View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16430_high_1 (Length: 305)
Name: NF16430_high_1
Description: NF16430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16430_high_1 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 10 - 295
Target Start/End: Original strand, 51942589 - 51942875
Alignment:
| Q |
10 |
attgttttatattttgaatctctgatagtacaacttcatgattctggtaa-ttaccaattctaaattgatcaaagcaattcaatgtttgtgacaaactct |
108 |
Q |
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| T |
51942589 |
attgttttatattctaaatctctgatagtacaactttatgattctggtaaattaccaattctaaattgatcaaagcaattcaatgtttgtgacaaactct |
51942688 |
T |
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| Q |
109 |
gttattcaaaatttta--gagttaaaagagaaataaactttcttgatcctttagcattaggcgactaaaattattttagagctgcgagtatcaacttcta |
206 |
Q |
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| T |
51942689 |
gttattcaaaattttatagagttaaaagagaaataaactttcttgatcctttagcattaggcgactaaaattattttagagctgcg--tatcaacttcta |
51942786 |
T |
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| Q |
207 |
tgaaaacaattgacgtaggatacttccctctccttattgaaatcatctgatctatttgcataattgatttttaattttgatattgtttt |
295 |
Q |
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| T |
51942787 |
tgaaaacaattgacgaaggatacttccctctccttattgaaatcatctgatctatttgcataattgatttttaaatttgatatggtttt |
51942875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 257 - 305
Target Start/End: Original strand, 5159982 - 5160030
Alignment:
| Q |
257 |
tctatttgcataattgatttttaattttgatattgttttgaaggctatt |
305 |
Q |
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| T |
5159982 |
tctatttgcataattgatttttaaatttgatattgttttgaaggctatt |
5160030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 301
Target Start/End: Original strand, 46490416 - 46490461
Alignment:
| Q |
256 |
atctatttgcataattgatttttaattttgatattgttttgaaggc |
301 |
Q |
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| T |
46490416 |
atctatttgaataattgattttgaattttgatatggttttaaaggc |
46490461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 302
Target Start/End: Complemental strand, 47397743 - 47397695
Alignment:
| Q |
254 |
tgatctatttgcataattgatttttaattttgatattgttttgaaggct |
302 |
Q |
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| T |
47397743 |
tgatctatttgcataactgatttttaaatttgatatgggtttaaaggct |
47397695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 35161936 - 35161988
Alignment:
| Q |
168 |
cgactaaaattattttagagctgcgagtatcaacttctatgaaaacaattgac |
220 |
Q |
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| T |
35161936 |
cgacaaaaatgattttagagtagcaagtatcaacttctatgaaaacaattgac |
35161988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 305
Target Start/End: Complemental strand, 9693136 - 9693088
Alignment:
| Q |
256 |
atctatttgcataattgatttttaattttgatattgttttgaaggctatt |
305 |
Q |
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| T |
9693136 |
atctatttgcataactgatttttaaatttgata-tgttttaaaggctatt |
9693088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 305
Target Start/End: Complemental strand, 9676118 - 9676066
Alignment:
| Q |
253 |
ctgatctatttgcataattgatttttaattttgatattgttttgaaggctatt |
305 |
Q |
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| T |
9676118 |
ctgatctatttgaataactgatttttaaatttgatattttatttaaggctatt |
9676066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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