View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16430_high_4 (Length: 353)

Name: NF16430_high_4
Description: NF16430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16430_high_4
NF16430_high_4
[»] chr5 (13 HSPs)
chr5 (29-353)||(41366342-41366666)
chr5 (168-353)||(41324390-41324578)
chr5 (33-348)||(41332166-41332484)
chr5 (168-353)||(41316321-41316509)
chr5 (168-348)||(41328288-41328471)
chr5 (168-353)||(41310581-41310769)
chr5 (60-225)||(41369703-41369869)
chr5 (33-285)||(31178408-31178660)
chr5 (91-285)||(31225166-31225360)
chr5 (41-285)||(31188453-31188697)
chr5 (181-347)||(41337243-41337412)
chr5 (87-141)||(41337149-41337203)
chr5 (167-225)||(41431253-41431311)
[»] chr4 (1 HSPs)
chr4 (33-353)||(17249070-17249393)


Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 29 - 353
Target Start/End: Original strand, 41366342 - 41366666
Alignment:
Q  29 tggaaaaaagaataaacaccaagaagtgtttaaatcagcaatgaaggaaatatttaagctattgggaggattttcttttgcagatttgtatccttctatt 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41366342 tggaaaaaagaataaacaccaagaagtgtttaaatcagcaatgaaggaaatatttaagctattgggaggattttcttttgcagatttgtatccttctatt 41366441  T
Q  129 aaaattcttcaaatgttaagttggccaaggaaaaaacttgaaaaacttcatagagagactgatatgatattgcaagagatcatcgatgatcacaaaagta 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41366442 aaaattcttcaaatgttaagttggccaaggaaaaaacttgaaaaacttcatagagagactgatatgatattgcaagagatcatcgatgatcacaaaagta 41366541  T
Q  229 gtcacaagaaagctgggaagaatgatgatctagtagatgttcttctcaagattcaacgtgtaaatcactcacaacatcccttgaccgacgacaatataaa 328  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41366542 gtcacaagaaagctaggaagaatgatgatctagtagatgttcttctcaagattcaacgtgtaaatcactcacaacatcccttgaccgacgacaatataaa 41366641  T
Q  329 atcggtcatccaggttagtcaacaa 353  Q
    |||||||||||||||||||||||||    
T  41366642 atcggtcatccaggttagtcaacaa 41366666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 168 - 353
Target Start/End: Original strand, 41324390 - 41324578
Alignment:
Q  168 gaaaaacttcatagagagactgatatgatattgcaagagatcatcgatgatcacaaaagtagtcacaagaaagctgggaagaatgatgatctagtagatg 267  Q
    ||||||||||| | ||||| |||||||||||||||||| || ||||| ||||||||||| | ||||||| ||| | | ||  | ||  ||||||||||||    
T  41324390 gaaaaacttcacaaagagattgatatgatattgcaagacattatcgacgatcacaaaagcattcacaaggaagatagcaatgaagaatatctagtagatg 41324489  T
Q  268 ttcttctcaagattcaacgtgtaa---atcactcacaacatcccttgaccgacgacaatataaaatcggtcatccaggttagtcaacaa 353  Q
    ||||||||||||||||||  | ||   |||||||||||||||| || ||||| ||||||||||| ||  ||||||||||||||||||||    
T  41324490 ttcttctcaagattcaacaggaaaattatcactcacaacatcctttaaccgatgacaatataaagtcaatcatccaggttagtcaacaa 41324578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 33 - 348
Target Start/End: Original strand, 41332166 - 41332484
Alignment:
Q  33 aaaaagaataaacaccaagaagtgtttaaatcagcaatgaaggaaatatttaagctattgggaggattttcttttgcagatttgtatccttctattaaaa 132  Q
    |||| ||||| | ||||||| ||||| | |||||||||| || || ||||   |||||| |||||||||    |||||||||||||||||||||||||||    
T  41332166 aaaaggaatagaaaccaagatgtgttcatatcagcaatggagaaagtattggtgctattaggaggatttgaaattgcagatttgtatccttctattaaaa 41332265  T
