970252 agtgcttatgtataagctatttctataacaaaagataaaatgaagtcaaactatt 47970306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 307
Target Start/End: Original strand, 19250546 - 19250623
Alignment:
Q  230 tataaattgtttccataagttatcttgaagaacctatggaaataatttcaaaacagcttatgcacctgtcataagttg 307  Q
    ||||| ||||||  ||||||||||||||||| | |||  |||||| || ||| ||||||||| || ||||||||||||    
T  19250546 tataagttgtttttataagttatcttgaagagcatataaaaataagttgaaatcagcttatggacatgtcataagttg 19250623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 41088318 - 41088363
Alignment:
Q  164 agtgcttatgtataagctaattccacaacaaaagataacataaagt 209  Q
    ||||||||||||||| ||| || ||||||||||||||| |||||||    
T  41088318 agtgcttatgtataaactattttcacaacaaaagataaaataaagt 41088363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 291
Target Start/End: Complemental strand, 54069487 - 54069426
Alignment:
Q  230 tataaattgtttccataagttatcttgaagaacctatggaaataatttcaaaacagcttatg 291  Q
    ||||| ||||||  ||||||||| ||||||||| |||| |||||| || |||||||||||||    
T  54069487 tataatttgtttttataagttatattgaagaacatatgaaaataagttaaaaacagcttatg 54069426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 266 - 310
Target Start/End: Original strand, 1965977 - 1966021
Alignment:
Q  266 tggaaataatttcaaaacagcttatgcacctgtcataagttgttt 310  Q
    ||||||||| || ||||||||||||| || |||||||||||||||    
T  1965977 tggaaataagttaaaaacagcttatgaacatgtcataagttgttt 1966021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 222 - 274
Target Start/End: Complemental strand, 18628621 - 18628569
Alignment:
Q  222 atattagttataaattgtttccataagttatcttgaagaacctatggaaataa 274  Q
    |||| ||||||||| ||||| |||||||||||||| ||| | |||||||||||    
T  18628621 atataagttataaactgttttcataagttatcttggagagcttatggaaataa 18628569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 168 - 248
Target Start/End: Original strand, 24443976 - 24444056
Alignment:
Q  168 cttatgtataagctaattccacaacaaaagataacataaagtcaacctattctcatattagttataaattgtttccataag 248  Q
    ||||||||||||| | ||| ||||||||| |||| ||||| |||| | ||| |||||| || ||||| |||||| ||||||    
T  24443976 cttatgtataagcgatttctacaacaaaatataaaataaattcaaacaattttcatataagctataagttgttttcataag 24444056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 51044595 - 51044547
Alignment:
Q  164 agtgcttatgtataagctaattccacaacaaaagataacataaagtcaa 212  Q
    |||| |||||||||||||| ||| | |||||||||||| ||||||||||    
T  51044595 agtgtttatgtataagctatttctataacaaaagataaaataaagtcaa 51044547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 158 - 316
Target Start/End: Original strand, 32172581 - 32172739
Alignment:
Q  158 catactagtgcttatgtataagctaattccacaacaaaagataacataaagtcaacctattctcatattagttataaattgtttccataagttatcttga 257  Q
    ||||| || |||||||||||| ||| ||| |||||||||||||| || |||||||  | ||  ||||| || |||||  ||||| |||||| |||| |||    
T  32172581 catacaagagcttatgtataaactatttctacaacaaaagataaaatgaagtcaagttgtttacatataagctataagctgttttcataagctatcatga 32172680  T
Q  258 agaacctatggaaataatttcaaaacagcttatgcacctgtcataagttgtttcgataa 316  Q
    |||||  ||||||||||  | ||||  ||||||| || |||||||||||||||| ||||    
T  32172681 agaactaatggaaataagctgaaaatggcttatggacatgtcataagttgtttccataa 32172739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 109 - 211
Target Start/End: Complemental strand, 29115402 - 29115302
Alignment:
Q  109 tgtttggacatacagtttaagtaagcacttgtagcataaacgtttattacatactagtgcttatgtataagctaattccacaacaaaagataacataaag 208  Q
    |||||||| | ||| ||||| || || ||| |||||||||| |||||  ||||  ||||||||||||||||||| ||| |||||||||| ||| ||||||    
T  29115402 tgtttggataaacactttaattacgcgcttatagcataaacatttat--cataaaagtgcttatgtataagctatttctacaacaaaaggtaaaataaag 29115305  T
Q  209 tca 211  Q
    |||    
T  29115304 tca 29115302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 165 - 212
Target Start/End: Original strand, 39128574 - 39128621
Alignment:
Q  165 gtgcttatgtataagctaattccacaacaaaagataacataaagtcaa 212  Q
    |||||||||||||||||||||| | |||||||||||| ||||||||||    
T  39128574 gtgcttatgtataagctaattctataacaaaagataaaataaagtcaa 39128621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 212
Target Start/End: Complemental strand, 7096269 - 7096215
Alignment:
Q  158 catactagtgcttatgtataagctaattccacaacaaaagataacataaagtcaa 212  Q
    ||||| ||||||||||||||||||| ||| | |||||||||||| ||||||||||    
T  7096269 catacaagtgcttatgtataagctatttctataacaaaagataaaataaagtcaa 7096215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 233 - 310
Target Start/End: Complemental strand, 37611282 - 37611205
Alignment:
Q  233 aaattgtttccataagttatcttgaagaacctatggaaataatttcaaaacagcttatgcacctgtcataagttgttt 310  Q
    ||||||||| |||||| ||||||| ||| | |||||||||||  | ||||||||||||| || ||||| |||||||||    
T  37611282 aaattgttttcataagctatcttggagagcttatggaaataacctgaaaacagcttatgaacatgtcacaagttgttt 37611205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 233 - 310
