View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16430_high_2 (Length: 408)
Name: NF16430_high_2
Description: NF16430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16430_high_2 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 13 - 408
Target Start/End: Original strand, 7969550 - 7969947
Alignment:
| Q |
13 |
aatatgaaagaccaaaagacacannnnnnncatcaaacatcgttgtcatcattatcatcaccaatgcatatcatttagaaaccatcgcatctctattctc |
112 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7969550 |
aatatgaaagaccaaaagacacatttttttcatcaaacatcgttgtcatcattatcatcaccaatgcatatcatttagaaaccatcgcatctctattctc |
7969649 |
T |
|
| Q |
113 |
aa--ccctcttttttattatttggcattgtcacaaacttttgtttctcagaagtttcattagctcattttgattgcaatcaatctcaaaaccattctctc |
210 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7969650 |
aaaaccctcttttttattatttggcattgtcacaaacttttgtttctcagaagtttcattagctcattttgattgcaatcaatctcaaaaccattctctc |
7969749 |
T |
|
| Q |
211 |
taatggagaagactcaactggataacctatttcctctaactccaagtgccgtattctctacaaagaagggacgtagcggatatgaaccatcagacacaga |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7969750 |
taatggagaagactcaactggataacctatttcctctaactccaagtgccgtattctctacaaagaagggacgtagcggatatgaaccatcagacacaga |
7969849 |
T |
|
| Q |
311 |
gacggagtggcaagacactccacgtcatgaacgaggaagaaagaacaacatgactttgagtccagaagaaacaaaagctttgtatctaaggaacaaaa |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7969850 |
gacggagtggcaagacactccacgtcatgaacgaggaagaaagaacaacatgactttgagtccagaagaaacaaaagctttgtatctaaggaacaaaa |
7969947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University