View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1643-INSERTION-9 (Length: 490)
Name: NF1643-INSERTION-9
Description: NF1643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1643-INSERTION-9 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 14 - 490
Target Start/End: Original strand, 32991364 - 32991842
Alignment:
| Q |
14 |
aatagaatttcagatgttaatctcaatcaacagttctaaaccacaatggtagtactagtttctgacctgttatatgagtcagtcattaccatactctttt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32991364 |
aatagaatttcagatgttaatctcaatcaacagctctaaaccacaatggtagtactagtttctgacctgttatatgagtcagtcattaccatactctttt |
32991463 |
T |
|
| Q |
114 |
tatatataaaaattcacaaaaagaagaacaacatgtcacgggactgaaaaactgtattatttgtcatgttccacaccatgttttgaattgtctcttaatt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32991464 |
tatatataaaaattcacaaaaagaagaacaacatgtcacgggactgaaaaactgtattatttgtcatgttccacaccatgttttgaattgtctcttaatt |
32991563 |
T |
|
| Q |
214 |
gaattttgtttgtttcatcatgtcacaaacataaacacaccacatgtgacataatcccttatctttgttgcttttaaaagcattgctgcgttttgttttc |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32991564 |
gaattttgtttgtttcatcatgtcacaaacataaacacaccacatgtgacataatcccttatctttgttgcttttaaaagcattgctgcgttttgttttc |
32991663 |
T |
|
| Q |
314 |
ataacttcaagctttgttgatttcttcctctaaatcagtaacatggatgtgaattttaagtcactttcctttgaaaaatcagaagctgaacctgaagtgg |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32991664 |
ataacttcaagctttgttgatttcttcctctaaatcagtaacatggatgtgaattttaagtcactttcctttgaaaaatcagaagctgaacctgaagtgg |
32991763 |
T |
|
| Q |
414 |
aagaaaacatgcactttcttaagtctcttcaggtt--tatatctactgtgttatgttcgattgtcttattatggtatta |
490 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
32991764 |
aagaaaacatgcactttcttaagtctcttcaggttcatatatctactgtgttatgttctattttcttattatggtatta |
32991842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University