Target Start/End: Complemental strand, 37788012 - 37787935
Alignment:
Q  233 aaattgtttccataagttatcttgaagaacctatggaaataatttcaaaacagcttatgcacctgtcataagttgttt 310  Q
    ||||||||| |||||| ||||||| ||| | |||||||||||  | ||||||||||||| || ||||| |||||||||    
T  37788012 aaattgttttcataagctatcttggagagcttatggaaataacctgaaaacagcttatgaacatgtcacaagttgttt 37787935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 164 - 311
Target Start/End: Complemental strand, 9202884 - 9202736
Alignment:
Q  164 agtgcttatgtataagctaattccacaacaaaagataacataaagtcaacctattctcatattagttataaattgtttccataagttatcttgaagaacc 263  Q
    ||||||||| ||||||||| |||   | |||||||||| ||||||| ||  | || |||||| ||  ||||  ||||| ||||||||||||||||||||     
T  9202884 agtgcttatatataagctatttctgtagcaaaagataaaataaagttaaattgttttcatataagcaataagctgttttcataagttatcttgaagaact 9202785  T
Q  264 tatggaaataatttcaaaacagcttatgcac-ctgtcataagttgtttc 311  Q
    |||| ||||||  |  |||||||||||| ||  ||||||||| ||||||    
T  9202784 tatgaaaataagctggaaacagcttatgaacaatgtcataagctgtttc 9202736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 37063208 - 37063144
Alignment:
Q  166 tgcttatgtataagctaattccacaacaaaagataacataaagtcaacctattctcatattagtt 230  Q
    ||||||||||||| ||| ||| | |||||||||||| |||||||||| ||||| |||||| ||||    
T  37063208 tgcttatgtataaactatttctataacaaaagataaaataaagtcaaactattttcatataagtt 37063144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 316
Target Start/End: Original strand, 11457102 - 11457184
Alignment:
Q  233 aaattgtttccataagttatcttgaagaacctatggaaataatttcaaaacagcttatgcacctgtcataagttgtttcgataa 316  Q
    ||||||||| || ||||||||||| ||| | ||| |||||||| | ||| ||||||||| || |||||||||||||||| ||||    
T  11457102 aaattgttttcaaaagttatcttggagagcttatagaaataatatgaaa-cagcttatggacatgtcataagttgtttccataa 11457184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 311
Target Start/End: Complemental strand, 18704167 - 18704025
Alignment:
Q  168 cttatgtataagctaattccacaacaaaagataacataaagtcaacctattctcatattagttataaattgtttccataagttatcttgaagaacctatg 267  Q
    |||||||||||| || ||| | |||||||||||| |||||||||| ||||| | |||| || ||||| |||||| |||||| |||    |||| | ||||    
T  18704167 cttatgtataagttatttctataacaaaagataa-ataaagtcaagctatttttatataagctataagttgttttcataagctattacaaagatcttatg 18704069  T
Q  268 gaaataatttcaaaacagcttatgcacctgtcataagttgtttc 311  Q
    |||||||  | |||||| |||||  || ||| ||||||||||||    
T  18704068 gaaataagctgaaaacaacttatagacatgttataagttgtttc 18704025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 20982271 - 20982221
Alignment:
Q  164 agtgcttatgtataagctaattccacaacaaaagataacataaagtcaacc 214  Q
    ||||||||||||||||||| ||| | |||||| ||||| ||||||||||||    
T  20982271 agtgcttatgtataagctatttctataacaaaggataaaataaagtcaacc 20982221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 164 - 234
Target Start/End: Complemental strand, 35135798 - 35135728
Alignment:
Q  164 agtgcttatgtataagctaattccacaacaaaagataacataaagtcaacctattctcatattagttataa 234  Q
    |||| ||||||||||| || ||| | |||||||||||| |||||||||| ||||| |||||| || |||||    
T  35135798 agtgtttatgtataagatatttctataacaaaagataaaataaagtcaaactattttcatataagctataa 35135728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 310
Target Start/End: Complemental strand, 13604912 - 13604839
Alignment:
Q  237 tgtttccataagttatcttgaagaacctatggaaataatttcaaaacagcttatgcacctgtcataagttgttt 310  Q
    ||||| |||||||||||||||||| | |||| |||||| || |||||| | |||| || ||||||||| |||||    
T  13604912 tgttttcataagttatcttgaagagcttatgaaaataagttgaaaacaacgtatggacatgtcataagctgttt 13604839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 310
Target Start/End: Complemental strand, 21768260 - 21768187
Alignment:
Q  237 tgtttccataagttatcttgaagaacctatggaaataatttcaaaacagcttatgcacctgtcataagttgttt 310  Q
    ||||| |||||||||||||||||| | || | |||||| || |||||||| |||| || ||||||||| |||||    
T  21768260 tgttttcataagttatcttgaagagcttacgaaaataagttgaaaacagcgtatggacatgtcataagctgttt 21768187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 316
Target Start/End: Complemental strand, 11700414 - 11700362
Alignment:
Q  264 tatggaaataatttcaaaacagcttatgcacctgtcataagttgtttcgataa 316  Q
    |||| ||||||| | ||||||||||||| || |||||||||||||||| ||||    
T  11700414 tatgaaaataatctgaaaacagcttatggacatgtcataagttgtttccataa 11700362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 190 - 274
Target Start/End: Original strand, 26516360 - 26516444
Alignment:
Q  190 aacaaaagataacataaagtcaacctattctcatattagttataaattgtttccataagttatcttgaagaacctatggaaataa 274  Q
    ||||| |||||| |||||||||| ||| | |||||| ||||||||| ||||| |||||| ||||| | |||   |||||||||||    
T  26516360 aacaatagataaaataaagtcaaactactttcatataagttataaactgttttcataagctatctagcagattttatggaaataa 26516444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 252
