View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16430_high_1_N (Length: 448)
Name: NF16430_high_1_N
Description: NF16430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16430_high_1_N |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 29 - 422
Target Start/End: Original strand, 41366530 - 41366924
Alignment:
| Q |
29 |
atcacaaaagtagtcacaagaaagctgggaagaatgatgatctagtagatgttcttctcaagattcaacgtgtaaatcactcacaacatcccttgaccga |
128 |
Q |
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| T |
41366530 |
atcacaaaagtagtcacaagaaagctaggaagaatgatgatctagtagatgttcttctcaagattcaacgtgtaaatcactcacaacatcccttgaccga |
41366629 |
T |
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| Q |
129 |
cgacaatataaaatcggtcatccaggttagtcaacaaatcgaatatgttaacacatttattttcacaatttaaaggatagttcataatttttcatttgct |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
41366630 |
cgacaatataaaatcggtcatccaggttagtcaacaaatcgaatatgttaacacatttattttcacaatttaaaggatagttcataatttttcatttgtt |
41366729 |
T |
|
| Q |
229 |
taaaagtaaaatttccagtatagtaatttggagggaacatcaaattaataa-cannnnnnnnngttgagcttgtatagaagaaattcattttggtttgat |
327 |
Q |
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| T |
41366730 |
taaaagtaaaatttccagtatagtaatttggagggaacatcaaattaataattttttttttttgttgagtttgtatagaagaaattcattttggtttgat |
41366829 |
T |
|
| Q |
328 |
attagacaaggctaccgttaatccatttgcaggacatgtttgttggtggcactcaatcatcttcggaagctatgttatggacgatgtctgagatg |
422 |
Q |
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| T |
41366830 |
attagacaaggctaccgttaatccatttgcaggacatgtttgttggtggcactcaatcatcttctgaagctgtgttatggacgatgtctgagatg |
41366924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 68 - 165
Target Start/End: Original strand, 41324478 - 41324578
Alignment:
| Q |
68 |
atctagtagatgttcttctcaagattcaacgtgtaa---atcactcacaacatcccttgaccgacgacaatataaaatcggtcatccaggttagtcaaca |
164 |
Q |
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| T |
41324478 |
atctagtagatgttcttctcaagattcaacaggaaaattatcactcacaacatcctttaaccgatgacaatataaagtcaatcatccaggttagtcaaca |
41324577 |
T |
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| Q |
165 |
a |
165 |
Q |
| |
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| |
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| T |
41324578 |
a |
41324578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 62 - 165
Target Start/End: Original strand, 41316403 - 41316509
Alignment:
| Q |
62 |
atgatgatctagtagatgttcttctcaagattcaacgtgtaa---atcactcacaacatcccttgaccgacgacaatataaaatcggtcatccaggttag |
158 |
Q |
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|||| ||||||||||||||||||||||||||||||| | || |||||||||||||||| || || || |||||||||||||| ||||||||||||| |
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| T |
41316403 |
atgaagatctagtagatgttcttctcaagattcaacaggaaaattatcactcacaacatcctttaactgatgacaatataaaatcaatcatccaggttag |
41316502 |
T |
|
| Q |
159 |
tcaacaa |
165 |
Q |
| |
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|| |||| |
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| T |
41316503 |
tccacaa |
41316509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 29 - 160
Target Start/End: Original strand, 41328337 - 41328471
Alignment:
| Q |
29 |
atcacaaaagtagtcacaagaaagctgggaagaatgatgatctagtagatgttcttctcaagattcaacgtgtaa---atcactcacaacatcccttgac |
125 |
Q |
| |
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|||||| ||||| ||||||| |||| | || |||| ||||||||||||||||||||||||||||||| | || |||||||| ||||||| || || |
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| T |
41328337 |
atcacagaagtattcacaaggaagcaagcaatgatgaagatctagtagatgttcttctcaagattcaacaggaaaattatcactcagaacatcctttaac |
41328436 |
T |
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| Q |
126 |
cgacgacaatataaaatcggtcatccaggttagtc |
160 |
Q |
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| T |
41328437 |
cgatgacaatatgaaatcaatcatccaggttagtc |
41328471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 62 - 160
Target Start/End: Original strand, 41332383 - 41332484
Alignment:
| Q |
62 |
atgatgatctagtagatgttcttctcaagattcaacgtgtaa---atcactcacaacatcccttgaccgacgacaatataaaatcggtcatccaggttag |
158 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||| | || || ||||| ||||||| || ||||| |||||||| ||||| ||||||||||||| |
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| T |
41332383 |
atgaagatctagtagatgttcttctcaagattcaacaggaaaattattactcagaacatcctttaaccgatgacaatatgaaatcaatcatccaggttag |
41332482 |
T |
|
| Q |
159 |
tc |
160 |
Q |
| |
|
|| |
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|
| T |
41332483 |
tc |
41332484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 70 - 159
Target Start/End: Original strand, 41337320 - 41337412
Alignment:
| Q |
70 |
ctagtagatgttcttctcaagattcaacgtgtaaat---cactcacaacatcccttgaccgacgacaatataaaatcggtcatccaggttagt |
159 |
Q |
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||||| ||||||||||||||| |||||| || |||| ||||||||||| |||||||| || || ||||||||||| ||||| ||||||||| |
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| T |
41337320 |
ctagttgatgttcttctcaaggttcaacatgaaaatgttcactcacaacaacccttgactgatgaaaatataaaatcagtcattcaggttagt |
41337412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 165
Target Start/End: Original strand, 41310663 - 41310769
Alignment:
| Q |
62 |
atgatgatctagtagatgttcttctcaagattcaacgtgtaa---atcactcacaacatcccttgaccgacgacaatataaaatcggtcatccaggttag |
158 |
Q |
| |
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|||| ||||||||||||||||||||||||||| ||| | || |||||||| ||||||| || || || |||||||| ||||| |||||||||| || |
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| T |
41310663 |
atgaagatctagtagatgttcttctcaagattaaacaggaaaattatcactcagaacatcctttaacggatgacaatatgaaatcaatcatccaggtaag |
41310762 |
T |
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| Q |
159 |
tcaacaa |
165 |
Q |
| |
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|| |||| |
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| T |
41310763 |
tctacaa |
41310769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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