View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16430_high_3 (Length: 358)

Name: NF16430_high_3
Description: NF16430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16430_high_3
NF16430_high_3
[»] chr2 (6 HSPs)
chr2 (1-358)||(31913960-31914317)
chr2 (79-128)||(21505244-21505293)
chr2 (78-128)||(32619603-32619653)
chr2 (79-127)||(35707764-35707813)
chr2 (83-111)||(21843111-21843139)
chr2 (83-111)||(21844738-21844766)
[»] chr7 (7 HSPs)
chr7 (71-128)||(7142059-7142116)
chr7 (79-128)||(29544480-29544529)
chr7 (79-128)||(22067911-22067961)
chr7 (91-128)||(2353357-2353394)
chr7 (95-128)||(18496526-18496559)
chr7 (80-128)||(20446199-20446248)
chr7 (86-126)||(21471759-21471800)
[»] chr4 (8 HSPs)
chr4 (8-56)||(17867039-17867087)
chr4 (78-124)||(18897956-18898002)
chr4 (78-126)||(15192166-15192214)
chr4 (86-128)||(25050177-25050219)
chr4 (79-128)||(5906825-5906874)
chr4 (86-126)||(34864403-34864443)
chr4 (84-128)||(10320329-10320373)
chr4 (90-126)||(12111446-12111482)
[»] scaffold0035 (1 HSPs)
scaffold0035 (1-56)||(28357-28412)
[»] chr3 (11 HSPs)
chr3 (79-126)||(21017840-21017887)
chr3 (79-127)||(33914667-33914715)
chr3 (13-54)||(11828458-11828499)
chr3 (78-127)||(13911227-13911276)
chr3 (79-124)||(19219316-19219361)
chr3 (79-126)||(12573252-12573300)
chr3 (79-126)||(13549716-13549764)
chr3 (79-127)||(16970202-16970250)
chr3 (79-126)||(25919569-25919616)
chr3 (79-128)||(1475385-1475435)
chr3 (86-115)||(25188732-25188761)
[»] chr1 (13 HSPs)
chr1 (78-128)||(12424018-12424069)
chr1 (79-128)||(30781720-30781770)
chr1 (78-127)||(26657438-26657487)
chr1 (78-128)||(21451919-21451970)
chr1 (78-127)||(12810284-12810333)
chr1 (90-128)||(18301121-18301159)
chr1 (92-126)||(25266462-25266496)
chr1 (79-121)||(25730676-25730718)
chr1 (86-128)||(50047142-50047184)
chr1 (79-112)||(8247762-8247795)
chr1 (87-128)||(25373747-25373788)
chr1 (79-127)||(11770099-11770147)
chr1 (78-122)||(23519859-23519903)
[»] scaffold0305 (1 HSPs)
scaffold0305 (2-56)||(2683-2737)
[»] chr8 (12 HSPs)
chr8 (78-128)||(6358659-6358709)
chr8 (78-128)||(11310308-11310358)
chr8 (79-128)||(24120192-24120241)
chr8 (79-127)||(12956451-12956499)
chr8 (79-126)||(13082042-13082090)
chr8 (78-126)||(22894638-22894686)
chr8 (89-128)||(30543724-30543763)
chr8 (78-128)||(28901444-28901494)
chr8 (79-127)||(14977212-14977260)
chr8 (86-128)||(16054254-16054297)
chr8 (86-124)||(41505649-41505687)
chr8 (87-128)||(16052390-16052431)
[»] chr5 (15 HSPs)
chr5 (78-128)||(24841714-24841764)
chr5 (79-128)||(12340119-12340167)
chr5 (79-128)||(25594797-25594846)
chr5 (78-122)||(22229776-22229820)
chr5 (79-128)||(17027488-17027537)
chr5 (79-128)||(17382140-17382189)
chr5 (87-128)||(25075350-25075391)
chr5 (87-128)||(25133319-25133360)
chr5 (80-128)||(30072139-30072187)
chr5 (80-126)||(22754911-22754957)
chr5 (86-128)||(22967954-22967996)
chr5 (80-126)||(24517317-24517363)
chr5 (79-128)||(18222454-18222503)
chr5 (88-128)||(16622781-16622820)
chr5 (95-127)||(25367582-25367614)
[»] scaffold0188 (1 HSPs)
scaffold0188 (86-128)||(27066-27108)
[»] scaffold0171 (2 HSPs)
scaffold0171 (86-126)||(21360-21400)
scaffold0171 (79-128)||(6157-6206)
[»] scaffold0002 (1 HSPs)
scaffold0002 (79-128)||(446965-447015)
[»] chr6 (4 HSPs)
chr6 (87-128)||(14924530-14924571)
chr6 (80-113)||(15574901-15574934)
chr6 (86-126)||(1755664-1755704)
chr6 (88-128)||(15576276-15576316)


Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 31913960 - 31914317
Alignment:
Q  1 tttaactatgaattcatcaacaattacaatcacaacatcattttacaccaatttgaactaggtaaaatgatcatttctctctcaacttatttgtcttcaa 100  Q