Target Start/End: Original strand, 36539708 - 36539768
Alignment:
Q  192 caaaagataacataaagtcaacctattctcatattagttataaattgtttccataagttat 252  Q
    |||||||||| ||||||||||||| || |||||| || ||||| ||||||  |||||||||    
T  36539708 caaaagataaaataaagtcaacctgttttcatataagctataagttgtttttataagttat 36539768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 190 - 234
Target Start/End: Original strand, 39750103 - 39750147
Alignment:
Q  190 aacaaaagataacataaagtcaacctattctcatattagttataa 234  Q
    |||||||||||| |||||||||| ||||| |||||| ||||||||    
T  39750103 aacaaaagataaaataaagtcaaactattttcatataagttataa 39750147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 231 - 316
Target Start/End: Original strand, 37273135 - 37273220
Alignment:
Q  231 ataaattgtttccataagttatcttgaagaacctatggaaataatttcaaaacagcttatgcacctgtcataagttgtttcgataa 316  Q
    ||||| ||||| |||||| ||||||| ||||| ||||||||||| || |||||| |||||| || |||||||||||||||| ||||    
T  37273135 ataaactgttttcataagctatcttggagaacttatggaaataagttgaaaacaacttatggacatgtcataagttgtttccataa 37273220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 221 - 321
Target Start/End: Complemental strand, 24603831 - 24603731
Alignment:
Q  221 catattagttataaattgtttccataagttatcttgaagaacctatggaaataatttcaaaacagcttatgcacctgtcataagttgtttcgataatttc 320  Q
    ||||||||||||||  |||||||||||||||||||| || || ||||||||||  || |||||||||||||  | ||||||||  |||||| |||| |||    
T  24603831 catattagttataacctgtttccataagttatcttggaggacttatggaaatatcttgaaaacagcttatgggcatgtcataaactgtttcaataagttc 24603732  T
Q  321 t 321  Q
    |    
T  24603731 t 24603731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 164 - 225
Target Start/End: Original strand, 27792806 - 27792867
Alignment:
Q  164 agtgcttatgtataagctaattccacaacaaaagataacataaagtcaacctattctcatat 225  Q
    ||||||||||||||||||| ||| | |||||||||||| |||| ||||| ||||| ||||||    
T  27792806 agtgcttatgtataagctatttcaaaaacaaaagataaaataaggtcaaactattttcatat 27792867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 2321110 - 2321169
Alignment:
Q  165 gtgcttatgtataagctaattccacaacaaaagataacataaagtcaacctattctcatat 225  Q
    ||||||| |||||||||||||| | |||||||||||| |||||||||| ||||| ||||||    
T  2321110 gtgcttacgtataagctaattcaataacaaaagataa-ataaagtcaaactattttcatat 2321169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 247
Target Start/End: Original strand, 1395605 - 1395688
Alignment:
Q  164 agtgcttatgtataagctaattccacaacaaaagataacataaagtcaacctattctcatattagttataaattgtttccataa 247  Q
    ||||| ||||||||||||| ||| | |||||||||||| ||||||||||  |||| |||||| || ||| || ||||| |||||    
T  1395605 agtgcatatgtataagctatttctataacaaaagataaaataaagtcaaattattttcatataagctatgaactgttttcataa 1395688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 291
Target Start/End: Original strand, 25776111 - 25776178
Alignment:
Q  224 attagttataaattgtttccataagttatcttgaagaacctatggaaataatttcaaaacagcttatg 291  Q
    ||||| ||||| |||||| |||||||| ||||||||||| ||||||| |||  | |||||||||||||    
T  25776111 attagctataagttgttttcataagttgtcttgaagaacttatggaagtaagctgaaaacagcttatg 25776178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 291
Target Start/End: Complemental strand, 4526438 - 4526377
Alignment:
Q  230 tataaattgtttccataagttatcttgaagaacctatggaaataatttcaaaacagcttatg 291  Q
    ||||| ||||||  ||||||||| ||||||||| |||| |||||| || |||||||||||||    
T  4526438 tataagttgtttttataagttattttgaagaacttatgaaaataacttaaaaacagcttatg 4526377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 316
Target Start/End: Original strand, 41452496 - 41452609
Alignment:
Q  203 ataaagtcaacctattctcatattagttataaattgtttccataagttatcttgaagaacctatggaaataatttcaaaacagcttatgcacctgtcata 302  Q
    |||||||||| || || ||||||||||| |||  ||||| |||||| |||| || ||||  | |||||||||  | ||||||||||||  || | |||||    
T  41452496 ataaagtcaaactgttttcatattagttgtaagctgttttcataagctatcctggagaagttgtggaaataaggtgaaaacagcttatagacatatcata 41452595  T
Q  303 agttgtttcgataa 316  Q
    ||||||||| ||||    
T  41452596 agttgtttctataa 41452609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 20192742 - 20192694
Alignment:
Q  164 agtgcttatgtataagctaattccacaacaaaagataacataaagtcaa 212  Q
    ||||||||||||||||||| ||  | |||||||||||| ||||||||||    
T  20192742 agtgcttatgtataagctatttatataacaaaagataaaataaagtcaa 20192694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 40122884 - 40122840
Alignment:
Q  168 cttatgtataagctaattccacaacaaaagataacataaagtcaa 212  Q
    ||||||||||||||| ||| | |||||||||||| ||||||||||    
T  40122884 cttatgtataagctatttcaataacaaaagataaaataaagtcaa 40122840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 41028987 - 41028939
Alignment:
Q  164 agtgcttatgtataagctaattccacaacaaaagataacataaagtcaa 212  Q
    ||||||||||||||||||| ||| | ||||||||| || ||||||||||    