Q  133 ttcttcaaatgttaagttggccaaggaaaaaacttgaaaaacttcatagagagactgatatgatattgcaagagatcatcgatgatcacaaaagtagtca 232  Q
    | ||||||    | ||| ||   | ||  ||| | |||||| |||||||||||  |||||||||| ||||||| |||||||| ||||||| ||| | |||    
T  41332266 tgcttcaatgcatgagtagggagaagaccaaaatggaaaaaattcatagagagcttgatatgataatgcaagacatcatcgacgatcacagaagcattca 41332365  T
Q  233 caagaaagctgggaagaatgatgatctagtagatgttcttctcaagattcaacgtgtaa---atcactcacaacatcccttgaccgacgacaatataaaa 329  Q
    |||| ||||  | ||  |||| |||||||||||||||||||||||||||||||  | ||   || ||||| ||||||| || ||||| |||||||| |||    
T  41332366 caaggaagcaagcaacgatgaagatctagtagatgttcttctcaagattcaacaggaaaattattactcagaacatcctttaaccgatgacaatatgaaa 41332465  T
Q  330 tcggtcatccaggttagtc 348  Q
    ||  |||||||||||||||    
T  41332466 tcaatcatccaggttagtc 41332484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 168 - 353
Target Start/End: Original strand, 41316321 - 41316509
Alignment:
Q  168 gaaaaacttcatagagagactgatatgatattgcaagagatcatcgatgatcacaaaagtagtcacaagaaagctgggaagaatgatgatctagtagatg 267  Q
    ||||||||||| | ||||  |||||||| ||||||||| |||||||| ||||||||||| | ||||||| |||   | ||  |||| |||||||||||||    
T  41316321 gaaaaacttcacaaagagcttgatatgacattgcaagacatcatcgacgatcacaaaagcattcacaaggaagaaagcaatgatgaagatctagtagatg 41316420  T
Q  268 ttcttctcaagattcaacgtgtaa---atcactcacaacatcccttgaccgacgacaatataaaatcggtcatccaggttagtcaacaa 353  Q
    ||||||||||||||||||  | ||   |||||||||||||||| || || || ||||||||||||||  ||||||||||||||| ||||    
T  41316421 ttcttctcaagattcaacaggaaaattatcactcacaacatcctttaactgatgacaatataaaatcaatcatccaggttagtccacaa 41316509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 168 - 348
Target Start/End: Original strand, 41328288 - 41328471
Alignment:
Q  168 gaaaaacttcatagagagactgatatgatattgcaagagatcatcgatgatcacaaaagtagtcacaagaaagctgggaagaatgatgatctagtagatg 267  Q
    ||||||||||||| ||||| ||||||||||   ||||| |||||||| ||||||| ||||| ||||||| ||||  | ||  |||| |||||||||||||    
T  41328288 gaaaaacttcatacagagattgatatgatagcacaagacatcatcgacgatcacagaagtattcacaaggaagcaagcaatgatgaagatctagtagatg 41328387  T
Q  268 ttcttctcaagattcaacgtgtaa---atcactcacaacatcccttgaccgacgacaatataaaatcggtcatccaggttagtc 348  Q
    ||||||||||||||||||  | ||   |||||||| ||||||| || ||||| |||||||| |||||  |||||||||||||||    
T  41328388 ttcttctcaagattcaacaggaaaattatcactcagaacatcctttaaccgatgacaatatgaaatcaatcatccaggttagtc 41328471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 168 - 353
Target Start/End: Original strand, 41310581 - 41310769
Alignment:
Q  168 gaaaaacttcatagagagactgatatgatattgcaagagatcatcgatgatcacaaaagtagtcacaagaaagctgggaagaatgatgatctagtagatg 267  Q
    |||||| |||| | ||||| | |||||||||||||||| |||||||| ||||||||||| | || |||| ||| | | ||  |||| |||||||||||||    
T  41310581 gaaaaagttcacaaagagatttatatgatattgcaagacatcatcgacgatcacaaaagcattcgcaaggaagatagcaatgatgaagatctagtagatg 41310680  T
Q  268 ttcttctcaagattcaacgtgtaa---atcactcacaacatcccttgaccgacgacaatataaaatcggtcatccaggttagtcaacaa 353  Q
    |||||||||||||| |||  | ||   |||||||| ||||||| || || || |||||||| |||||  |||||||||| |||| ||||    
T  41310681 ttcttctcaagattaaacaggaaaattatcactcagaacatcctttaacggatgacaatatgaaatcaatcatccaggtaagtctacaa 41310769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 60 - 225