    |||||| ||||||||||||| |||||||| |||||||||||||||||||||||| |||| |||||||||||| |||||||||| ||||||||||||||||    
T  31913960 tttaaccatgaattcatcaataattacaaccacaacatcattttacaccaatttaaactgggtaaaatgatcctttctctctcgacttatttgtcttcaa 31914059  T
Q  101 atgcaaagaaaaatactaaaaacatagcnnnnnnntgtcatgttatgttttgtcatcaacaatcatataatggttatccctaaaattgtgaactatttta 200  Q
    ||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  31914060 atgcaaagaaaaatactaaaaacatagcaaaaaa-tgtcatgttatgttttgtcatcaacaatcatataatggttatccctaaaagtgtgaactatttta 31914158  T
Q  201 ggtgtcataaaaatatcaacttgatggtaaggaacctcgttagaaggtttgatcgagagggattacctactagaaaagttgcaacaa-tttttaatagtg 299  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||    
T  31914159 ggtgtcataaaaatatcaacttgattgtaaggaacctcgttggaaggtttgatcgagagggattacctactaaaaaagttgcaacaattttttagtagtg 31914258  T
Q  300 aaagctcgtcattctgtaattgagattgttgaaatcatttgagagatcttctctctaga 358  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  31914259 aaagctcgtcattatgtaattgagattgttgaaatcatttgagatatcttctctctaga 31914317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 21505244 - 21505293
Alignment:
Q  79 ctctcaacttatttgtcttcaaatgcaaagaaaaatactaaaaacatagc 128  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  21505244 ctctcatcttatttgtcttcaaatgcaaagaaaaatactaaaaacatagc 21505293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 32619653 - 32619603
Alignment:
Q  78 tctctcaacttatttgtcttcaaatgcaaagaaaaatactaaaaacatagc 128  Q
    |||||||| |||||||||||||||||||||||||| ||||||||| |||||    
T  32619653 tctctcaagttatttgtcttcaaatgcaaagaaaagtactaaaaatatagc 32619603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 127
Target Start/End: Complemental strand, 35707813 - 35707764
Alignment:
Q  79 ctctcaacttatttgtcttcaaatgcaaagaaaaa-tactaaaaacatag 127  Q
    |||||| ||||||||||||||||| |||||||||| ||||||||||||||    
T  35707813 ctctcatcttatttgtcttcaaatacaaagaaaaagtactaaaaacatag 35707764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 111
Target Start/End: Original strand, 21843111 - 21843139
Alignment:
Q  83 caacttatttgtcttcaaatgcaaagaaa 111  Q
    |||||||||||||||||||||||||||||    
T  21843111 caacttatttgtcttcaaatgcaaagaaa 21843139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 111
Target Start/End: Original strand, 21844738 - 21844766
Alignment:
Q  83 caacttatttgtcttcaaatgcaaagaaa 111  Q
    |||||||||||||||||||||||||||||    
T  21844738 caacttatttgtcttcaaatgcaaagaaa 21844766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 71 - 128
Target Start/End: Complemental strand, 7142116 - 7142059
Alignment:
Q  71 tcatttctctctcaacttatttgtcttcaaatgcaaagaaaaatactaaaaacatagc 128  Q
    |||| |||||||||||||||||||||| |||||||||||||| || ||||||||||||    
T  7142116 tcatatctctctcaacttatttgtctttaaatgcaaagaaaactattaaaaacatagc 7142059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 29544529 - 29544480
Alignment:
Q  79 ctctcaacttatttgtcttcaaatgcaaagaaaaatactaaaaacatagc 128  Q
    |||||| ||||||||||||||||||||||||||| || ||||||||||||    
T  29544529 ctctcatcttatttgtcttcaaatgcaaagaaaattaataaaaacatagc 29544480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 22067911 - 22067961
Alignment:
Q  79 ctctcaacttatttgtcttcaaatgcaaagaaaaa-tactaaaaacatagc 128  Q
    |||||| |||||||||||||||||||||| ||||| |||||||||||||||    
T  22067911 ctctcatcttatttgtcttcaaatgcaaataaaaattactaaaaacatagc 22067961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 128
Target Start/End: Original strand, 2353357 - 2353394