T  41028987 agtgcttatgtataagctatttctataacaaaagaaaaaataaagtcaa 41028939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 164 - 224
Target Start/End: Original strand, 53457311 - 53457371
Alignment:
Q  164 agtgcttatgtataagctaattccacaacaaaagataacataaagtcaacctattctcata 224  Q
    |||| ||| |||||||||| ||| | |||||||||||| |||||||||| ||||| |||||    
T  53457311 agtgtttacgtataagctacttcgataacaaaagataaaataaagtcaaactattttcata 53457371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 130 - 260
Target Start/End: Complemental strand, 787274 - 787146
Alignment:
Q  130 taagcacttgtagcataaacgtttattacatactagtgcttatgtataagctaattccacaacaaaagataacataaagtcaacctattctcatattagt 229  Q
    ||||||||| ||||||||| |||||| |  ||  ||||||||||| ||||||  ||||  |||| ||||||| ||||||||||  | || |||||| ||     
T  787274 taagcacttatagcataaatgtttatcatcta--agtgcttatgtttaagctgtttccgtaacataagataaaataaagtcaaattgttatcatataagc 787177  T
Q  230 tataaattgtttccataagttatcttgaaga 260  Q
    |||||| ||||| ||||||||||||||||||    
T  787176 tataaactgttttcataagttatcttgaaga 787146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 190 - 307
Target Start/End: Original strand, 31862453 - 31862570
Alignment:
Q  190 aacaaaagataacataaagtcaacctattctcatattagttataaattgtttccataagttatcttgaagaacctatggaaataatttcaaaacagctta 289  Q
    |||||||||||| |||||||||| |||||||| ||| || |||||  ||||| ||||||||||| |  ||| | |||| ||||||  | |||||||||||    
T  31862453 aacaaaagataatataaagtcaaactattctcgtataagctataagatgttttcataagttatcctagagagcttatgaaaataagctgaaaacagctta 31862552  T
Q  290 tgcacctgtcataagttg 307  Q
    ||||   |||||||||||    
T  31862553 tgcataggtcataagttg 31862570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 107 - 274
Target Start/End: Original strand, 4558677 - 4558842
Alignment:
Q  107 cttgtttggacatacagtttaagtaagcacttgtagcataaacgtttattacatactagtgcttatgtataagctaattccacaacaaaagataacataa 206  Q
    |||||||||| | |||  |||| || || ||| ||||||||||||||||||  ||  |||| |||||||||||||| ||| | || ||||||||| ||||    
T  4558677 cttgtttggataaacaacttaattacgcgcttatagcataaacgtttattatgta--agtgtttatgtataagctatttctataataaaagataaaataa 4558774  T
Q  207 agtcaacctattctcatattagttataaattgtttccataagttatcttgaagaacctatggaaataa 274  Q
    ||| ||  |||| ||||||  | |||||  |||||||||||| |||| |  ||| | |||||||||||    
T  4558775 agttaaattattttcatatatgctataagctgtttccataagctatcctagagagcttatggaaataa 4558842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 14482136 - 14482184
Alignment:
Q  164 agtgcttatgtataagctaattccacaacaaaagataacataaagtcaa 212  Q
    ||||||||||||||| ||| ||| | |||||||||||| ||||||||||    
T  14482136 agtgcttatgtataaactatttctataacaaaagataaaataaagtcaa 14482184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 31916552 - 31916592
Alignment:
Q  167 gcttatgtataagctaattccacaacaaaagataacataaa 207  Q
    ||||||||||||||| |||| | ||||||||||||||||||    
T  31916552 gcttatgtataagcttattctataacaaaagataacataaa 31916592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 168 - 248
Target Start/End: Original strand, 35869775 - 35869855
Alignment:
Q  168 cttatgtataagctaattccacaacaaaagataacataaagtcaacctattctcatattagttataaattgtttccataag 248  Q
    ||||||||||||| | ||| ||||||||| |||| ||||| |||| | ||| |||||| || ||||| |||||| ||||||    
T  35869775 cttatgtataagcgatttctacaacaaaatataaaataaattcaaacaattttcatataagctataagttgttttcataag 35869855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 243 - 316
Target Start/End: Complemental strand, 34652093 - 34652020
Alignment:
Q  243 cataagttatcttgaagaacctatggaaataatttcaaaacagcttatgcacctgtcataagttgtttcgataa 316  Q
    |||||| ||||||| ||| | ||||||||||| || ||||||||||||| || |||||||||||||||| ||||    
T  34652093 cataagctatcttggagagcttatggaaataagttgaaaacagcttatggacatgtcataagttgtttctataa 34652020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 309
Target Start/End: Complemental strand, 1939442 - 1939323
Alignment:
Q  190 aacaaaagataacataaagtcaacctattctcatatt-agttataaattgtttccataagttatcttgaagaacctatggaaataatttcaaaacagctt 288  Q
    |||||||||||| ||||||| || ||||| ||||||| || ||||| | |||| |||||| |||  || ||| | ||||||||||| || ||||||||||    
T  1939442 aacaaaagataaaataaagtgaaactattttcatattgagctataact-gttttcataagctatactggagagcttatggaaataagttgaaaacagctt 1939344  T
Q  289 atgcacctgtcataagttgtt 309  Q
    ||| || ||||||||||||||    
T  1939343 atggacatgtcataagttgtt 1939323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 190 - 260
Target Start/End: Original strand, 6988075 - 6988145
Alignment:
Q  190 aacaaaagataacataaagtcaacctattctcatattagttataaattgtttccataagttatcttgaaga 260  Q
    |||||||||||| ||||||||||  |||| || || ||||||||| |||||| |||||| |||||||||||    
T  6988075 aacaaaagataaaataaagtcaaattattttcttactagttataagttgttttcataagctatcttgaaga 6988145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 125 - 221