Target Start/End: Original strand, 41369703 - 41369869
Alignment:
Q  60 aaatcagcaatgaaggaaatatttaagctattgggaggattttcttttgcagatttgtatccttctattaaaattcttcaaatgttaagttggccaagga 159  Q
    |||||||||||| |||||  | | ||| |||||| ||||||||   |||| ||||||||||||||||||||||| ||||||| | ||||| || ||| ||    
T  41369703 aaatcagcaatggaggaatcaataaagttattggaaggattttgcattgctgatttgtatccttctattaaaatacttcaaagggtaagtagggcaaaga 41369802  T
Q  160 aaaaacttgaaaaacttcatagagagac-tgatatgatattgcaagagatcatcgatgatcacaaaa 225  Q
      ||| | ||||||||||| ||| || | |||||| ||||||||||| |||||| ||||||||||||    
T  41369803 ccaaaatggaaaaacttcagagaaaggcatgatattatattgcaagatatcatcaatgatcacaaaa 41369869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 33 - 285
Target Start/End: Complemental strand, 31178660 - 31178408
Alignment:
Q  33 aaaaagaataaacaccaagaagtgtttaaatcagcaatgaaggaaatatttaagctattgggaggattttcttttgcagatttgtatccttctattaaaa 132  Q
    |||| ||||||||||||| |||||||  |||||||||| |||||||||   |   |  |||||||||||| | |||| ||| ||||||||||||||||||    
T  31178660 aaaaggaataaacaccaacaagtgttccaatcagcaataaaggaaatagcgagtttgatgggaggattttgtattgctgatgtgtatccttctattaaaa 31178561  T
Q  133 ttcttcaaatgttaagttggccaaggaaaaaacttgaaaaacttcatagagagactgatatgatattgcaagagatcatcgatgatcacaaaagtagtca 232  Q
    | ||||||  | | ||| ||   | ||  ||| |||||||  |||||| ||||| |||||||||||||||||| ||| |||||||||| ||||  | |||    
T  31178560 tgcttcaacgggtgagtggggtgaagaccaaatttgaaaagtttcataaagagattgatatgatattgcaagatatcgtcgatgatcataaaaacattca 31178461  T
Q  233 caagaaagctgggaagaatgatgatctagtagatgttcttctcaagattcaac 285  Q
    |||| |||   | ||| |||| |||||||| ||||  ||| ||||||||||||    
T  31178460 caaggaagaaagcaaggatgaagatctagttgatgcacttatcaagattcaac 31178408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 91 - 285
Target Start/End: Original strand, 31225166 - 31225360
Alignment:
Q  91 tgggaggattttcttttgcagatttgtatccttctattaaaattcttcaaatgttaagttggccaaggaaaaaacttgaaaaacttcatagagagactga 190  Q
    |||||||||||| | |||  ||| ||||||||||||| ||||| ||||||  | | ||| || | | ||  ||| ||||||| ||||||| ||||| |||    
T  31225166 tgggaggattttgtattgttgatgtgtatccttctataaaaatgcttcaatgggtgagtagggcgaagaccaaagttgaaaagcttcataaagagattga 31225265  T
Q  191 tatgatattgcaagagatcatcgatgatcacaaaagtagtcacaagaaagctgggaagaatgatgatctagtagatgttcttctcaagattcaac 285  Q
    ||||||||||||||| |||||||||||||| ||||  | ||||||| |||   | ||| |||| |||||||| |||  |||||||||||| ||||    
T  31225266 tatgatattgcaagatatcatcgatgatcataaaaacattcacaaggaagaaagcaaggatgaagatctagttgatactcttctcaagatacaac 31225360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 41 - 285
Target Start/End: Complemental strand, 31188697 - 31188453
Alignment:
Q  41 taaacaccaagaagtgtttaaatcagcaatgaaggaaatatttaagctattgggaggattttcttttgcagatttgtatccttctattaaaattcttcaa 140  Q
    ||||||||||||||  || ||||||||||| ||||| |||  ||   |  |||||| ||||| | |||| ||| ||||||||||| |||||||  |||||    
T  31188697 taaacaccaagaagctttcaaatcagcaataaaggagatagctagtttgctgggagaattttgtattgctgatgtgtatccttctgttaaaatgtttcaa 31188598  T
Q  141 atgttaagttggccaaggaaaaaacttgaaaaacttcatagagagactgatatgatattgcaagagatcatcgatgatcacaaaagtagtcacaagaaag 240  Q
      | | ||| || | | ||  ||| ||||||| ||||||| ||||| |||||||||||||||||| ||||||| |||||| ||||  | ||||||| |||    