Alignment:
Q  91 ttgtcttcaaatgcaaagaaaaatactaaaaacatagc 128  Q
    ||||||||||||||||||||||  ||||||||||||||    
T  2353357 ttgtcttcaaatgcaaagaaaacaactaaaaacatagc 2353394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 128
Target Start/End: Complemental strand, 18496559 - 18496526
Alignment:
Q  95 cttcaaatgcaaagaaaaatactaaaaacatagc 128  Q
    |||||||||||||||||| |||||||||||||||    
T  18496559 cttcaaatgcaaagaaaactactaaaaacatagc 18496526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 20446248 - 20446199
Alignment:
Q  80 tctcaacttatttgtcttcaaatgcaaagaaaaa-tactaaaaacatagc 128  Q
    ||||| |||| ||||||||||||||||||||||| || ||||||||||||    
T  20446248 tctcatcttaattgtcttcaaatgcaaagaaaaagtattaaaaacatagc 20446199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 21471800 - 21471759
Alignment:
Q  86 cttatttgtcttcaaatgcaaagaaaaa-tactaaaaacata 126  Q
    ||||||||||||||||||||| |||||| |||||||||||||    
T  21471800 cttatttgtcttcaaatgcaaggaaaaagtactaaaaacata 21471759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 17867039 - 17867087
Alignment:
Q  8 atgaattcatcaacaattacaatcacaacatcattttacaccaatttga 56  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||||    
T  17867039 atgaattcatcaacaattataaccacaacatcattttacaccaatttga 17867087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 78 - 124
Target Start/End: Complemental strand, 18898002 - 18897956
Alignment:
Q  78 tctctcaacttatttgtcttcaaatgcaaagaaaaatactaaaaaca 124  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||    
T  18898002 tctctcaacttatttgtcttcaaatgcaaagaaaagtagtaaaaaca 18897956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 15192214 - 15192166
Alignment:
Q  78 tctctcaacttatttgtcttcaaatgcaaagaaaaatactaaaaacata 126  Q
    ||||||| ||||||||||||||||||||||||||| ||| |||||||||    
T  15192214 tctctcatcttatttgtcttcaaatgcaaagaaaagtacgaaaaacata 15192166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 128
Target Start/End: Original strand, 25050177 - 25050219
Alignment:
Q  86 cttatttgtcttcaaatgcaaagaaaaatactaaaaacatagc 128  Q
    ||||||||||||||||| |||| ||||||||||||||||||||    
T  25050177 cttatttgtcttcaaatacaaataaaaatactaaaaacatagc 25050219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 5906825 - 5906874
Alignment:
Q  79 ctctcaacttatttgtcttcaaatgcaaagaaaaatactaaaaacatagc 128  Q
    |||||| ||| |||||||||||||||||| |||| |||||||||||||||    
T  5906825 ctctcatcttgtttgtcttcaaatgcaaataaaagtactaaaaacatagc 5906874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 34864403 - 34864443
Alignment:
Q  86 cttatttgtcttcaaatgcaaagaaaaatactaaaaacata 126  Q
    ||||||||||||||||| ||||||||| |||||||||||||    
T  34864403 cttatttgtcttcaaatacaaagaaaagtactaaaaacata 34864443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 128
Target Start/End: Original strand, 10320329 - 10320373
Alignment:
Q  84 aacttatttgtcttcaaatgcaaagaaaaatactaaaaacatagc 128  Q
    ||||| ||| |||||||||| |||||||| |||||||||||||||    
T  10320329 aacttttttatcttcaaatggaaagaaaattactaaaaacatagc 10320373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 126
Target Start/End: Original strand, 12111446 - 12111482
Alignment:
Q  90 tttgtcttcaaatgcaaagaaaaatactaaaaacata 126  Q
    |||||||||||||||||| |||| |||||||||||||    
T  12111446 tttgtcttcaaatgcaaataaaagtactaaaaacata 12111482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 28412 - 28357
Alignment:
Q  1 tttaactatgaattcatcaacaattacaatcacaacatcattttacaccaatttga 56  Q
    |||||| |||||||||||||||||||||| ||||||||||||| ||| ||||||||    