Target Start/End: Original strand, 31461335 - 31461429
Alignment:
Q  125 ttaagtaagcacttgtagcataaacgtttattacatactagtgcttatgtataagctaattccacaacaaaagataacataaagtcaacctattctc 221  Q
    |||| ||||||||| |||||||||||| ||| | |||  |||| |||| ||||||||| ||| | |||||||||||| ||||||||||  |||||||    
T  31461335 ttaattaagcacttctagcataaacgtatatcatata--agtggttatatataagctatttctataacaaaagataaaataaagtcaaattattctc 31461429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 193 - 274
Target Start/End: Complemental strand, 36863732 - 36863651
Alignment:
Q  193 aaaagataacataaagtcaacctattctcatattagttataaattgtttccataagttatcttgaagaacctatggaaataa 274  Q
    ||||||||| |||||||||| | ||| | |||| ||||||||||||||| |||||| ||||||| ||| | |||| ||||||    
T  36863732 aaaagataaaataaagtcaaacaatttttatataagttataaattgttttcataagctatcttggagagcttatgaaaataa 36863651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 307
Target Start/End: Original strand, 35485876 - 35485994
Alignment:
Q  189 caacaaaagataacataaagtcaacctattctcat-attagttataaattgtttccataagttatcttgaagaacctatggaaataatttcaaaacagct 287  Q
    |||| |||||||| |||||||||| ||||| |||| || || ||||| ||||||  ||||| |||| |||||| ||||||||||| |  | |||||||||    
T  35485876 caaccaaagataaaataaagtcaaactatt-tcattataagctataagttgtttttataagctatcctgaagagcctatggaaatgagctgaaaacagct 35485974  T
Q  288 tatgcacctgtcataagttg 307  Q
    |||| || | ||||||||||    
T  35485975 tatgaacatatcataagttg 35485994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 188 - 274
Target Start/End: Original strand, 11513856 - 11513942
Alignment:
Q  188 acaacaaaagataacataaagtcaacctattctcatattagttataaattgtttccataagttatcttgaagaacctatggaaataa 274  Q
    |||||||||||||| ||||||||||  | || |||||| || ||||| |||||| |||||| |||| || ||||| | |||||||||    
T  11513856 acaacaaaagataaaataaagtcaaattgttttcatataagctataagttgttttcataagctatcatggagaacttttggaaataa 11513942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 164 - 210
Target Start/End: Original strand, 12215741 - 12215787
Alignment:
Q  164 agtgcttatgtataagctaattccacaacaaaagataacataaagtc 210  Q
    ||||||||||||||| ||| ||| |||||||||||||| ||||||||    
T  12215741 agtgcttatgtataaactatttctacaacaaaagataaaataaagtc 12215787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 167 - 225
Target Start/End: Complemental strand, 17952834 - 17952776
Alignment:
Q  167 gcttatgtataagctaattccacaacaaaagataacataaagtcaacctattctcatat 225  Q
    |||||| ||||||||| ||| | |||||||||||| |||||||||| ||||| ||||||    
T  17952834 gcttatatataagctatttctataacaaaagataaaataaagtcaaactattttcatat 17952776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 164 - 274
Target Start/End: Complemental strand, 18962174 - 18962064
Alignment:
Q  164 agtgcttatgtataagctaattccacaacaaaagataacataaagtcaacctattctcatattagttataaattgtttccataagttatcttgaagaacc 263  Q
    ||||||||||||| ||||| ||  | |||||||||||| ||||||| || || || |||||| || |||||| | ||| |||||| |||| || |||  |    
T  18962174 agtgcttatgtattagctatttttataacaaaagataaaataaagttaaactgttttcatataagctataaactattttcataagctatcatggagagac 18962075  T
Q  264 tatggaaataa 274  Q
    |||||||||||    
T  18962074 tatggaaataa 18962064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 164 - 310
Target Start/End: Original strand, 28933758 - 28933903
Alignment:
Q  164 agtgcttatgtataagctaattccacaacaaaagataacataaagtcaacctattctcatattagttataaattgtttccataagttatcttgaagaacc 263  Q
    |||||| |||||||||||| ||  | |||||||||||| || || ||||  |||| |||| | ||||||||||||||| |||||| |||| |  ||| |     
T  28933758 agtgctcatgtataagctatttatataacaaaagataaaatcaaatcaaattattttcatttaagttataaattgttttcataagctatcctagagagct 28933857  T
Q  264 tatggaaataatttcaaaacagcttatgcacctgtcataagttgttt 310  Q
     || ||||||| || |||||||| |||| || || ||||||||||||    
T  28933858 gatagaaataagttgaaaacagc-tatgaacatgccataagttgttt 28933903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 230 - 316
Target Start/End: Original strand, 32821809 - 32821895
Alignment:
Q  230 tataaattgtttccataagttatcttgaagaacctatggaaataatttcaaaacagcttatgcacctgtcataagttgtttcgataa 316  Q
    |||||| ||||| |||||| |||| | |||| | ||| |||||||  | ||||||||||||| || |||||||||||||||| ||||    
T  32821809 tataaactgttttcataagctatcctaaagagcttatagaaataaactgaaaacagcttatggacatgtcataagttgtttctataa 32821895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 241
Target Start/End: Original strand, 25609730 - 25609807
Alignment:
Q  164 agtgcttatgtataagctaattccacaacaaaagataacataaagtcaacctattctcatattagttataaattgttt 241  Q
    ||||||||||||||||||| ||| | || ||||||||| ||||||||||  |||| || ||| || ||||| ||||||    
T  25609730 agtgcttatgtataagctatttctataagaaaagataaaataaagtcaatttattttcgtataagctataagttgttt 25609807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 310
Target Start/End: Complemental strand, 43456774 - 43456697
Alignment:
Q  233 aaattgtttccataagttatcttgaagaacctatggaaataatttcaaaacagcttatgcacctgtcataagttgttt 310  Q