T  31188597 tgggtgagtagggcgaagacgaaagttgaaaagcttcataaagagattgatatgatattgcaagatatcatcgttgatcataaaaacattcacaaggaag 31188498  T
Q  241 ctgggaagaatgatgatctagtagatgttcttctcaagattcaac 285  Q
       | ||| |||| |||||||| |||  |||||||||||||||||    
T  31188497 aaagcaaggatgaagatctagttgatactcttctcaagattcaac 31188453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 181 - 347
Target Start/End: Original strand, 41337243 - 41337412
Alignment:
Q  181 gagagactgatatgatattgcaagagatcatcgatgatcacaaaagtagtcacaagaaagctgggaagaatgatgatctagtagatgttcttctcaagat 280  Q
    |||||| ||||| |||||||||||| |||||| ||||||| | ||  | |||||  ||| |  | ||| |||| || ||||| ||||||||||||||| |    
T  41337243 gagagattgataggatattgcaagacatcatcaatgatcatagaaacaatcacagtaaaacaagcaaggatgaagacctagttgatgttcttctcaaggt 41337342  T
Q  281 tcaacgtgtaaat---cactcacaacatcccttgaccgacgacaatataaaatcggtcatccaggttagt 347  Q
    ||||| || ||||   ||||||||||| |||||||| || || ||||||||||| ||||| |||||||||    
T  41337343 tcaacatgaaaatgttcactcacaacaacccttgactgatgaaaatataaaatcagtcattcaggttagt 41337412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 141
Target Start/End: Original strand, 41337149 - 41337203
Alignment:
Q  87 ctattgggaggattttcttttgcagatttgtatccttctattaaaattcttcaaa 141  Q
    |||||||||| ||||| | |||| || |||||||||||||||||||| |||||||    
T  41337149 ctattgggagaattttgtattgctgacttgtatccttctattaaaatacttcaaa 41337203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 225
Target Start/End: Original strand, 41431253 - 41431311
Alignment:
Q  167 tgaaaaacttcatagagagactgatatgatattgcaagagatcatcgatgatcacaaaa 225  Q
    ||||||||||  |||||| ||||||| |||||||||||| |||||| ||||||| ||||    
T  41431253 tgaaaaactttgtagagaaactgatacgatattgcaagacatcatcaatgatcataaaa 41431311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 33 - 353
Target Start/End: Complemental strand, 17249393 - 17249070
Alignment:
Q  33 aaaaagaataaacaccaagaagtgtttaaatcagcaatgaaggaaatatttaagctattgggaggattttcttttgcagatttgtatccttctattaaaa 132  Q
    |||| ||| ||||||||| ||||||| |||||||||||  |||||||| | |   | ||||||||||||| | |||  ||||||||||||||||| ||||    
T  17249393 aaaaggaacaaacaccaacaagtgttcaaatcagcaatagaggaaatagtgagtttgttgggaggattttgtattgttgatttgtatccttctatcaaaa 17249294  T
Q  133 ttcttcaaatgttaagttggccaaggaaaaaacttgaaaaacttcatagagagactgatatgatattgcaagagatcatcgatgatcacaaaagtagtca 232  Q
    | ||| ||| | |||||  |   |  |  ||| | |||||||||||||| || | |||||||||||||||||| ||||| |||||||||| || | | ||    
T  17249293 tacttaaaagggtaagtcaggtgaaaaccaaaatggaaaaacttcatagggaaattgatatgatattgcaagatatcatagatgatcacagaaatggaca 17249194  T
Q  233 caagaaagctgggaagaatgatgatctagtagatgttcttctcaagattcaacgtgtaa---atcactcacaacatcccttgaccgacgacaatataaaa 329  Q
     || |||||  | ||| |||| |||||||| |||| |||| ||||||||||||  | ||   || || ||||| || | ||||| || ||||||||||||    
T  17249193 aaacaaagcacgcaaggatgaagatctagttgatgctcttatcaagattcaacaagaaagtgattacccacaaaattcattgactgatgacaatataaaa 17249094  T
Q  330 tcggtcatccaggttagtcaacaa 353  Q
    ||  ||||||||||||||| ||||    
T  17249093 tcaatcatccaggttagtctacaa 17249070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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