T  28412 tttaaccatgaattcatcaacaattacaaccacaacatcatttcacatcaatttga 28357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 126
Target Start/End: Complemental strand, 21017887 - 21017840
Alignment:
Q  79 ctctcaacttatttgtcttcaaatgcaaagaaaaatactaaaaacata 126  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||    
T  21017887 ctctcatcttatttttcttcaaatgcaaagaaaaatactaaaaacata 21017840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 79 - 127
Target Start/End: Original strand, 33914667 - 33914715
Alignment:
Q  79 ctctcaacttatttgtcttcaaatgcaaagaaaaatactaaaaacatag 127  Q
    |||||| |||||||||||| |||||||||||||| ||||||||||||||    
T  33914667 ctctcatcttatttgtcttgaaatgcaaagaaaagtactaaaaacatag 33914715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 11828458 - 11828499
Alignment:
Q  13 ttcatcaacaattacaatcacaacatcattttacaccaattt 54  Q
    ||||||||||||||||| ||||||||||||||| ||||||||    
T  11828458 ttcatcaacaattacaaccacaacatcattttaaaccaattt 11828499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 13911276 - 13911227
Alignment:
Q  78 tctctcaacttatttgtcttcaaatgcaaagaaaaatactaaaaacatag 127  Q
    |||||| ||||| |||||||||||| ||||||||| ||||||||||||||    
T  13911276 tctctctacttacttgtcttcaaatacaaagaaaattactaaaaacatag 13911227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 124
Target Start/End: Original strand, 19219316 - 19219361
Alignment:
Q  79 ctctcaacttatttgtcttcaaatgcaaagaaaaatactaaaaaca 124  Q
    |||||| ||||||| |||||||| ||||||||||||||||||||||    
T  19219316 ctctcatcttatttatcttcaaaagcaaagaaaaatactaaaaaca 19219361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 126
Target Start/End: Complemental strand, 12573300 - 12573252
Alignment:
Q  79 ctctcaacttatttgtcttcaaatgcaaagaaaaa-tactaaaaacata 126  Q
    |||||| ||||||||||||| |||||||||||||| |||||||||||||    
T  12573300 ctctcatcttatttgtcttctaatgcaaagaaaaagtactaaaaacata 12573252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 126
Target Start/End: Complemental strand, 13549764 - 13549716
Alignment:
Q  79 ctctcaacttatttgtcttcaaatgcaaagaaaaa-tactaaaaacata 126  Q
    |||||| ||||||||||||| |||||||||||||| |||||||||||||    
T  13549764 ctctcatcttatttgtcttctaatgcaaagaaaaagtactaaaaacata 13549716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 127
Target Start/End: Complemental strand, 16970250 - 16970202
Alignment:
Q  79 ctctcaacttatttgtcttcaaatgcaaagaaaaatactaaaaacatag 127  Q
    |||||||||||||||| ||||||| |||||||||  |||||||||||||    
T  16970250 ctctcaacttatttgtgttcaaatacaaagaaaagcactaaaaacatag 16970202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 79 - 126
Target Start/End: Original strand, 25919569 - 25919616
Alignment:
Q  79 ctctcaacttatttgtcttcaaatgcaaagaaaaatactaaaaacata 126  Q
    |||||| ||||||||||||||||| ||||||||  |||||||||||||    
T  25919569 ctctcatcttatttgtcttcaaattcaaagaaatgtactaaaaacata 25919616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 1475385 - 1475435
Alignment:
Q  79 ctctcaacttatttgtcttcaaatgcaaagaaaaa-tactaaaaacatagc 128  Q
    |||||| |||||| | ||||||||||||||||||| |||||||||||||||    
T  1475385 ctctcatcttattagacttcaaatgcaaagaaaaagtactaaaaacatagc 1475435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 115
Target Start/End: Complemental strand, 25188761 - 25188732
Alignment:
Q  86 cttatttgtcttcaaatgcaaagaaaaata 115  Q
    ||||||||||||||||||||||||||||||    
T  25188761 cttatttgtcttcaaatgcaaagaaaaata 25188732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 12424018 - 12424069
Alignment:
Q  78 tctctcaacttatttgtcttcaaatgcaaagaaaaa-tactaaaaacatagc 128  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  12424018 tctctcatcttatttgtcttcaaatgcaaagaaaaagtactaaaaacatagc 12424069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 30781770 - 30781720
Alignment:
Q  79 ctctcaacttatttgtcttcaaatgcaaagaaaaa-tactaaaaacatagc 128  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  30781770 ctctcatcttatttgtcttcaaatgcaaagaaaaattactaaaaacatagc 30781720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 26657487 - 26657438
Alignment:
Q  78 tctctcaacttatttgtcttcaaatgcaaagaaaaatactaaaaacatag 127  Q
    ||||||||| ||||||||||||||||||||||||| || |||||||||||    
T  26657487 tctctcaacatatttgtcttcaaatgcaaagaaaagtaataaaaacatag 26657438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 21451919 - 21451970
Alignment:
Q  78 tctctcaacttatttgtcttcaaatgcaaagaaaa-atactaaaaacatagc 128  Q
    ||||||| |||||||||||||||||||||||||||  |||||||||||||||    
T  21451919 tctctcatcttatttgtcttcaaatgcaaagaaaacgtactaaaaacatagc 21451970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 12810333 - 12810284
Alignment:
Q  78 tctctcaacttatttgtcttcaaatgcaaagaaaaatactaaaaacatag 127  Q
    |||||||||||||||||||| ||||  |||||||| ||||||||||||||    
T  12810333 tctctcaacttatttgtctttaaatataaagaaaagtactaaaaacatag 12810284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 128
Target Start/End: Original strand, 18301121 - 18301159
Alignment:
Q  90 tttgtcttcaaatgcaaagaaaaatactaaaaacatagc 128  Q
    ||||||||||||||||||||||| ||| |||||||||||    
T  18301121 tttgtcttcaaatgcaaagaaaagtaccaaaaacatagc 18301159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 126
Target Start/End: Original strand, 25266462 - 25266496
Alignment:
Q  92 tgtcttcaaatgcaaagaaaaatactaaaaacata 126  Q
    ||||||||||||||||||||| |||||||||||||    
T  25266462 tgtcttcaaatgcaaagaaaagtactaaaaacata 25266496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 121
Target Start/End: Original strand, 25730676 - 25730718
Alignment:
Q  79 ctctcaacttatttgtcttcaaatgcaaagaaaaatactaaaa 121  Q
    |||||| ||||||||| ||||||||||||||||| ||||||||    
T  25730676 ctctcatcttatttgttttcaaatgcaaagaaaagtactaaaa 25730718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 128
Target Start/End: Complemental strand, 50047184 - 50047142
Alignment:
Q  86 cttatttgtcttcaaatgcaaagaaaaatactaaaaacatagc 128  Q
    ||||||||||||||||||||||||||| ||  |||||||||||    
T  50047184 cttatttgtcttcaaatgcaaagaaaagtatcaaaaacatagc 50047142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 112
Target Start/End: Original strand, 8247762 - 8247795
Alignment:
Q  79 ctctcaacttatttgtcttcaaatgcaaagaaaa 112  Q
    |||||| |||||||||||||||||||||||||||    
T  8247762 ctctcatcttatttgtcttcaaatgcaaagaaaa 8247795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 128
Target Start/End: Complemental strand, 25373788 - 25373747
Alignment:
Q  87 ttatttgtcttcaaatgcaaagaaaaatactaaaaacatagc 128  Q
    ||||||| |||||||||||||||||| ||||||||| |||||    
T  25373788 ttatttgccttcaaatgcaaagaaaactactaaaaatatagc 25373747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 127
Target Start/End: Original strand, 11770099 - 11770147
Alignment:
Q  79 ctctcaacttatttgtcttcaaatgcaaagaaaaatactaaaaacatag 127  Q
    |||||| ||||||| ||||||||||||||||| | || |||||||||||    
T  11770099 ctctcatcttatttatcttcaaatgcaaagaatagtattaaaaacatag 11770147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 122
Target Start/End: Original strand, 23519859 - 23519903
Alignment:
Q  78 tctctcaacttatttgtcttcaaatgcaaagaaaaatactaaaaa 122  Q
    ||||||| | |||||||||||||| |||||||||| |||||||||    