    ||||||||||  |||| ||||||||| ||| |||||||||||  | ||||||| ||||| || |||||| ||||||||    
T  43456774 aaattgtttctgtaagctatcttgaaaaacatatggaaataagctgaaaacagtttatggacatgtcatgagttgttt 43456697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 316
Target Start/End: Complemental strand, 1742068 - 1742016
Alignment:
Q  264 tatggaaataatttcaaaacagcttatgcacctgtcataagttgtttcgataa 316  Q
    ||||||||||| || || | ||||||||||| |||||||||||||||| ||||    
T  1742068 tatggaaataagttgaagatagcttatgcacatgtcataagttgtttccataa 1742016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 166 - 310
Target Start/End: Original strand, 5133708 - 5133852
Alignment:
Q  166 tgcttatgtataagctaattccacaacaaaagataacataaagtcaacctattctcatattagttataaattgtttccataagttatcttgaagaaccta 265  Q
    ||||||||||||||||| ||| | |||||||||||| ||||||  || || || | |||| || |||||  ||||| || |||||||||   ||| | ||    
T  5133708 tgcttatgtataagctatttctataacaaaagataaaataaagataaactgtttttatataagatataagctgttttcaaaagttatctaagagagctta 5133807  T
Q  266 tggaaataatttcaaaacagcttatgcacctgtcataagttgttt 310  Q
    |||||||||  | |||  ||||||||  | |||||||||||||||    
T  5133808 tggaaataagctgaaagtagcttatgaccatgtcataagttgttt 5133852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 258 - 306
Target Start/End: Original strand, 10285888 - 10285936
Alignment:
Q  258 agaacctatggaaataatttcaaaacagcttatgcacctgtcataagtt 306  Q
    ||||| ||||||||||| || ||||||||||||| || |||||||||||    
T  10285888 agaacttatggaaataagttgaaaacagcttatggacatgtcataagtt 10285936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 192 - 317
Target Start/End: Original strand, 16322811 - 16322936
Alignment:
Q  192 caaaagataacataaagtcaacctattctcatattagttataaattgtttccataagttatcttgaagaacctatggaaataatttcaaaacagcttatg 291  Q
    |||||||||| ||| |||||| ||||| |||||  ||||||||  ||||| |||| | ||| ||||||| | |||||||||||  | |||||| ||||||    
T  16322811 caaaagataaaatatagtcaaactattttcatagaagttataagctgttttcataggctattttgaagagcttatggaaataagctaaaaacaacttatg 16322910  T
Q  292 cacctgtcataagttgtttcgataat 317  Q
      | || |||||||||||||||||||    
T  16322911 tgcatgacataagttgtttcgataat 16322936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 291
Target Start/End: Original strand, 52286615 - 52286739
Alignment:
Q  167 gcttatgtataagctaattccacaacaaaagataacataaagtcaacctattctcatattagttataaattgtttccataagttatcttgaagaacctat 266  Q
    ||||||| ||||| || ||| |||||||||||||| ||||||| || | ||| |||||| || |||||| | ||| ||||||| ||||||||||   |||    
T  52286615 gcttatgaataagatatttctacaacaaaagataaaataaagttaaacaattttcatataagctataaactattttcataagtcatcttgaagagtttat 52286714  T
Q  267 ggaaataatttcaaaacagcttatg 291  Q
    ||||||||  | |||| ||||||||    
T  52286715 ggaaataagctaaaaatagcttatg 52286739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 212
Target Start/End: Complemental strand, 43029594 - 43029489
Alignment:
Q  104 ggccttgtttggacatacagtttaagtaagcacttgtagcataaacgtttattacatactagtgcttatgtataagctaattccacaacaaaagataaca 203  Q
    ||||||||||||| | ||| ||||| ||||||||| ||||||||  | ||||   |||  ||||||||||||||| ||| ||| |||||||||||||| |    
T  43029594 ggccttgtttggataaacaatttaattaagcacttttagcataagtgattat---atatgagtgcttatgtataacctatttctacaacaaaagataaaa 43029498  T
Q  204 taaagtcaa 212  Q
    |||| ||||    
T  43029497 taaattcaa 43029489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 29793716 - 29793761
Alignment:
Q  164 agtgcttatgtataagctaattccacaacaaaagataacataaagt 209  Q
    |||||||||||| |||||| ||| ||||||||||||||||||||||    
T  29793716 agtgcttatgtacaagctatttctacaacaaaagataacataaagt 29793761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 36151636 - 36151564
Alignment:
Q  169 ttatgtataagctaattccacaacaaaagataacataaagtcaacctattctcatattagttataaattgttt 241  Q
    |||||||||||||| ||| | |||||||||||| ||||||||||  | || || ||| |||||||||||||||    
T  36151636 ttatgtataagctatttcaataacaaaagataaaataaagtcaaattgttttcgtataagttataaattgttt 36151564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 247
Target Start/End: Complemental strand, 39348099 - 39348020
Alignment:
Q  168 cttatgtataagctaattccacaacaaaagataacataaagtcaacctattctcatattagttataaattgtttccataa 247  Q
    ||||||||||| |||||||  ||||||||||||| |||||||| | | |||||||||  || ||||| |||||| |||||    
T  39348099 cttatgtataaactaattctgcaacaaaagataaaataaagtccaaccattctcatacaagctataagttgttttcataa 39348020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 224 - 290
Target Start/End: Complemental strand, 22810704 - 22810638
Alignment:
Q  224 attagttataaattgtttccataagttatcttgaagaacctatggaaataatttcaaaacagcttat 290  Q
    ||||||||||| |||||| ||||||||||| |  ||||| || ||||||||  ||||||||||||||    
T  22810704 attagttataagttgttttcataagttatcatagagaacttacggaaataaggtcaaaacagcttat 22810638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 236 - 310
Target Start/End: Original strand, 35925696 - 35925770
Alignment:
Q  236 ttgtttccataagttatcttgaagaacctatggaaataatttcaaaacagcttatgcacctgtcataagttgttt 310  Q
    ||||||||||||| |||| || |||   ||||||||||| || ||||||||||||| || ||||||||| |||||    
T  35925696 ttgtttccataagctatcatggagagtttatggaaataagttgaaaacagcttatgaacatgtcataagctgttt 35925770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 164 - 210
Target Start/End: Complemental strand, 38651545 - 38651499
Alignment:
Q  164 agtgcttatgtataagctaattccacaacaaaagataacataaagtc 210  Q
    ||||||||||||||||||||||| | ||||||||||||  |||||||    
T  38651545 agtgcttatgtataagctaattctataacaaaagataaactaaagtc 38651499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 158 - 212
Target Start/End: Original strand, 42550169 - 42550223
Alignment:
Q  158 catactagtgcttatgtataagctaattccacaacaaaagataacataaagtcaa 212  Q
    ||||| ||||||||||||||||||| ||| || | ||||||||| ||||||||||    
T  42550169 catacaagtgcttatgtataagctagttctacgataaaagataaaataaagtcaa 42550223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 170 - 316
Target Start/End: Original strand, 43420198 - 43420344
Alignment:
Q  170 tatgtataagctaattccacaacaaaagataacataaagtcaacctattctcatattagttataaattgtttccataagttatcttgaagaacctatgga 269  Q
    ||||||||||||| ||||| ||| |||||||| |||||||||| || || | |||| ||||  || || ||| |||||| ||||| |||||   | ||||    
T  43420198 tatgtataagctatttccataacgaaagataaaataaagtcaaactttttttatataagttgcaagttattttcataagctatctggaagagattttgga 43420297  T
Q  270 aataatttcaaaacagcttatgcacctgtcataagttgtttcgataa 316  Q
    ||||| || ||| | | ||||| || ||||||||| |||||| ||||    
T  43420298 aataagttgaaagcggattatgaacatgtcataagctgtttccataa 43420344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 209
Target Start/End: Complemental strand, 172709 - 172668
Alignment:
Q  168 cttatgtataagctaattccacaacaaaagataacataaagt 209  Q
    ||||||||||||||| ||| | ||||||||||||||||||||    
T  172709 cttatgtataagctatttctataacaaaagataacataaagt 172668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 311
Target Start/End: Original strand, 26184689 - 26184829
Alignment:
Q  168 cttatgtataagctaattccacaacaaaagataacataaagtcaacctattctcatattagttataaattgtttccataagttatcttgaagaacctatg 267  Q
    ||||||||||| ||| ||| | || ||||| ||| ||||||||||  |||| |||||   || ||||  ||| | ||||| ||||| || ||| | ||||    
T  26184689 cttatgtataaactatttctataagaaaaggtaaaataaagtcaaattattttcata---gtcataatctgtattcataaattatcctggagagcttatg 26184785  T
Q  268 gaaataatttcaaaacagcttatgcacctgtcataagttgtttc 311  Q
    |||||||| | ||||||||||||| || ||||||||| ||||||    
T  26184786 gaaataatctgaaaacagcttatggacatgtcataagctgtttc 26184829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 291
Target Start/End: Complemental strand, 26779995 - 26779934
Alignment:
Q  230 tataaattgtttccataagttatcttgaagaacctatggaaataatttcaaaacagcttatg 291  Q
    ||||| |||||| |||||| ||||||||||||| |||| |||||| || |||||| ||||||    
T  26779995 tataagttgttttcataagctatcttgaagaacttatgaaaataagttgaaaacaacttatg 26779934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 301
Target Start/End: Complemental strand, 44032135 - 44031998
Alignment:
Q  164 agtgcttatgtataagctaattccacaacaaaagataacataaagtcaacctattctcatattagttataaattgtttccataagttatcttgaagaacc 263  Q
    |||| ||||||||||||   ||| | |||||||| ||| ||||||||||  | || |||||| || |||||| | ||| | |||||||||||||||| |     
T  44032135 agtgtttatgtataagccgtttctataacaaaagctaaaataaagtcaaattgttttcatataagctataaactattttcttaagttatcttgaagagct 44032036  T
Q  264 tatggaaataatttcaaaacagcttatgcacctgtcat 301  Q
    ||||||||| |  | |||| |||||||| || ||||||    
T  44032035 tatggaaattagctgaaaatagcttatggacatgtcat 44031998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 166 - 274
Target Start/End: Original strand, 5150873 - 5150981
Alignment:
Q  166 tgcttatgtataagctaattccacaacaaaagataacataaagtcaacctattctcatattagttataaattgtttccataagttatcttgaagaaccta 265  Q
    ||||||||||| |||||  || |||  |||| |||| |||||||||| ||||| |||| | |||| ||| |||||| |||||| |||| |||||| | ||    
T  5150873 tgcttatgtattagctatatctacaggaaaatataaaataaagtcaaactattttcatttaagttgtaatttgttttcataagctatcatgaagagctta 5150972  T
Q  266 tggaaataa 274  Q
    | |||||||    
T  5150973 tagaaataa 5150981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 238 - 310
Target Start/End: Complemental strand, 5592028 - 5591956
Alignment:
Q  238 gtttccataagttatcttgaagaacctatggaaataatttcaaaacagcttatgcacctgtcataagttgttt 310  Q
    |||| |||||| ||||||  | ||| ||||||||||| || ||||| |||||||||| ||||||||| |||||    
T  5592028 gttttcataagatatcttagataacttatggaaataaattgaaaacggcttatgcacgtgtcataagctgttt 5591956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 23895275 - 23895331
Alignment:
Q  169 ttatgtataagctaattccacaacaaaagataacataaagtcaacctattctcatat 225  Q