T  23519859 tctctcatcatatttgtcttcaaaagcaaagaaaagtactaaaaa 23519903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0305 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0305
Description:

Target: scaffold0305; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 2683 - 2737
Alignment:
Q  2 ttaactatgaattcatcaacaattacaatcacaacatcattttacaccaatttga 56  Q
    ||||| ||||||||||||| |||||||| ||||||||||||| ||||||||||||    
T  2683 ttaaccatgaattcatcaataattacaaccacaacatcatttcacaccaatttga 2737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 6358709 - 6358659
Alignment:
Q  78 tctctcaacttatttgtcttcaaatgcaaagaaaaatactaaaaacatagc 128  Q
    ||||||||||||| |||||||||||||||| |||| |||||||||||||||    
T  6358709 tctctcaacttatatgtcttcaaatgcaaataaaagtactaaaaacatagc 6358659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 11310308 - 11310358
Alignment:
Q  78 tctctcaacttatttgtcttcaaatgcaaagaaaaatactaaaaacatagc 128  Q
    ||||||||||||||| |||||||||||||||| || |||||||||||||||    
T  11310308 tctctcaacttatttttcttcaaatgcaaagataagtactaaaaacatagc 11310358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 24120241 - 24120192
Alignment:
Q  79 ctctcaacttatttgtcttcaaatgcaaagaaaaatactaaaaacatagc 128  Q
    |||||| ||||||| ||||||||||||||||||| |||||||||||||||    
T  24120241 ctctcatcttatttctcttcaaatgcaaagaaaagtactaaaaacatagc 24120192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 79 - 127
Target Start/End: Complemental strand, 12956499 - 12956451
Alignment:
Q  79 ctctcaacttatttgtcttcaaatgcaaagaaaaatactaaaaacatag 127  Q
    |||||| ||||||| ||||||||||||||||||| ||||||||||||||    
T  12956499 ctctcatcttatttatcttcaaatgcaaagaaaagtactaaaaacatag 12956451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 79 - 126
Target Start/End: Original strand, 13082042 - 13082090
Alignment:
Q  79 ctctcaacttatttgtcttcaaatgcaaagaaaaa-tactaaaaacata 126  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||    
T  13082042 ctctcatcttatttgtcttcaaatgcaaagaaaaagtactaaaaacata 13082090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 22894638 - 22894686
Alignment:
Q  78 tctctcaacttatttgtcttcaaatgcaaagaaaaatactaaaaacata 126  Q
    |||||||||||||||| |||||||||| ||||||| |||||||||||||    
T  22894638 tctctcaacttatttggcttcaaatgcgaagaaaagtactaaaaacata 22894686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 128
Target Start/End: Complemental strand, 30543763 - 30543724
Alignment:
Q  89 atttgtcttcaaatgcaaagaaaaatactaaaaacatagc 128  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  30543763 atttgtcttcaaatgcaaaaaaaaatactaaaaacatagc 30543724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 28901444 - 28901494
Alignment:
Q  78 tctctcaacttatttgtcttcaaatgcaaagaaaaatactaaaaacatagc 128  Q
    ||||||||||||||||| ||||||||||||||||| || ||||| ||||||    
T  28901444 tctctcaacttatttgtattcaaatgcaaagaaaagtattaaaagcatagc 28901494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 127
Target Start/End: Original strand, 14977212 - 14977260
Alignment:
Q  79 ctctcaacttatttgtcttcaaatgcaaagaaaaatactaaaaacatag 127  Q
    |||||| |||||||||||| |||||||||||||| | ||||||||||||    
T  14977212 ctctcatcttatttgtcttaaaatgcaaagaaaagtgctaaaaacatag 14977260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 86 - 128
Target Start/End: Complemental strand, 16054297 - 16054254
Alignment:
Q  86 cttatttgtcttcaaatgcaaagaaaaa-tactaaaaacatagc 128  Q
    |||||||||||||||||||||||||||| ||||||| |||||||    
T  16054297 cttatttgtcttcaaatgcaaagaaaaagtactaaagacatagc 16054254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 124
Target Start/End: Original strand, 41505649 - 41505687
Alignment:
Q  86 cttatttgtcttcaaatgcaaagaaaaatactaaaaaca 124  Q
    |||||||||||||||||||||||||||  ||||||||||    
T  41505649 cttatttgtcttcaaatgcaaagaaaataactaaaaaca 41505687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 128
Target Start/End: Original strand, 16052390 - 16052431
Alignment:
Q  87 ttatttgtcttcaaatgcaaagaaaaatactaaaaacatagc 128  Q
    ||||||||| ||||||||||| |||| |||||||||||||||    
T  16052390 ttatttgtcctcaaatgcaaataaaagtactaaaaacatagc 16052431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 24841764 - 24841714
Alignment:
Q  78 tctctcaacttatttgtcttcaaatgcaaagaaaaatactaaaaacatagc 128  Q
    ||||| ||||||||||||||||||||||||||| | |||||||||||||||    
T  24841764 tctctaaacttatttgtcttcaaatgcaaagaatagtactaaaaacatagc 24841714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 12340119 - 12340167
Alignment:
Q  79 ctctcaacttatttgtcttcaaatgcaaagaaaaatactaaaaacatagc 128  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  12340119 ctctcaccttatttgtcttcaaatgcaaag-aaaatactaaaaacatagc 12340167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 25594797 - 25594846
Alignment:
Q  79 ctctcaacttatttgtcttcaaatgcaaagaaaaatactaaaaacatagc 128  Q
    |||||| |||||||||||||||||||||| |||| |||||||||||||||    
T  25594797 ctctcatcttatttgtcttcaaatgcaaataaaagtactaaaaacatagc 25594846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 22229820 - 22229776
Alignment:
Q  78 tctctcaacttatttgtcttcaaatgcaaagaaaaatactaaaaa 122  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||    
T  22229820 tctctcatcttatttgtcttcaaatgcaaagaaaagtactaaaaa 22229776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 17027537 - 17027488
Alignment:
Q  79 ctctcaacttatttgtcttcaaatgcaaagaaaaatactaaaaacatagc 128  Q
    |||||| |||| ||||||| |||||||||||||| |||||||||||||||    
T  17027537 ctctcatcttaattgtctttaaatgcaaagaaaagtactaaaaacatagc 17027488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 17382140 - 17382189
Alignment:
Q  79 ctctcaacttatttgtcttcaaatgcaaagaaaaatactaaaaacatagc 128  Q
    |||||| |||||||||||||||||||||| |||| ||||||| |||||||    
T  17382140 ctctcatcttatttgtcttcaaatgcaaaaaaaagtactaaacacatagc 17382189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 128
Target Start/End: Original strand, 25075350 - 25075391
Alignment:
Q  87 ttatttgtcttcaaatgcaaagaaaaatactaaaaacatagc 128  Q
    |||||||||||||| ||||||||||| |||||||||||||||    
T  25075350 ttatttgtcttcaagtgcaaagaaaattactaaaaacatagc 25075391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 128
Target Start/End: Original strand, 25133319 - 25133360
Alignment:
Q  87 ttatttgtcttcaaatgcaaagaaaaatactaaaaacatagc 128  Q
    |||||||||||||| ||||||||||| |||||||||||||||    
T  25133319 ttatttgtcttcaagtgcaaagaaaattactaaaaacatagc 25133360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 30072187 - 30072139
Alignment:
Q  80 tctcaacttatttgtcttcaaatgcaaagaaaaatactaaaaacatagc 128  Q
    ||||| ||||||||||||||||| ||||||||| |||| ||||||||||    
T  30072187 tctcatcttatttgtcttcaaatccaaagaaaagtacttaaaacatagc 30072139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 126
Target Start/End: Complemental strand, 22754957 - 22754911
Alignment:
Q  80 tctcaacttatttgtcttcaaatgcaaagaaaaatactaaaaacata 126  Q
    ||||| |||||||||||| |||||||||||||  |||||||||||||    
T  22754957 tctcatcttatttgtctttaaatgcaaagaaacgtactaaaaacata 22754911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 128
Target Start/End: Original strand, 22967954 - 22967996