    |||||||||||||| ||| | |||||||||||| ||||| |||| || |||||||||    
T  23895275 ttatgtataagctatttctataacaaaagataaaataaattcaaactgttctcatat 23895331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 232 - 316
Target Start/End: Complemental strand, 38867899 - 38867815
Alignment:
Q  232 taaattgtttccataagttatcttgaagaacctatggaaataatttcaaaacagcttatgcacctgtcataagttgtttcgataa 316  Q
    |||| ||||| |||||||||||||||||||| |||| ||||||  | |||||| || ||| || | ||||||||| |||| ||||    
T  38867899 taaactgttttcataagttatcttgaagaacttatgaaaataagctaaaaacaactgatggacatatcataagttatttccataa 38867815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 45999424 - 45999376
Alignment:
Q  164 agtgcttatgtataagctaattccacaacaaaagataacataaagtcaa 212  Q
    |||||| |||||||||||| ||| | |||||||||||| ||||||||||    
T  45999424 agtgctcatgtataagctatttctataacaaaagataagataaagtcaa 45999376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 50319230 - 50319274
Alignment:
Q  168 cttatgtataagctaattccacaacaaaagataacataaagtcaa 212  Q
    ||||||||||||||| ||| | |||||||||||| ||||||||||    
T  50319230 cttatgtataagctatttctataacaaaagataaaataaagtcaa 50319274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 170 - 248
Target Start/End: Complemental strand, 5006639 - 5006561
Alignment:
Q  170 tatgtataagctaattccacaacaaaagataacataaagtcaacctattctcatattagttataaattgtttccataag 248  Q
    ||||||||||||| | | | |||||||||||| |||||||||| || || |||||| || |||||||||||| ||||||    
T  5006639 tatgtataagctattcctataacaaaagataaaataaagtcaaactgttttcatataaggtataaattgttttcataag 5006561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 274
Target Start/End: Original strand, 29363476 - 29363562
Alignment:
Q  188 acaacaaaagataacataaagtcaacctattctcatattagttataaattgtttccataagttatcttgaagaacctatggaaataa 274  Q
    |||||| ||||||| |||||||||| || || |||||||||||||||  ||||  ||||||||||| || ||| | |||||||||||    
T  29363476 acaacagaagataaaataaagtcaaactgttttcatattagttataagctgttatcataagttatcctggagagcttatggaaataa 29363562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 237 - 310
Target Start/End: Original strand, 12110367 - 12110440
Alignment:
Q  237 tgtttccataagttatcttgaagaacctatggaaataatttcaaaacagcttatgcacctgtcataagttgttt 310  Q
    ||||| |||||| ||||||||||||| |||| ||||||| | ||||||| || || || |||||||||||||||    
T  12110367 tgttttcataagctatcttgaagaacttatgaaaataatctaaaaacagtttgtgaacatgtcataagttgttt 12110440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 168 - 316
Target Start/End: Original strand, 4966094 - 4966242
Alignment:
Q  168 cttatgtataagctaattccacaacaaaagataacataaagtcaacctattctcatattagttataaattgtttccataagttatcttgaagaacctatg 267  Q
    ||||| |||||| || |||||||||||| ||||| ||||  |||| |  || ||||||||| |||||  ||||| ||||||  ||| |||||| | ||||    
T  4966094 cttatatataagttatttccacaacaaaggataaaataatatcaaacagttttcatattaggtataagctgttttcataagccatcctgaagagcttatg 4966193  T
Q  268 gaaataatttcaaaacagcttatgcacctgtcataagttgtttcgataa 316  Q
    |||||||  | |||||| |||||| || | |||||||| ||||| ||||    
T  4966194 gaaataaactgaaaacaacttatggacatatcataagtggtttctataa 4966242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 5276158 - 5276206
Alignment:
Q  164 agtgcttatgtataagctaattccacaacaaaagataacataaagtcaa 212  Q
    ||||||||||||||||||| ||  | |||||||||||||||||||||||    
T  5276158 agtgcttatgtataagctatttttataacaaaagataacataaagtcaa 5276206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 164 - 316
Target Start/End: Original strand, 30133983 - 30134135
Alignment:
Q  164 agtgcttatgtataagctaattccacaacaaaagataacataaagtcaacctattctcatattagttataaattgtttccataagttatcttgaagaacc 263  Q
    |||| |||||||||||||| ||  |||||||||||||| ||||||||||| | || || ||| || | |||  || || || |||||||||||||||       
T  30133983 agtgtttatgtataagctatttttacaacaaaagataaaataaagtcaacttgttttcgtataagctttaagctgatttcacaagttatcttgaagaggg 30134082  T
Q  264 tatggaaataatttcaaaacagcttatgcacctgtcataagttgtttcgataa 316  Q
    |||||||||||  | | ||||| ||||  || ||||||||| |||||| ||||    
T  30134083 tatggaaataaacttataacagattatagacatgtcataagctgtttccataa 30134135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 164 - 234
Target Start/End: Original strand, 31002695 - 31002765
Alignment:
Q  164 agtgcttatgtataagctaattccacaacaaaagataacataaagtcaacctattctcatattagttataa 234  Q
    ||||||||||||||| ||| ||| || ||||||||||| ||||||||||  |||| |||||| || |||||    
T  31002695 agtgcttatgtataaactatttcaaccacaaaagataaaataaagtcaaaatattttcatataagctataa 31002765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 201
Target Start/End: Complemental strand, 3610876 - 3610839
Alignment:
Q  164 agtgcttatgtataagctaattccacaacaaaagataa 201  Q
    ||||||||||||||||||| ||| ||||||||||||||    
T  3610876 agtgcttatgtataagctatttctacaacaaaagataa 3610839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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