Alignment:
Q  86 cttatttgtcttcaaatgcaaagaaaaatactaaaaacatagc 128  Q
    |||||||||||| | |||||||||||| |||||||||||||||    
T  22967954 cttatttgtcttaacatgcaaagaaaactactaaaaacatagc 22967996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 126
Target Start/End: Complemental strand, 24517363 - 24517317
Alignment:
Q  80 tctcaacttatttgtcttcaaatgcaaagaaaaatactaaaaacata 126  Q
    ||||| ||||||||||||||||||||||| |||  ||||||||||||    
T  24517363 tctcatcttatttgtcttcaaatgcaaagcaaagaactaaaaacata 24517317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 18222503 - 18222454
Alignment:
Q  79 ctctcaacttatttgtcttcaaatgcaaagaaaaatactaaaaacatagc 128  Q
    |||||| |||||||||||||||||  ||| |||||||||||||| |||||    
T  18222503 ctctcatcttatttgtcttcaaatagaaataaaaatactaaaaatatagc 18222454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 128
Target Start/End: Original strand, 16622781 - 16622820
Alignment:
Q  88 tatttgtcttcaaatgcaaagaaaaatactaaaaacatagc 128  Q
    |||||||||||||||| ||| ||||||||||||||||||||    
T  16622781 tatttgtcttcaaatgtaaa-aaaaatactaaaaacatagc 16622820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 25367614 - 25367582
Alignment:
Q  95 cttcaaatgcaaagaaaaatactaaaaacatag 127  Q
    ||||||||||||||||| |||||||||||||||    
T  25367614 cttcaaatgcaaagaaatatactaaaaacatag 25367582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 128
Target Start/End: Original strand, 27066 - 27108
Alignment:
Q  86 cttatttgtcttcaaatgcaaagaaaaatactaaaaacatagc 128  Q
    ||||||| ||||||||||||||||||| |||||||||||||||    
T  27066 cttatttatcttcaaatgcaaagaaaagtactaaaaacatagc 27108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 21400 - 21360
Alignment:
Q  86 cttatttgtcttcaaatgcaaagaaaaatactaaaaacata 126  Q
    ||||||| |||||||||||||||||||| ||||||||||||    
T  21400 cttatttttcttcaaatgcaaagaaaaacactaaaaacata 21360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 6206 - 6157
Alignment:
Q  79 ctctcaacttatttgtcttcaaatgcaaagaaaaatactaaaaacatagc 128  Q
    |||||| ||||||||| || ||||| |||||||| |||||||||||||||    
T  6206 ctctcatcttatttgtgtttaaatggaaagaaaagtactaaaaacatagc 6157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 447015 - 446965
Alignment:
Q  79 ctctcaacttatttgtcttcaaatgcaaa-gaaaaatactaaaaacatagc 128  Q
    |||||| |||||||||||||||||| ||| ||||| |||||||||||||||    
T  447015 ctctcatcttatttgtcttcaaatgtaaaggaaaagtactaaaaacatagc 446965  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 128
Target Start/End: Original strand, 14924530 - 14924571
Alignment:
Q  87 ttatttgtcttcaaatgcaaagaaaaatactaaaaacatagc 128  Q
    ||||||| ||||||||||||||||||  ||||||||||||||    
T  14924530 ttatttgccttcaaatgcaaagaaaataactaaaaacatagc 14924571  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 15574934 - 15574901
Alignment:
Q  80 tctcaacttatttgtcttcaaatgcaaagaaaaa 113  Q
    ||||| ||||||||||||||||||||||||||||    
T  15574934 tctcatcttatttgtcttcaaatgcaaagaaaaa 15574901  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 1755664 - 1755704
Alignment:
Q  86 cttatttgtcttcaaatgcaaagaaaaatactaaaaacata 126  Q
    ||||||||||||||||| |||||||||  ||||||||||||    
T  1755664 cttatttgtcttcaaattcaaagaaaataactaaaaacata 1755704  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 128
Target Start/End: Original strand, 15576276 - 15576316
Alignment:
Q  88 tatttgtcttcaaatgcaaagaaaaatactaaaaacatagc 128  Q
    |||||||||| |||| ||||||||| |||||||||||||||    
T  15576276 tatttgtctttaaattcaaagaaaagtactaaaaacatagc 15576316  T

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